Clone GH22889 Report

Search the DGRC for GH22889

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:228
Well:89
Vector:pOT2
Associated Gene/TranscriptCG17843-RA
Protein status:GH22889.pep: gold
Preliminary Size:1749
Sequenced Size:1807

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17843 2001-01-01 Release 2 assignment
CG17843 2001-12-12 Blastp of sequenced clone
CG17843 2003-01-01 Sim4 clustering to Release 3
CG17843 2008-04-29 Release 5.5 accounting
CG17843 2008-08-15 Release 5.9 accounting
CG17843 2008-12-18 5.12 accounting

Clone Sequence Records

GH22889.complete Sequence

1807 bp (1807 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070518

> GH22889.complete
TGAGCACAGTGTGGAAATGATTCGGCTACTCAAGACGCTTCTTTATTGCC
TGCTCCTCATCTCCCCTGCTGATGTGCTGGGCCGGCTTAATGCCAGAAAG
TCGGCGAACGAGGCGAGTCTCTATAGCGATACAGACAATGTGATTATGTT
GGACATCGAATCGCTGAGGCCAGCTCTAAACTTGAAGAACAGCAAGCTGG
TTCAGTTCCTCAACAGCTTCTGCGGTGACTGTCATCGCTTCGCACCGGTC
TTCAAGACCCTTTCCCGCGACCTCTACAAGTGGCGAAGAATTCTCCGGAT
CTATGCCGTAGATTGTGCCCAGGAGAGAAATGCTCAACTCTGCAGGGAAT
TCAATATCCGCCAGACGCCATCATTGCGATTCTTTGGTCCCGACATGAGG
AAGAACGATGATGTTCTTGGAGCGGTAATCCCAGGCCAAGATCCCGAGTT
CATTAGCTCAACACTGGCCGAATTGGTATCCCAAAATGACTATGGACCCG
GCCAGCCAAACTTTCGTCCCCTAAAAGCAACAGACTATGAAATTTTCCAA
GATCAAGATGGGGAAACTCCGATACAATTTGTGGCTCTTGTCCTTCAGCC
AAAAAATTCAAAGATCGGCAGGGACACGCTGCTAGAACTGCTGCCATTCA
AAGAGCTATCGGTGAGGATAATCGAAGATTCTCAGATATTTAACGAATTT
GGACTGGGTCCCGACGACCAAAAACTGGCTATAGTTGATAGAAATGGAAC
CGCCCAGTATCTTACACCATCTTCGGACTCCAGTGAAGCGTATGCCAGCA
CTATTGGAGACTTCCTTAAGAACCGCAATATTCAGCCAGATCCACCACTA
CCCATCGCTGTAGCCCCAAACTTTACTGAGTTTCTGGATCACCAAAATCA
AGCGATACTAACTAAAGTGCTTACGCCACCACTGCAGGTCTATCGTGCCG
ACTTGGAGCAGGCAATCGATAAACTGCTGCACATTGAGCTTCGTAAATGG
GTCCTTTTGGAGGGTAATAGCCTGAATGCTCTTAAAAATATTATTAAGAT
TTTCCGATACCTGAATCCATTGAACAAGGACGGAAAGCTATTGCTGACTG
ACCTGGACAACTCGTTGAGCTCGAAGCAGAGTATAAAGGGAGCCGACTTT
GGTGATTTGGTTGATTCGCTTGAAAATGGTCGAAGGGTGTTTAAGGCAAG
GCGATACGTTGGCTGCATTGGATCGCGGCCATTACTGCGAAGCTTTACCT
GCTCTATGTGGACACTGTTTCACCATTTGACCGTGGAGGCAGCTAAGCCA
CCAAATTACTTTGAGGCGGGCTCAATACTGAAAACCTTTCATGGATTCGC
CAAGTACTTCTTCGGCTGCACGGATTGCTCTGAACACTTTCAGCAGATGG
CCATTCGTCGTAATCTGACTTCGGTGAAAACCCATGACGAGGAGATCCTC
TGGCTGTGGGCAGCCCACAACGAAGTCAATGCACGCATTGCTGGAGACTC
TACGGAGGATCCCAAGTTCCCGAAGATTCAGTTCCCCAGCGCGGAGAATT
GCCCCACTTGCCGGTCAAATGACTCGGAGTGGAGAACAGATGAAGTTCTT
AAGTATCTGAAACAGCTCTACGATATCAATAATGTAAGCTTTTATGGCCT
TCCCACTCCACAGGGATACGATTAGCGATTTACTTTAAAATCTTTGACTA
ATCTTAACACCTATTGCATGAACGAGTTTTGTGAACCAATTTTATTAAAT
AAATTAAATATAAATAACATAGACAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

GH22889.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17843-RA 1800 CG17843-RA 25..1800 1..1776 8865 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17737462..17739235 1..1774 8570 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:03:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21913773..21915548 1..1776 8865 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21654604..21656379 1..1776 8865 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 03:51:39 has no hits.

