Clone GH23064 Report

Search the DGRC for GH23064

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:230
Well:64
Vector:pOT2
Associated Gene/TranscriptCG10993-RA
Protein status:GH23064.pep: gold
Preliminary Size:1185
Sequenced Size:725

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10993 2002-01-01 Sim4 clustering to Release 2
CG10993 2002-05-18 Blastp of sequenced clone
CG10993 2003-01-01 Sim4 clustering to Release 3
CG10993 2008-04-29 Release 5.5 accounting
CG10993 2008-08-15 Release 5.9 accounting
CG10993 2008-12-18 5.12 accounting

Clone Sequence Records

GH23064.complete Sequence

725 bp (725 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118812

> GH23064.complete
TTATTTTTGCCCCACGAGAACGTAAACTACAATGAAGGAAATAAAAAAGA
AATCAAAGCCAAAACGCAAGCCCACTCGCATGGAAGTGGAGGAGAGTGAG
CCTGAGATGCCGTTCTCTTATAAGACGCAGCCAGATGAAGGTGAGTCTGT
GAATGGGGAGGCACATACCTCGGATGACGGCGATGAAATGGAGCTGGCCA
CCTTCAAAGCCGCCAGCAAGAAGGGTGTCATCTACATATCCAACCTACCC
AAGCACATGACCTTGACCCGCCTGCGTGAAATCTTGGGCGAGTACGGTGC
CATCGGCAGAGCTTTCCTGCGGTCGCAGAAGCTGTCAAGAAAGCCTCATA
ATTTCCTCTTCGCCGAGGGTTGGGTGGAATTCAAATCGAAACGTGTGGCC
AAACAGATCGTTCCACTGCTCAACTACAAGCAGATATCCACGCACAAGAA
GTCCCCATTTTATTACTCACTGTGGATCATGGAGTACCTGCCGCGCTTCA
AGTGGGCCCGTCTAAACGAACTCATGAACATCGTGCCGGTCACCAACTCT
CAGAACCATCTCAAGTTCCTCAATAAGAAGGCGAAGAAGGCCAAGAAAGT
TAAGAAAGCCAAGAAGGCTCTGGCTGACAGACTTCTTGAGTTAGTGCTAG
CCTCTAGCATCTAATGTTAACTAGATTGCAAATATACTTAAATAAAGTAG
ATCAAATGAAAAAAAAAAAAAAAAA

