Clone GH23156 Report

Search the DGRC for GH23156

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:231
Well:56
Vector:pOT2
Associated Gene/TranscriptCG10566-RA
Protein status:GH23156.pep: gold
Preliminary Size:1844
Sequenced Size:1755

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10566 2001-01-01 Release 2 assignment
CG10566 2001-07-04 Blastp of sequenced clone
CG10566 2003-01-01 Sim4 clustering to Release 3
CG10566 2008-04-29 Release 5.5 accounting
CG10566 2008-08-15 Release 5.9 accounting
CG10566 2008-12-18 5.12 accounting

Clone Sequence Records

GH23156.complete Sequence

1755 bp (1755 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051584

> GH23156.complete
ACACTTCGCTCTAATGTAATTTTAGTTATTTATTCCTTACAAATGAGCAC
GTATTTAAGGGATTTCATAAATTATGGAAAATATTTGGATCAAATGTTAT
TTGGCAATTTCTACTAAATACCATGACTTAACTTAGATCCCTTAAATACC
ACCCGAATAAAGGACTTTAGTGTGACCCTATACAAACGGGGCGCTTGACA
GTGCTGCAAAGTGACGATTGCAATCGAAAGGCGATAAGCATTGGAAAATA
ACGATACAGCGCCACCCCACCACCCAACCACCCTCCTAAACAACCACTCA
GTGGTGAAAAATCACCCGTAGCTGAAAACTGGAACGGAAAACGGCGAAAA
TATGCTCAAGTCGGAGGTTCAGCACCAGTTCTGGATTACCAAAAAGGTGG
TGCAGCGCAAGCTCGGAACGAAGGAGGACAAGCACATAATATCCTCGGAC
GCGGAGCTGGATTCCAAGATCGAGGTGTTCAAATCGATATCGGACACCAG
CTTGAACCTGTGCAAAATCATTGACCAATACCAGGAGCGCCTATGCATCC
TGTCGCAGGAGGAGTGTGTGTTCGGCAGGTTCCTCAAGGAGGCGGGAAAG
CGGAGCAGAACCACGGGCGGTAGTATCGCCCACACGGCCAAGGCCGTATC
CTTCGCTGGACAACAGAGGATGTGCGTGCGGGTGCCGCTCCTGCGGCTCC
AGCACGAAGTCGATGTGTTCCGCTGCCGGGCGATAAAGGACACGGAGCAG
ACCCTCCAGACGATGGAGAAGGAGCGCACGGAATACCGCGCCGCTCTCTC
CTGGATGAAGTCCGCCAGCCAGGAACTGGATCCCGATACGGGCAAGGGTC
TGGACAAGTTTCGCACGGCACAGGCCCACGTGCGGGTGGCCAAGCATAAT
TTCGATGGTTACTCAATGGATTCCATTCAGAAGATTGATTTACTAGCAGC
TGCCCGATGCAACATGTACTCCCATGCTCTGGTGGCCTACGTTACCGAGT
TGAAGAACTTTGCCCAGAAGGCCGCCTCCACATTCCAGACCATATCTAAG
GCCTTGATTATAAAGCCCAAGTACGACTTCTGTGTGCTAAAGGAACTGTC
TCAAAATGAAGGATCCACAGAGGAAGTGCCGCCAATCGAAGCCGTGGATA
AGGACCAGTCGTTATTCTTTGCTAACGAGTACCAGGACAAGCTGGAAACC
CAGCCGGAAATCAAGGAGTCCGAAGAGGACAAACCAAGTGCACCTCCCAA
TGCCTGCGGCGACAATGAATCCTTGCTTATTGAGCTTTCCAAGCAGCTGG
AGGACAGTCCTCTAATAGATGCGCCGCTGGATGAAGATATACCTGCCCAA
AATAGCACTAACAAGCTATGGTCCCGCTTGTTTAGCCAGCAGAATCAGCA
ACCCATACCGAGCCAAGTAGCCACGGACTCGAAGGCAAGTGCAGGTGGCG
CCACCCCGGTTCCCAGCAAATCGCAGACCACCAACAATCCCTGGCTGGAT
CTTTTCGCCGACTTGGATCCCTTAGCCAATCCGCAAGCCTTCGATTTAAA
ACTGAGCGGCGGACGCAGTGTGGCCGAGCAGACCTGAGCAGATTACCCTC
CCGCACAGATTATATTTGTTGATCTGCATATACCGTTGGAAACTAGCTAG
TCAAAATGGAGAATCTTTGGATGTAACTTTTCGCTAAACGTTCAAAAACT
TTTTATGTTTTATTTAAATAAAATTTATATGGGACAAAAAAAAAAAAAAA
AAAAA

GH23156.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-RA 1737 CG10566-RA 1..1736 1..1736 8680 100 Plus
CG10565-RA 2562 CG10565-RA 2449..2562 1736..1623 570 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21120455..21121387 1..933 4665 100 Plus
chr3L 24539361 chr3L 21121758..21122319 1174..1735 2795 99.8 Plus
chr3L 24539361 chr3L 21121455..21121696 932..1173 1210 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21131446..21132378 1..933 4665 100 Plus
3L 28110227 3L 21132749..21133311 1174..1736 2815 100 Plus
3L 28110227 3L 21132446..21132687 932..1173 1210 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21124546..21125478 1..933 4665 100 Plus
3L 28103327 3L 21125849..21126411 1174..1736 2815 100 Plus
3L 28103327 3L 21125546..21125787 932..1173 1210 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:14:53 has no hits.

