Clone GH22790 Report

Search the DGRC for GH22790

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:227
Well:90
Vector:pOT2
Associated Gene/TranscriptSobp-RA
Protein status:GH22790.pep: gold
Preliminary Size:2750
Sequenced Size:2829

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8991 2001-01-01 Release 2 assignment
CG8991 2001-09-19 Blastp of sequenced clone
CG8991 2003-01-01 Sim4 clustering to Release 3
Sobp 2008-04-29 Release 5.5 accounting
Sobp 2008-08-15 Release 5.9 accounting
Sobp 2008-12-18 5.12 accounting

Clone Sequence Records

GH22790.complete Sequence

2829 bp (2829 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058444

> GH22790.complete
AAACGCGAACGCGTGTGGACGTGGATGTGCGCGGTACCGCTTCGAAAAAA
AAATTTGTGAACGCGAATCGGTATATTCGGTTTGGTCGGATTAAACGGTT
GATTCGAAACGAATTCTCGGGCCGTGCATGTGTGAAAGTGAAAACTGAAG
AAAGAGGAATGAAAATGAGCACGGTGCATGAGTTTCCTTGACGTTCGTTG
CTTCGGAAAATCCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAA
AGGCCAATTTTTCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCC
GCCAAGACGTCGCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTC
GAGTGCGATTCCCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAA
AGGAATTCGCGCACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTC
GAGGGTGTGGATGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCT
GCTGCAAAGTGCCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGC
TTCACCAGTTGGAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTG
CTTCGCAGTAGCAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAA
CAACAACAATAATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAG
GAGTCGGCGGCGTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAAC
TGCAGCAGCACCACCACCACGCCATCGGACCACGACACGCGAAGCTCACG
GGAGGAGGATTCCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTG
CGCACACGGATGAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGA
CCGATTGCGGAGAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCG
CTACTGCTCCGAATCCTGCTTCGCCCAGAGCCGGAGGGCATCCTTCAAGA
AGGCCAAGACCTGCGACTGGTGCAAGCATGTGCGCCACGCGGTTAGCTAC
GTGGACTTTCAGGACGGCGCCTCCCAGCTACAGTTCTGCTCGGAGAAGTG
CCTCAACCAGTACAAGATGCAGATCTTCTGCCACGAAACCCAGGCGCACC
TGGACATGCATCCGCACCTGCGGGATCAGGCCATGGATGCGGGCAGCGAG
GCTGGGCTGATAACGCCGGATCTGTGGCTTCGAAACTGCAGGAGTCGCTC
GGCCTCGCCCGCCTCCACGCTCTCGGTGTCTCCGGGTCCGCCGCCTGCTC
CGGCTGTCAGTCGCTGTCCGGACTCACCGCCTAGTCATCATCCCAGCAAA
CCTTTGATCTCAGTGGCACCCGTCTCGAAGTTGCTGGCCCAGAAGAGTCC
GGGTCCCGGACCCGGAGCCCCTCCACCACCGCCACCGCCTGTCCAGCGGC
ATTTGGCGGGAAAGTTGGGTCGCCGCAAGCGCCGAGGTATTTCCTCTTCC
TTGGGCTCGGAAACTGTGGCCAGTCTGCTGCAGAAACAGCAGCAGCAACA
GGCACCGCAGCAACATCAGGCACCTCCCACGCTAACGGCTGACTTTGGTG
GATCCAGCGTACCACTGCCTCCGCTCTCGCCCATGCCCAGCATGCAGGAG
GCACCACAACAGCAGCAGGCTCCTCAGGTGCCACCAACACAAGCCCTGCC
ACGGGGACCAACAGCCATCCCGGCCAGCTACTTCGCGACGCCTTCGAATG
GTGTGCCCATGGGACATCCGTTTGCGGGGCGCCCACCGCCGCCTCCGCAT
CACTTTATGCATCCACCTCCGCATGGCATGATGCCTCGTGGATTTGGTCC
GCACTTCGGGCCACCGCTTCCGCCTCAAATGCCCGAGCTAGGGTCTCTGT
TGGGGGCTGTGCCGCCGGTGACCGTGATGGTGCCCTATCCCATCATCATT
CCCCTGCCCATACCCATACCCGTTCCTCTGCCTGTGATAGATTTTTACAA
GGCACACCTAACTCCCGAGGAGAGGAAGCGTTTCGATGAGCAGCGGGCTG
CTCCAACCAGAGCGGAAAACGCAGAAGAACAGGAGCAACCACAGCCGCTG
GACTGCAGCAAAAGCAGAAGTGAGCTGGAGGAGGAGAAACCAGATGTGGA
GAAACTAAGTGAGCCTGGCCAGGAGCTGGACAACGATCAGGAAGAGGATG
AAAAGGAATCCATACCAAAGACAAATCCAGATGGGGACACCAACGCGGCT
TCGCCATCAATTTCACAGGAATCATCGTCTTCACCACAACAGACGCACTG
CATCGTCAGGGATTCTACGCAGTCCGAACCCGAGGCGGACAACCAGAAGC
TGCCCAAGCTGAAGATCACACGGCTGCAGACCAAGCGAACACTGATTCAA
ACCAAAGAGGCGGCGGCCGAGTGTAGTCGACCGCTGCGCAAGCGCAAAAG
GATCATCGACTGCGATTTCCAAAAAATGGGTCTTAAGGAACCGGAAATGG
CCAACGATGGCGAACAGAGCAACGGCAGTAGCAACAAGGAGGCGGATGCG
GATCCGGAAGCAGAGTGCAATATGAGCGGCAGCCACAGCAACAGTGGTAG
TGCTAAAGCTAAAAAGTAGACATAGACCTTAGGATTTACCCCTTAAAAGT
AGTAGAATGTATTTATCTATGTATGTGTGAGTGTGTCAGTGTGTTTGTGT
AAGCGGAAACGGAAATGGAGTCCAGAGGAGGAGAGGAATGCAGCAAAAGG
CACAAAGTGCATGCGGTACTCAGTTTTGATTCTTAATAAACTAAAATATA
ACTTATTGGAAAAAAAAAAAAAAAAAAAA