GH23064.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10993-RA 765 CG10993-RA 54..765 1..712 3560 100 Plus
CG40813-RA 882 CG40813-RA 322..803 217..704 1710 90.3 Plus
CG41562-RA 810 CG41562-RA 295..776 217..704 1695 90.1 Plus
CG40813-RA 882 CG40813-RA 96..190 6..100 430 96.8 Plus
CG41562-RA 810 CG41562-RA 69..163 6..100 430 96.8 Plus
CG40813-RA 882 CG40813-RA 206..296 128..218 335 91.2 Plus
CG41562-RA 810 CG41562-RA 179..269 128..218 335 91.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13681067..13681436 708..339 1850 100 Minus
chrX 22417052 chrX 13681495..13681833 339..1 1695 100 Minus
chrU 10048995 chrU 3136671..3137034 341..704 1310 90.7 Plus
chrU 10048995 chrU 5467442..5467805 341..704 1310 90.7 Plus
chrU 10048995 chrU 3136254..3136454 6..218 595 86.4 Plus
chrU 10048995 chrU 5467025..5467225 6..218 595 86.4 Plus
chrX 22417052 chrX 8978231..8978419 341..529 525 85.2 Plus
chrU 10048995 chrU 3136480..3136591 217..328 470 94.6 Plus
chrU 10048995 chrU 5467251..5467362 217..328 455 93.8 Plus
chrX 22417052 chrX 8977777..8977972 16..211 440 81.6 Plus
chrX 22417052 chrX 8978004..8978127 216..339 380 87.1 Plus
chrX 22417052 chrX 8980218..8980407 19..211 225 75.6 Plus
chrX 22417052 chrX 8978991..8979180 19..211 210 75.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13790334..13790707 712..339 1870 100 Minus
X 23542271 X 13790766..13791104 339..1 1695 100 Minus
X 23542271 X 22242007..22242370 341..704 1325 90.9 Plus
X 23542271 X 22158322..22158685 341..704 1325 90.9 Plus
X 23542271 X 22163358..22163721 341..704 1325 90.9 Plus
X 23542271 X 22153277..22153640 341..704 1310 90.7 Plus
X 23542271 X 22168090..22168453 341..704 1310 90.7 Plus
X 23542271 X 22173076..22173439 341..704 1310 90.7 Plus
X 23542271 X 22177940..22178303 341..704 1310 90.7 Plus
X 23542271 X 22182928..22183291 341..704 1310 90.7 Plus
X 23542271 X 22187805..22188168 341..704 1310 90.7 Plus
X 23542271 X 22192708..22193071 341..704 1310 90.7 Plus
X 23542271 X 22202618..22202981 341..704 1310 90.7 Plus
X 23542271 X 22212763..22213126 341..704 1310 90.7 Plus
X 23542271 X 22217814..22218177 341..704 1310 90.7 Plus
X 23542271 X 22227008..22227371 341..704 1310 90.7 Plus
X 23542271 X 22232005..22232368 341..704 1310 90.7 Plus
X 23542271 X 22237000..22237363 341..704 1310 90.7 Plus
X 23542271 X 22247035..22247398 341..704 1310 90.7 Plus
X 23542271 X 22252017..22252380 341..704 1310 90.7 Plus
X 23542271 X 22143493..22143856 341..704 1295 90.4 Plus
X 23542271 X 22148224..22148587 341..704 1295 90.4 Plus
X 23542271 X 22197609..22197972 341..704 1295 90.4 Plus
X 23542271 X 22217395..22217597 4..218 605 86.5 Plus
X 23542271 X 22147807..22148007 6..218 595 86.4 Plus
X 23542271 X 22152860..22153060 6..218 595 86.4 Plus
X 23542271 X 22143076..22143276 6..218 595 86.4 Plus
X 23542271 X 22157905..22158105 6..218 595 86.4 Plus
X 23542271 X 22162941..22163141 6..218 595 86.4 Plus
X 23542271 X 22167673..22167873 6..218 595 86.4 Plus
X 23542271 X 22192291..22192491 6..218 595 86.4 Plus
X 23542271 X 22197192..22197392 6..218 595 86.4 Plus
X 23542271 X 22202201..22202401 6..218 595 86.4 Plus
X 23542271 X 22212346..22212546 6..218 595 86.4 Plus
X 23542271 X 22226591..22226791 6..218 595 86.4 Plus
X 23542271 X 22231588..22231788 6..218 595 86.4 Plus
X 23542271 X 22236583..22236783 6..218 595 86.4 Plus
X 23542271 X 22241590..22241790 6..218 595 86.4 Plus
X 23542271 X 22246618..22246818 6..218 595 86.4 Plus
X 23542271 X 22251600..22251800 6..218 595 86.4 Plus