GH22889.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:52:39 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17737462..17739196 1..1735 98 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:53:04 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 1..1659 17..1675 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:01 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 1..1659 17..1675 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:42 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 1..1659 17..1675 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:09 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 1..1659 17..1675 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:42 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 1..1659 17..1675 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:15 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 25..1798 1..1774 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:01 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 25..1798 1..1774 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:42 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 27..1800 1..1774 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:09 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 25..1798 1..1774 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:42 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
CG17843-RA 27..1800 1..1774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:39 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21913773..21915546 1..1774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:39 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21913773..21915546 1..1774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:39 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21913773..21915546 1..1774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:42 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17739495..17741268 1..1774 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:30 Download gff for GH22889.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21654604..21656377 1..1774 99   Plus

GH22889.hyp Sequence

Translation from 0 to 1674

> GH22889.hyp
EHSVEMIRLLKTLLYCLLLISPADVLGRLNARKSANEASLYSDTDNVIML
DIESLRPALNLKNSKLVQFLNSFCGDCHRFAPVFKTLSRDLYKWRRILRI
YAVDCAQERNAQLCREFNIRQTPSLRFFGPDMRKNDDVLGAVIPGQDPEF
ISSTLAELVSQNDYGPGQPNFRPLKATDYEIFQDQDGETPIQFVALVLQP
KNSKIGRDTLLELLPFKELSVRIIEDSQIFNEFGLGPDDQKLAIVDRNGT
AQYLTPSSDSSEAYASTIGDFLKNRNIQPDPPLPIAVAPNFTEFLDHQNQ
AILTKVLTPPLQVYRADLEQAIDKLLHIELRKWVLLEGNSLNALKNIIKI
FRYLNPLNKDGKLLLTDLDNSLSSKQSIKGADFGDLVDSLENGRRVFKAR
RYVGCIGSRPLLRSFTCSMWTLFHHLTVEAAKPPNYFEAGSILKTFHGFA
KYFFGCTDCSEHFQQMAIRRNLTSVKTHDEEILWLWAAHNEVNARIAGDS
TEDPKFPKIQFPSAENCPTCRSNDSEWRTDEVLKYLKQLYDINNVSFYGL
PTPQGYD*

GH22889.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17843-PA 552 CG17843-PA 1..552 6..557 2896 100 Plus
CG6690-PA 562 CG6690-PA 10..540 14..546 995 39.8 Plus
CG31413-PA 561 CG31413-PA 11..553 12..550 970 37.9 Plus
CG4670-PB 637 CG4670-PB 44..570 40..550 865 35.8 Plus
CG4670-PA 637 CG4670-PA 44..570 40..550 865 35.8 Plus

GH22889.pep Sequence

Translation from 16 to 1674

> GH22889.pep
MIRLLKTLLYCLLLISPADVLGRLNARKSANEASLYSDTDNVIMLDIESL
RPALNLKNSKLVQFLNSFCGDCHRFAPVFKTLSRDLYKWRRILRIYAVDC
AQERNAQLCREFNIRQTPSLRFFGPDMRKNDDVLGAVIPGQDPEFISSTL
AELVSQNDYGPGQPNFRPLKATDYEIFQDQDGETPIQFVALVLQPKNSKI
GRDTLLELLPFKELSVRIIEDSQIFNEFGLGPDDQKLAIVDRNGTAQYLT
PSSDSSEAYASTIGDFLKNRNIQPDPPLPIAVAPNFTEFLDHQNQAILTK
VLTPPLQVYRADLEQAIDKLLHIELRKWVLLEGNSLNALKNIIKIFRYLN
PLNKDGKLLLTDLDNSLSSKQSIKGADFGDLVDSLENGRRVFKARRYVGC
IGSRPLLRSFTCSMWTLFHHLTVEAAKPPNYFEAGSILKTFHGFAKYFFG
CTDCSEHFQQMAIRRNLTSVKTHDEEILWLWAAHNEVNARIAGDSTEDPK
FPKIQFPSAENCPTCRSNDSEWRTDEVLKYLKQLYDINNVSFYGLPTPQG
YD*

