BDGP Sequence Production Resources |
Search the DGRC for GH22790
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 227 |
Well: | 90 |
Vector: | pOT2 |
Associated Gene/Transcript | Sobp-RA |
Protein status: | GH22790.pep: gold |
Preliminary Size: | 2750 |
Sequenced Size: | 2829 |
Gene | Date | Evidence |
---|---|---|
CG8991 | 2001-01-01 | Release 2 assignment |
CG8991 | 2001-09-19 | Blastp of sequenced clone |
CG8991 | 2003-01-01 | Sim4 clustering to Release 3 |
Sobp | 2008-04-29 | Release 5.5 accounting |
Sobp | 2008-08-15 | Release 5.9 accounting |
Sobp | 2008-12-18 | 5.12 accounting |
2829 bp (2829 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058444
> GH22790.complete AAACGCGAACGCGTGTGGACGTGGATGTGCGCGGTACCGCTTCGAAAAAA AAATTTGTGAACGCGAATCGGTATATTCGGTTTGGTCGGATTAAACGGTT GATTCGAAACGAATTCTCGGGCCGTGCATGTGTGAAAGTGAAAACTGAAG AAAGAGGAATGAAAATGAGCACGGTGCATGAGTTTCCTTGACGTTCGTTG CTTCGGAAAATCCATCGCAAGAAAACTGAAAAGAGCGTGCGAAAGCAGAA AGGCCAATTTTTCACCCGAAAGTTATATACCGCATCCAGTTGAAATGTCC GCCAAGACGTCGCCATCGTCCACTTCTCGGGATGCCAACGTGGGATCCTC GAGTGCGATTCCCGTTCAGATCAAAAAAGAACTGCCCAGCGATGAGATAA AGGAATTCGCGCACAACACCATGAACGAGCTGCTCGGCTGGTATGGATTC GAGGGTGTGGATGTGGATCGTCTCGACCTGACCGCCAAAACGTCGCGCCT GCTGCAAAGTGCCGCCGCCGCAGCTGTGGCCAATCAGCAGAGCCACCAGC TTCACCAGTTGGAGCCGCATCCGAATCTGGAGCGGAAGCGGACCAGTCTG CTTCGCAGTAGCAGTCGCAGTTCCTTGGCAGCGGCCTACCACAACAACAA CAACAACAATAATAACAACAACAACGGCAGCAGCAGCAAGAACAACGGAG GAGTCGGCGGCGTAGGCGTTGGGAGTGGTCGGAAGAGCGGGTTGATGAAC TGCAGCAGCACCACCACCACGCCATCGGACCACGACACGCGAAGCTCACG GGAGGAGGATTCCAAGAGTCCGCACTCCATCGGGAAGCCAGCGGGAGCTG CGCACACGGATGAGAAAATAGACTTCAGCAATTGCTGCTGGTGCCATCGA CCGATTGCGGAGAATGCGCCGGACTACCTGACCAGCTGCGACGGACCGCG CTACTGCTCCGAATCCTGCTTCGCCCAGAGCCGGAGGGCATCCTTCAAGA AGGCCAAGACCTGCGACTGGTGCAAGCATGTGCGCCACGCGGTTAGCTAC GTGGACTTTCAGGACGGCGCCTCCCAGCTACAGTTCTGCTCGGAGAAGTG CCTCAACCAGTACAAGATGCAGATCTTCTGCCACGAAACCCAGGCGCACC TGGACATGCATCCGCACCTGCGGGATCAGGCCATGGATGCGGGCAGCGAG GCTGGGCTGATAACGCCGGATCTGTGGCTTCGAAACTGCAGGAGTCGCTC GGCCTCGCCCGCCTCCACGCTCTCGGTGTCTCCGGGTCCGCCGCCTGCTC CGGCTGTCAGTCGCTGTCCGGACTCACCGCCTAGTCATCATCCCAGCAAA CCTTTGATCTCAGTGGCACCCGTCTCGAAGTTGCTGGCCCAGAAGAGTCC GGGTCCCGGACCCGGAGCCCCTCCACCACCGCCACCGCCTGTCCAGCGGC ATTTGGCGGGAAAGTTGGGTCGCCGCAAGCGCCGAGGTATTTCCTCTTCC TTGGGCTCGGAAACTGTGGCCAGTCTGCTGCAGAAACAGCAGCAGCAACA GGCACCGCAGCAACATCAGGCACCTCCCACGCTAACGGCTGACTTTGGTG GATCCAGCGTACCACTGCCTCCGCTCTCGCCCATGCCCAGCATGCAGGAG GCACCACAACAGCAGCAGGCTCCTCAGGTGCCACCAACACAAGCCCTGCC ACGGGGACCAACAGCCATCCCGGCCAGCTACTTCGCGACGCCTTCGAATG GTGTGCCCATGGGACATCCGTTTGCGGGGCGCCCACCGCCGCCTCCGCAT CACTTTATGCATCCACCTCCGCATGGCATGATGCCTCGTGGATTTGGTCC GCACTTCGGGCCACCGCTTCCGCCTCAAATGCCCGAGCTAGGGTCTCTGT TGGGGGCTGTGCCGCCGGTGACCGTGATGGTGCCCTATCCCATCATCATT CCCCTGCCCATACCCATACCCGTTCCTCTGCCTGTGATAGATTTTTACAA GGCACACCTAACTCCCGAGGAGAGGAAGCGTTTCGATGAGCAGCGGGCTG CTCCAACCAGAGCGGAAAACGCAGAAGAACAGGAGCAACCACAGCCGCTG GACTGCAGCAAAAGCAGAAGTGAGCTGGAGGAGGAGAAACCAGATGTGGA GAAACTAAGTGAGCCTGGCCAGGAGCTGGACAACGATCAGGAAGAGGATG AAAAGGAATCCATACCAAAGACAAATCCAGATGGGGACACCAACGCGGCT TCGCCATCAATTTCACAGGAATCATCGTCTTCACCACAACAGACGCACTG