X 23542271 X 22182511..22182711 6..218 580 85.9 Plus
X 23542271 X 22172659..22172859 6..218 565 85.4 Plus
X 23542271 X 22177523..22177723 6..218 565 85.4 Plus
X 23542271 X 22187388..22187588 6..218 565 85.4 Plus
X 23542271 X 9086423..9086611 341..529 525 85.2 Plus
X 23542271 X 22167899..22168010 217..328 470 94.6 Plus
X 23542271 X 22143302..22143413 217..328 470 94.6 Plus
X 23542271 X 22148033..22148144 217..328 470 94.6 Plus
X 23542271 X 22158131..22158242 217..328 470 94.6 Plus
X 23542271 X 22163167..22163278 217..328 470 94.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13798432..13798805 712..339 1870 100 Minus
X 23527363 X 13798864..13799202 339..1 1695 100 Minus
X 23527363 X 22148450..22148813 341..704 1325 90.9 Plus
X 23527363 X 22143414..22143777 341..704 1325 90.9 Plus
X 23527363 X 22227099..22227462 341..704 1325 90.9 Plus
X 23527363 X 22212100..22212463 341..704 1310 90.6 Plus
X 23527363 X 22202906..22203269 341..704 1310 90.6 Plus
X 23527363 X 22187710..22188073 341..704 1310 90.6 Plus
X 23527363 X 22177800..22178163 341..704 1310 90.6 Plus
X 23527363 X 22172897..22173260 341..704 1310 90.6 Plus
X 23527363 X 22168020..22168383 341..704 1310 90.6 Plus
X 23527363 X 22163032..22163395 341..704 1310 90.6 Plus
X 23527363 X 22158168..22158531 341..704 1310 90.6 Plus
X 23527363 X 22153182..22153545 341..704 1310 90.6 Plus
X 23527363 X 22138369..22138732 341..704 1310 90.6 Plus
X 23527363 X 22222092..22222455 341..704 1310 90.6 Plus
X 23527363 X 22217097..22217460 341..704 1310 90.6 Plus
X 23527363 X 22197855..22198218 341..704 1310 90.6 Plus
X 23527363 X 22237109..22237472 341..704 1310 90.6 Plus
X 23527363 X 22232127..22232490 341..704 1310 90.6 Plus
X 23527363 X 22182701..22183064 341..704 1295 90.3 Plus
X 23527363 X 22133316..22133679 341..704 1295 90.3 Plus
X 23527363 X 22128585..22128948 341..704 1295 90.3 Plus
X 23527363 X 9094521..9094709 341..529 525 85.1 Plus
X 23527363 X 22177609..22177720 217..328 470 94.6 Plus
X 23527363 X 22172706..22172817 217..328 470 94.6 Plus
X 23527363 X 22162841..22162952 217..328 470 94.6 Plus
X 23527363 X 22148259..22148370 217..328 470 94.6 Plus
X 23527363 X 22143223..22143334 217..328 470 94.6 Plus
X 23527363 X 22202715..22202826 217..328 470 94.6 Plus
X 23527363 X 22152991..22153102 217..328 470 94.6 Plus
X 23527363 X 22133125..22133236 217..328 470 94.6 Plus
X 23527363 X 22128394..22128505 217..328 470 94.6 Plus
X 23527363 X 22216906..22217017 217..328 455 93.7 Plus
X 23527363 X 22211909..22212020 217..328 455 93.7 Plus
X 23527363 X 22197664..22197775 217..328 455 93.7 Plus
X 23527363 X 22187519..22187630 217..328 455 93.7 Plus
X 23527363 X 22182510..22182621 217..328 455 93.7 Plus
X 23527363 X 22157977..22158088 217..328 455 93.7 Plus
X 23527363 X 22167829..22167940 217..328 455 93.7 Plus
X 23527363 X 22202487..22202583 4..100 440 96.9 Plus
X 23527363 X 22226908..22227019 217..328 440 92.8 Plus
X 23527363 X 22138178..22138289 217..328 440 92.8 Plus
X 23527363 X 22236918..22237029 217..328 440 92.8 Plus
X 23527363 X 22231936..22232047 217..328 440 92.8 Plus
X 23527363 X 22221901..22222012 217..328 440 92.8 Plus
X 23527363 X 22132899..22132993 6..100 430 96.8 Plus
X 23527363 X 22137952..22138046 6..100 430 96.8 Plus
X 23527363 X 22148033..22148127 6..100 430 96.8 Plus
X 23527363 X 22142997..22143091 6..100 430 96.8 Plus
X 23527363 X 22128168..22128262 6..100 430 96.8 Plus
Blast to na_te.dros performed on 2019-03-15 12:48:11 has no hits.