GH23156.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:15:46 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21120455..21121387 1..933 100 -> Plus
chr3L 21121457..21121696 934..1173 100 -> Plus
chr3L 21121758..21122283 1174..1699 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:53:29 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1236 352..1587 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:25 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1236 352..1587 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:22:57 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1236 352..1587 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:17 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1236 352..1587 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:32:56 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1236 352..1587 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:28 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:24 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:57 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:17 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1735 1..1735 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:32:56 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
CG10566-RA 1..1735 1..1735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:46 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21131446..21132378 1..933 100 -> Plus
3L 21132448..21132687 934..1173 100 -> Plus
3L 21132749..21133310 1174..1735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:46 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21131446..21132378 1..933 100 -> Plus
3L 21132448..21132687 934..1173 100 -> Plus
3L 21132749..21133310 1174..1735 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:15:46 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21131446..21132378 1..933 100 -> Plus
3L 21132448..21132687 934..1173 100 -> Plus
3L 21132749..21133310 1174..1735 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:57 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21124546..21125478 1..933 100 -> Plus
arm_3L 21125548..21125787 934..1173 100 -> Plus
arm_3L 21125849..21126410 1174..1735 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:35:04 Download gff for GH23156.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21124546..21125478 1..933 100 -> Plus
3L 21125548..21125787 934..1173 100 -> Plus
3L 21125849..21126410 1174..1735 100   Plus

GH23156.pep Sequence

Translation from 351 to 1586

> GH23156.pep
MLKSEVQHQFWITKKVVQRKLGTKEDKHIISSDAELDSKIEVFKSISDTS
LNLCKIIDQYQERLCILSQEECVFGRFLKEAGKRSRTTGGSIAHTAKAVS
FAGQQRMCVRVPLLRLQHEVDVFRCRAIKDTEQTLQTMEKERTEYRAALS
WMKSASQELDPDTGKGLDKFRTAQAHVRVAKHNFDGYSMDSIQKIDLLAA
ARCNMYSHALVAYVTELKNFAQKAASTFQTISKALIIKPKYDFCVLKELS
QNEGSTEEVPPIEAVDKDQSLFFANEYQDKLETQPEIKESEEDKPSAPPN
ACGDNESLLIELSKQLEDSPLIDAPLDEDIPAQNSTNKLWSRLFSQQNQQ
PIPSQVATDSKASAGGATPVPSKSQTTNNPWLDLFADLDPLANPQAFDLK
LSGGRSVAEQT*

GH23156.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24295-PA 417 GF24295-PA 1..417 1..411 1824 85 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16160-PA 411 GG16160-PA 1..411 1..411 2118 95.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14567-PA 421 GH14567-PA 1..421 1..411 1627 76.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
ICA69-PB 411 CG10566-PB 1..411 1..411 2105 100 Plus
ICA69-PA 411 CG10566-PA 1..411 1..411 2105 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13894-PA 420 GI13894-PA 1..420 1..411 1672 77.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20778-PA 369 GL20778-PA 1..369 1..411 858 52.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10400-PA 432 GA10400-PA 1..432 1..411 1654 76.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22342-PA 411 GM22342-PA 1..411 1..411 2151 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14935-PA 411 GD14935-PA 1..411 1..411 2153 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11749-PA 414 GJ11749-PA 1..414 1..411 1683 79.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12319-PA 439 GK12319-PA 1..439 1..411 1614 74.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23256-PA 411 GE23256-PA 1..411 1..411 2155 97.3 Plus
Dyak\GE19729-PA 411 GE19729-PA 1..411 1..411 2144 96.8 Plus

GH23156.hyp Sequence

Translation from 351 to 1586

> GH23156.hyp
MLKSEVQHQFWITKKVVQRKLGTKEDKHIISSDAELDSKIEVFKSISDTS
LNLCKIIDQYQERLCILSQEECVFGRFLKEAGKRSRTTGGSIAHTAKAVS
FAGQQRMCVRVPLLRLQHEVDVFRCRAIKDTEQTLQTMEKERTEYRAALS
WMKSASQELDPDTGKGLDKFRTAQAHVRVAKHNFDGYSMDSIQKIDLLAA
ARCNMYSHALVAYVTELKNFAQKAASTFQTISKALIIKPKYDFCVLKELS
QNEGSTEEVPPIEAVDKDQSLFFANEYQDKLETQPEIKESEEDKPSAPPN
ACGDNESLLIELSKQLEDSPLIDAPLDEDIPAQNSTNKLWSRLFSQQNQQ
PIPSQVATDSKASAGGATPVPSKSQTTNNPWLDLFADLDPLANPQAFDLK
LSGGRSVAEQT*

GH23156.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10566-PB 411 CG10566-PB 1..411 1..411 2105 100 Plus
CG10566-PA 411 CG10566-PA 1..411 1..411 2105 100 Plus