GH22790.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-RA 2963 Sobp-RA 83..2897 1..2815 14060 99.9 Plus
ptip.a 7656 ptip.a 1024..1071 641..688 195 93.7 Plus
ptip.b 8104 ptip.b 1024..1071 641..688 195 93.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7714473..7716412 2809..870 9580 99.6 Minus
chr2R 21145070 chr2R 7717261..7717731 871..401 2310 99.4 Minus
chr2R 21145070 chr2R 7726547..7726805 259..1 1295 100 Minus
chr2R 21145070 chr2R 7725170..7725313 403..260 720 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:03:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11827164..11829109 2815..870 9715 99.9 Minus
2R 25286936 2R 11829968..11830438 871..401 2355 100 Minus
2R 25286936 2R 11839272..11839530 259..1 1295 100 Minus
2R 25286936 2R 11837895..11838038 403..260 720 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11828363..11830308 2815..870 9715 99.9 Minus
2R 25260384 2R 11831167..11831637 871..401 2355 100 Minus
2R 25260384 2R 11840471..11840729 259..1 1295 100 Minus
2R 25260384 2R 11839094..11839237 403..260 720 100 Minus
3L 28103327 3L 14020808..14020855 688..641 195 93.7 Minus
Blast to na_te.dros performed 2019-03-15 12:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2607..2842 1508..1738 160 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6711..6917 1529..1731 140 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2537 1528..1717 133 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6840 1525..1568 130 77.3 Plus
roo 9092 roo DM_ROO 9092bp 1103..1168 1528..1594 126 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..6786 1528..1568 124 78 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6807 1528..1568 124 78 Plus
roo 9092 roo DM_ROO 9092bp 1115..1160 1528..1576 121 75.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2293..2354 1508..1569 120 69.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2382 1525..1573 119 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6788..6961 1528..1700 119 56.7 Plus

GH22790.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:38:15 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7717261..7717435 697..871 99 == Minus
chr2R 7714473..7716410 872..2809 99 <- Minus
chr2R 7717492..7717729 403..640 99 <- Minus
chr2R 7725171..7725313 260..402 100 <- Minus
chr2R 7726547..7726805 1..259 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:17:37 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2442 178..2619 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:44 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2442 178..2619 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:47:15 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2442 178..2619 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:26 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2442 178..2619 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:05:53 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2442 178..2619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:17:37 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2809 1..2809 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:44 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2809 1..2809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:47:15 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 15..2823 1..2809 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:27 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 1..2809 1..2809 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:05:53 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
Sobp-RA 296..3104 1..2809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:15 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11827170..11829107 872..2809 100 <- Minus
2R 11829968..11830436 403..871 100 <- Minus
2R 11837896..11838038 260..402 100 <- Minus
2R 11839272..11839530 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:15 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11827170..11829107 872..2809 100 <- Minus
2R 11829968..11830436 403..871 100 <- Minus
2R 11837896..11838038 260..402 100 <- Minus
2R 11839272..11839530 1..259 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:15 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11827170..11829107 872..2809 100 <- Minus
2R 11829968..11830436 403..871 100 <- Minus
2R 11837896..11838038 260..402 100 <- Minus
2R 11839272..11839530 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:47:15 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7714675..7716612 872..2809 100 <- Minus
arm_2R 7717473..7717941 403..871 100 <- Minus
arm_2R 7725401..7725543 260..402 100 <- Minus
arm_2R 7726777..7727035 1..259 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:34 Download gff for GH22790.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11828369..11830306 872..2809 100 <- Minus
2R 11831167..11831635 403..871 100 <- Minus
2R 11839095..11839237 260..402 100 <- Minus
2R 11840471..11840729 1..259 100   Minus