CATCGTCAGGGATTCTACGCAGTCCGAACCCGAGGCGGACAACCAGAAGC TGCCCAAGCTGAAGATCACACGGCTGCAGACCAAGCGAACACTGATTCAA ACCAAAGAGGCGGCGGCCGAGTGTAGTCGACCGCTGCGCAAGCGCAAAAG GATCATCGACTGCGATTTCCAAAAAATGGGTCTTAAGGAACCGGAAATGG CCAACGATGGCGAACAGAGCAACGGCAGTAGCAACAAGGAGGCGGATGCG GATCCGGAAGCAGAGTGCAATATGAGCGGCAGCCACAGCAACAGTGGTAG TGCTAAAGCTAAAAAGTAGACATAGACCTTAGGATTTACCCCTTAAAAGT AGTAGAATGTATTTATCTATGTATGTGTGAGTGTGTCAGTGTGTTTGTGT AAGCGGAAACGGAAATGGAGTCCAGAGGAGGAGAGGAATGCAGCAAAAGG CACAAAGTGCATGCGGTACTCAGTTTTGATTCTTAATAAACTAAAATATA ACTTATTGGAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 7714473..7716412 | 2809..870 | 9580 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 7717261..7717731 | 871..401 | 2310 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 7726547..7726805 | 259..1 | 1295 | 100 | Minus |
chr2R | 21145070 | chr2R | 7725170..7725313 | 403..260 | 720 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 11827164..11829109 | 2815..870 | 9715 | 99.9 | Minus |
2R | 25286936 | 2R | 11829968..11830438 | 871..401 | 2355 | 100 | Minus |
2R | 25286936 | 2R | 11839272..11839530 | 259..1 | 1295 | 100 | Minus |
2R | 25286936 | 2R | 11837895..11838038 | 403..260 | 720 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 11828363..11830308 | 2815..870 | 9715 | 99.9 | Minus |
2R | 25260384 | 2R | 11831167..11831637 | 871..401 | 2355 | 100 | Minus |
2R | 25260384 | 2R | 11840471..11840729 | 259..1 | 1295 | 100 | Minus |
2R | 25260384 | 2R | 11839094..11839237 | 403..260 | 720 | 100 | Minus |
3L | 28103327 | 3L | 14020808..14020855 | 688..641 | 195 | 93.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2607..2842 | 1508..1738 | 160 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6917 | 1529..1731 | 140 | 57.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2537 | 1528..1717 | 133 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6840 | 1525..1568 | 130 | 77.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1103..1168 | 1528..1594 | 126 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6786 | 1528..1568 | 124 | 78 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6807 | 1528..1568 | 124 | 78 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1115..1160 | 1528..1576 | 121 | 75.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2354 | 1508..1569 | 120 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2382 | 1525..1573 | 119 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6961 | 1528..1700 | 119 | 56.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 7717261..7717435 | 697..871 | 99 | == | Minus |
chr2R | 7714473..7716410 | 872..2809 | 99 | <- | Minus |
chr2R | 7717492..7717729 | 403..640 | 99 | <- | Minus |
chr2R | 7725171..7725313 | 260..402 | 100 | <- | Minus |