GH22889.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18057-PA 540 GF18057-PA 1..540 1..552 1662 56.7 Plus
Dana\GF18056-PA 776 GF18056-PA 296..772 71..551 1131 45.8 Plus
Dana\GF11199-PA 636 GF11199-PA 45..569 34..545 896 36 Plus
Dana\GF18055-PA 561 GF18055-PA 73..561 59..552 798 35.3 Plus
Dana\GF18058-PA 778 GF18058-PA 413..778 189..546 483 34.1 Plus
Dana\GF18056-PA 776 GF18056-PA 5..256 293..541 425 36.8 Plus
Dana\GF18058-PA 778 GF18058-PA 25..379 28..332 404 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11096-PA 553 GG11096-PA 1..553 1..552 2515 86.5 Plus
Dere\GG11219-PA 560 GG11219-PA 21..555 33..551 1069 40.5 Plus
Dere\GG11095-PA 564 GG11095-PA 10..549 10..546 1069 41.8 Plus
Dere\GG22509-PA 635 GG22509-PA 44..568 35..545 880 36.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20920-PA 559 GH20920-PA 26..559 30..552 1222 47.2 Plus
Dgri\GH20280-PA 643 GH20280-PA 46..579 34..549 937 36.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Qsox2-PA 552 CG17843-PA 1..552 1..552 2896 100 Plus
Qsox3-PA 562 CG6690-PA 10..540 9..541 995 39.8 Plus
Qsox4-PA 561 CG31413-PA 11..553 7..545 970 37.9 Plus
Qsox1-PB 637 CG4670-PB 44..570 35..545 865 35.8 Plus
Qsox1-PA 637 CG4670-PA 44..570 35..545 865 35.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10722-PA 545 GI10722-PA 17..545 29..552 1232 47.6 Plus
Dmoj\GI19451-PA 646 GI19451-PA 11..578 5..545 960 37.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:14:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20935-PA 542 GL20935-PA 1..538 1..544 1440 51.5 Plus
Dper\GL23804-PA 554 GL23804-PA 22..553 18..551 1274 48.3 Plus
Dper\GL10907-PA 638 GL10907-PA 43..571 34..545 913 37.3 Plus
Dper\GL23805-PA 265 GL23805-PA 82..264 96..272 200 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27058-PA 559 GA27058-PA 21..558 18..551 1444 52.1 Plus
Dpse\GA28634-PA 548 GA28634-PA 1..544 1..544 1436 51.8 Plus
Dpse\GA18343-PA 638 GA18343-PA 43..571 34..545 913 37.3 Plus
Dpse\GA27059-PA 265 GA27059-PA 82..264 96..272 190 29 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26387-PA 564 GM26387-PA 22..541 22..541 1014 41.6 Plus
Dsec\GM26521-PA 561 GM26521-PA 11..555 7..547 986 37.2 Plus
Dsec\GM26712-PA 561 GM26712-PA 11..555 7..547 986 37.2 Plus
Dsec\GM20295-PA 636 GM20295-PA 43..569 34..545 891 36.2 Plus
Dsec\GM26388-PA 174 GM26388-PA 1..171 1..171 813 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20911-PA 552 GD20911-PA 1..552 1..552 2753 95.3 Plus
Dsim\GD20910-PA 564 GD20910-PA 22..541 22..541 1027 42 Plus
Dsim\GD21029-PA 561 GD21029-PA 11..555 7..547 993 37.6 Plus
Dsim\GD25776-PA 636 GD25776-PA 43..569 34..545 902 36.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23137-PA 548 GJ23137-PA 16..548 29..552 1228 47.2 Plus
Dvir\GJ21201-PA 646 GJ21201-PA 15..578 8..545 967 37.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14087-PA 645 GK14087-PA 44..577 34..545 877 35.5 Plus
Dwil\GK14235-PA 232 GK14235-PA 8..212 31..230 404 41.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10256-PA 554 GE10256-PA 1..554 1..552 2576 88.8 Plus
Dyak\GE10255-PA 558 GE10255-PA 22..547 22..546 1097 42.9 Plus
Dyak\GE10385-PA 571 GE10385-PA 8..555 8..551 1030 37.9 Plus
Dyak\GE13379-PA 636 GE13379-PA 43..569 34..545 873 35.8 Plus