GH22790.pep Sequence

Translation from 177 to 2618

> GH22790.pep
MSFLDVRCFGKSIARKLKRACESRKANFSPESYIPHPVEMSAKTSPSSTS
RDANVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLD
LTAKTSRLLQSAAAAAVANQQSHQLHQLEPHPNLERKRTSLLRSSSRSSL
AAAYHNNNNNNNNNNNGSSSKNNGGVGGVGVGSGRKSGLMNCSSTTTTPS
DHDTRSSREEDSKSPHSIGKPAGAAHTDEKIDFSNCCWCHRPIAENAPDY
LTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQDGASQ
LQFCSEKCLNQYKMQIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLW
LRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPSKPLISVAPVS
KLLAQKSPGPGPGAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETVASL
LQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQQQAPQ
VPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHG
MMPRGFGPHFGPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVP
LPVIDFYKAHLTPEERKRFDEQRAAPTRAENAEEQEQPQPLDCSKSRSEL
EEEKPDVEKLSEPGQELDNDQEEDEKESIPKTNPDGDTNAASPSISQESS
SSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTKRTLIQTKEAAAECS
RPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPEAECNMS
GSHSNSGSAKAKK*

GH22790.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13404-PA 796 GF13404-PA 1..796 40..813 2330 74.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22630-PA 819 GG22630-PA 1..819 1..813 3129 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22884-PA 779 GH22884-PA 1..776 40..813 1607 56.4 Plus
Dgri\GH23714-PA 293 GH23714-PA 107..289 192..374 879 86.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-PB 813 CG8991-PB 1..813 1..813 4340 100 Plus
Sobp-PA 813 CG8991-PA 1..813 1..813 4340 100 Plus
CG15021-PA 420 CG15021-PA 55..320 367..703 177 26.1 Plus
ena-PE 684 CG15112-PE 279..462 390..580 166 34.5 Plus
ena-PC 684 CG15112-PC 279..462 390..580 166 34.5 Plus
ena-PA 684 CG15112-PA 279..462 390..580 166 34.5 Plus
ena-PD 687 CG15112-PD 282..465 390..580 166 34.5 Plus
ena-PB 834 CG15112-PB 428..611 390..580 166 34.5 Plus
ena-PF 980 CG15112-PF 575..758 390..580 166 34.5 Plus
CG9411-PA 993 CG9411-PA 463..674 356..567 162 30.6 Plus
ena-PG 664 CG15112-PG 278..442 415..580 161 35.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21269-PA 833 GI21269-PA 140..784 185..776 1485 61.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10250-PA 824 GL10250-PA 1..824 40..813 2001 64.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21459-PB 852 GA21459-PB 56..852 35..813 2004 66.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20408-PA 812 GM20408-PA 1..812 1..813 4126 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25884-PA 812 GD25884-PA 1..812 1..813 4143 96.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20872-PA 850 GJ20872-PA 143..795 185..773 1470 61.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17919-PA 799 GK17919-PA 1..784 40..791 1681 60.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13499-PA 836 GE13499-PA 1..836 1..813 3148 88.4 Plus

GH22790.hyp Sequence

Translation from 177 to 2618

> GH22790.hyp
MSFLDVRCFGKSIARKLKRACESRKANFSPESYIPHPVEMSAKTSPSSTS
RDANVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLD
LTAKTSRLLQSAAAAAVANQQSHQLHQLEPHPNLERKRTSLLRSSSRSSL
AAAYHNNNNNNNNNNNGSSSKNNGGVGGVGVGSGRKSGLMNCSSTTTTPS
DHDTRSSREEDSKSPHSIGKPAGAAHTDEKIDFSNCCWCHRPIAENAPDY
LTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQDGASQ
LQFCSEKCLNQYKMQIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLW
LRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPSKPLISVAPVS
KLLAQKSPGPGPGAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETVASL
LQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQQQAPQ
VPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHG
MMPRGFGPHFGPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVP
LPVIDFYKAHLTPEERKRFDEQRAAPTRAENAEEQEQPQPLDCSKSRSEL
EEEKPDVEKLSEPGQELDNDQEEDEKESIPKTNPDGDTNAASPSISQESS
SSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTKRTLIQTKEAAAECS
RPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPEAECNMS
GSHSNSGSAKAKK*

GH22790.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sobp-PB 813 CG8991-PB 1..813 1..813 4340 100 Plus
Sobp-PA 813 CG8991-PA 1..813 1..813 4340 100 Plus
CG15021-PA 420 CG15021-PA 55..320 367..703 177 26.1 Plus
ena-PE 684 CG15112-PE 279..462 390..580 166 34.5 Plus
ena-PC 684 CG15112-PC 279..462 390..580 166 34.5 Plus