chr2R | 7726547..7726805 | 1..259 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2442 | 178..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2442 | 178..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2442 | 178..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2442 | 178..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2442 | 178..2619 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2809 | 1..2809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2809 | 1..2809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 15..2823 | 1..2809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 1..2809 | 1..2809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sobp-RA | 296..3104 | 1..2809 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11827170..11829107 | 872..2809 | 100 | <- | Minus |
2R | 11829968..11830436 | 403..871 | 100 | <- | Minus |
2R | 11837896..11838038 | 260..402 | 100 | <- | Minus |
2R | 11839272..11839530 | 1..259 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11827170..11829107 | 872..2809 | 100 | <- | Minus |
2R | 11829968..11830436 | 403..871 | 100 | <- | Minus |
2R | 11837896..11838038 | 260..402 | 100 | <- | Minus |
2R | 11839272..11839530 | 1..259 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11827170..11829107 | 872..2809 | 100 | <- | Minus |
2R | 11829968..11830436 | 403..871 | 100 | <- | Minus |
2R | 11837896..11838038 | 260..402 | 100 | <- | Minus |
2R | 11839272..11839530 | 1..259 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 7714675..7716612 | 872..2809 | 100 | <- | Minus |
arm_2R | 7717473..7717941 | 403..871 | 100 | <- | Minus |
arm_2R | 7725401..7725543 | 260..402 | 100 | <- | Minus |
arm_2R | 7726777..7727035 | 1..259 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 11828369..11830306 | 872..2809 | 100 | <- | Minus |
2R | 11831167..11831635 | 403..871 | 100 | <- | Minus |
2R | 11839095..11839237 | 260..402 | 100 | <- | Minus |
2R | 11840471..11840729 | 1..259 | 100 | Minus |
Translation from 177 to 2618
> GH22790.pep MSFLDVRCFGKSIARKLKRACESRKANFSPESYIPHPVEMSAKTSPSSTS RDANVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLD LTAKTSRLLQSAAAAAVANQQSHQLHQLEPHPNLERKRTSLLRSSSRSSL AAAYHNNNNNNNNNNNGSSSKNNGGVGGVGVGSGRKSGLMNCSSTTTTPS DHDTRSSREEDSKSPHSIGKPAGAAHTDEKIDFSNCCWCHRPIAENAPDY LTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQDGASQ LQFCSEKCLNQYKMQIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLW LRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPSKPLISVAPVS KLLAQKSPGPGPGAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETVASL LQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQQQAPQ VPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHG MMPRGFGPHFGPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVP LPVIDFYKAHLTPEERKRFDEQRAAPTRAENAEEQEQPQPLDCSKSRSEL EEEKPDVEKLSEPGQELDNDQEEDEKESIPKTNPDGDTNAASPSISQESS SSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTKRTLIQTKEAAAECS RPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPEAECNMS GSHSNSGSAKAKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13404-PA | 796 | GF13404-PA | 1..796 | 40..813 | 2330 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22630-PA | 819 | GG22630-PA | 1..819 | 1..813 | 3129 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22884-PA | 779 | GH22884-PA | 1..776 | 40..813 | 1607 | 56.4 | Plus |