GH23064.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:49:20 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13681067..13681436 339..708 100 <- Minus
chrX 13681496..13681833 1..338 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:53:24 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..633 32..664 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:52:41 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..633 32..664 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:49:59 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..633 32..664 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:35:05 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..633 32..664 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:09:52 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..633 32..664 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:04:35 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..708 1..708 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:52:41 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..708 1..708 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:49:59 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 8..715 1..708 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:35:06 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 1..708 1..708 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:09:52 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
CG10993-RA 8..715 1..708 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:20 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
X 13790338..13790707 339..708 100 <- Minus
X 13790767..13791104 1..338 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:20 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
X 13790338..13790707 339..708 100 <- Minus
X 13790767..13791104 1..338 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:49:20 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
X 13790338..13790707 339..708 100 <- Minus
X 13790767..13791104 1..338 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:49:59 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13684371..13684740 339..708 100 <- Minus
arm_X 13684800..13685137 1..338 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:17:11 Download gff for GH23064.complete
Subject Subject Range Query Range Percent Splice Strand
X 13798436..13798805 339..708 100 <- Minus
X 13798865..13799202 1..338 100   Minus

GH23064.pep Sequence

Translation from 31 to 663

> GH23064.pep
MKEIKKKSKPKRKPTRMEVEESEPEMPFSYKTQPDEGESVNGEAHTSDDG
DEMELATFKAASKKGVIYISNLPKHMTLTRLREILGEYGAIGRAFLRSQK
LSRKPHNFLFAEGWVEFKSKRVAKQIVPLLNYKQISTHKKSPFYYSLWIM
EYLPRFKWARLNELMNIVPVTNSQNHLKFLNKKAKKAKKVKKAKKALADR
LLELVLASSI*

GH23064.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19191-PA 201 GF19191-PA 10..150 42..166 417 58.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18285-PA 216 GG18285-PA 1..160 17..166 468 59.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24320-PA 224 GH24320-PA 36..213 47..186 356 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10993-PA 210 CG10993-PA 1..210 1..210 1078 100 Plus
CG40813-PB 213 CG40813-PB 1..213 1..210 787 75.3 Plus
CG41562-PA 213 CG41562-PA 1..213 1..210 784 74.9 Plus
CG32708-PA 239 CG32708-PA 1..236 1..199 582 55.5 Plus
CG32706-PA 230 CG32706-PA 1..208 17..196 276 37.3 Plus
CG6999-PA 233 CG6999-PA 1..217 17..204 272 36.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14800-PA 233 GI14800-PA 51..181 53..166 387 60.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26836-PA 208 GL26836-PA 28..156 55..166 396 62 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17094-PA 208 GA17094-PA 28..156 55..166 398 62 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17585-PA 380 GM17585-PA 3..171 8..167 487 62.7 Plus
Dsec\GM17585-PA 380 GM17585-PA 234..373 36..166 437 62.9 Plus
Dsec\GM13714-PA 145 GM13714-PA 13..144 29..143 391 62.1 Plus
Dsec\GM17586-PA 116 GM17586-PA 21..115 62..156 331 63.2 Plus
Dsec\GM13716-PA 182 GM13716-PA 5..155 3..165 286 43.9 Plus
Dsec\GM18808-PA 182 GM18808-PA 5..155 3..165 286 43.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15873-PA 347 GD15873-PA 3..173 8..167 471 58.5 Plus
Dsim\GD15873-PA 347 GD15873-PA 198..340 33..166 471 63.6 Plus
Dsim\GD16928-PA 353 GD16928-PA 29..173 29..156 448 64.8 Plus
Dsim\GD16928-PA 353 GD16928-PA 176..315 13..165 249 40.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19466-PA 218 GJ19466-PA 36..166 55..166 377 60.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25388-PA 233 GK25388-PA 73..183 63..166 368 64.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15817-PA 234 GE15817-PA 17..178 17..166 474 60.5 Plus

GH23064.hyp Sequence

Translation from 31 to 663

> GH23064.hyp
MKEIKKKSKPKRKPTRMEVEESEPEMPFSYKTQPDEGESVNGEAHTSDDG
DEMELATFKAASKKGVIYISNLPKHMTLTRLREILGEYGAIGRAFLRSQK
LSRKPHNFLFAEGWVEFKSKRVAKQIVPLLNYKQISTHKKSPFYYSLWIM
EYLPRFKWARLNELMNIVPVTNSQNHLKFLNKKAKKAKKVKKAKKALADR
LLELVLASSI*

GH23064.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10993-PA 210 CG10993-PA 1..210 1..210 1078 100 Plus
CG40813-PB 213 CG40813-PB 1..213 1..210 787 75.3 Plus
CG41562-PA 213 CG41562-PA 1..213 1..210 784 74.9 Plus
CG32708-PA 239 CG32708-PA 1..236 1..199 582 55.5 Plus
CG32706-PA 230 CG32706-PA 1..208 17..196 276 37.3 Plus