Dgri\GH23714-PA | 293 | GH23714-PA | 107..289 | 192..374 | 879 | 86.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sobp-PB | 813 | CG8991-PB | 1..813 | 1..813 | 4340 | 100 | Plus |
Sobp-PA | 813 | CG8991-PA | 1..813 | 1..813 | 4340 | 100 | Plus |
CG15021-PA | 420 | CG15021-PA | 55..320 | 367..703 | 177 | 26.1 | Plus |
ena-PE | 684 | CG15112-PE | 279..462 | 390..580 | 166 | 34.5 | Plus |
ena-PC | 684 | CG15112-PC | 279..462 | 390..580 | 166 | 34.5 | Plus |
ena-PA | 684 | CG15112-PA | 279..462 | 390..580 | 166 | 34.5 | Plus |
ena-PD | 687 | CG15112-PD | 282..465 | 390..580 | 166 | 34.5 | Plus |
ena-PB | 834 | CG15112-PB | 428..611 | 390..580 | 166 | 34.5 | Plus |
ena-PF | 980 | CG15112-PF | 575..758 | 390..580 | 166 | 34.5 | Plus |
CG9411-PA | 993 | CG9411-PA | 463..674 | 356..567 | 162 | 30.6 | Plus |
ena-PG | 664 | CG15112-PG | 278..442 | 415..580 | 161 | 35.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21269-PA | 833 | GI21269-PA | 140..784 | 185..776 | 1485 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10250-PA | 824 | GL10250-PA | 1..824 | 40..813 | 2001 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21459-PB | 852 | GA21459-PB | 56..852 | 35..813 | 2004 | 66.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20408-PA | 812 | GM20408-PA | 1..812 | 1..813 | 4126 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25884-PA | 812 | GD25884-PA | 1..812 | 1..813 | 4143 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20872-PA | 850 | GJ20872-PA | 143..795 | 185..773 | 1470 | 61.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17919-PA | 799 | GK17919-PA | 1..784 | 40..791 | 1681 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13499-PA | 836 | GE13499-PA | 1..836 | 1..813 | 3148 | 88.4 | Plus |
Translation from 177 to 2618
> GH22790.hyp MSFLDVRCFGKSIARKLKRACESRKANFSPESYIPHPVEMSAKTSPSSTS RDANVGSSSAIPVQIKKELPSDEIKEFAHNTMNELLGWYGFEGVDVDRLD LTAKTSRLLQSAAAAAVANQQSHQLHQLEPHPNLERKRTSLLRSSSRSSL AAAYHNNNNNNNNNNNGSSSKNNGGVGGVGVGSGRKSGLMNCSSTTTTPS DHDTRSSREEDSKSPHSIGKPAGAAHTDEKIDFSNCCWCHRPIAENAPDY LTSCDGPRYCSESCFAQSRRASFKKAKTCDWCKHVRHAVSYVDFQDGASQ LQFCSEKCLNQYKMQIFCHETQAHLDMHPHLRDQAMDAGSEAGLITPDLW LRNCRSRSASPASTLSVSPGPPPAPAVSRCPDSPPSHHPSKPLISVAPVS KLLAQKSPGPGPGAPPPPPPPVQRHLAGKLGRRKRRGISSSLGSETVASL LQKQQQQQAPQQHQAPPTLTADFGGSSVPLPPLSPMPSMQEAPQQQQAPQ VPPTQALPRGPTAIPASYFATPSNGVPMGHPFAGRPPPPPHHFMHPPPHG MMPRGFGPHFGPPLPPQMPELGSLLGAVPPVTVMVPYPIIIPLPIPIPVP LPVIDFYKAHLTPEERKRFDEQRAAPTRAENAEEQEQPQPLDCSKSRSEL EEEKPDVEKLSEPGQELDNDQEEDEKESIPKTNPDGDTNAASPSISQESS SSPQQTHCIVRDSTQSEPEADNQKLPKLKITRLQTKRTLIQTKEAAAECS RPLRKRKRIIDCDFQKMGLKEPEMANDGEQSNGSSNKEADADPEAECNMS GSHSNSGSAKAKK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sobp-PB | 813 | CG8991-PB | 1..813 | 1..813 | 4340 | 100 | Plus |
Sobp-PA | 813 | CG8991-PA | 1..813 | 1..813 | 4340 | 100 | Plus |
CG15021-PA | 420 | CG15021-PA | 55..320 | 367..703 | 177 | 26.1 | Plus |
ena-PE | 684 | CG15112-PE | 279..462 | 390..580 | 166 | 34.5 | Plus |
ena-PC | 684 | CG15112-PC | 279..462 | 390..580 | 166 | 34.5 | Plus |