Clone GH23190 Report

Search the DGRC for GH23190

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:231
Well:90
Vector:pOT2
Associated Gene/TranscriptCG1275-RC
Protein status:GH23190.pep: gold
Sequenced Size:1265

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1275 2002-12-13 Blastp of sequenced clone
CG1275 2008-04-29 Release 5.5 accounting
CG1275 2008-08-15 Release 5.9 accounting
CG1275 2008-12-18 5.12 accounting

Clone Sequence Records

GH23190.complete Sequence

1265 bp (1265 high quality bases) assembled on 2002-12-13

GenBank Submission: BT003297

> GH23190.complete
AGCCACGAAAATCAGAAGTAATCGCGAAAAACCCATCGTCATCGCTTTAA
AGTCACTAATTGCTGCTAAAGATAAGAGCAGGCGGTATTGAAACAGGCAT
TATCTGAGCAGAGTGAAGCATCAATCAAGTATACGCCATGTTGTTCTCAC
TGGGCAGCGGCAAGGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTG
CTCTATGTGCTCACCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGC
CACCTGGATTGGCCAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCG
GCGTGGAGTTCAACTGGCATCCGCTGTTCATGACCATTGGCTTCATTTAC
CTGTATGGCAACTCCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAA
GAAGACTCTGAAGCTTACCCACGCCGGCATCCACATGGGTGCATTCATTC
TGACGGTGATTGCCCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAAT
CCGCCCATTCCCAACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGC
GGTGATCGTCTTCTCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGG
CGCCGGGGTTGAGGGAGAACTACAGGATCGCCATGATGCCGCTGCACATC
TACTTCGGACTCTTTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGG
CATAACCGAGAAGGCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTC
TTCCACCGGCTGGTGTGTTGGCCAATGTGATTGGAGTAATGTACGTGGTC
TTCGGGGCGCTGGTTGTCTACCTAGCCACTGAGCCCTCCTACAAGCGGAA
GCCCATTCCCGAGGACACGGCTCTGCTGAACTCCAGTTCTGTCAACGAGT
AAGGGCTATGCCCATGCCCCAAATCAACTGCAATGCTTACTTAAGCTAAA
AACTGTGCACAAAACCAAACGAAACCGAACCTGATCACACGGATGGTGCT
TTCTTAGTGATGGAGATGGAGATTCGTCAAGATGAGTGTATTATCTGTAG
CATGTACATAACCTAACGACTATGTATGACTCTGAATTATGAACATACGT
ATACTTTGGTCACCAGTTGTGCAATGATTTCAGCGAGTGCTCAAATCATA
ACGTATTTAACCTCAAGAAAAACATTTGCTTTGAACTGTACGAATACATC
TATATATGTGTGTTATATATGCTTAAATAAATATATATATATATATAAAA
AAAAAAAAAAAAAAA

GH23190.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:28:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RC 1327 CG1275-RC 65..1311 1..1247 6235 100 Plus
CG1275-RB 1779 CG1275-RB 677..1771 153..1247 5475 100 Plus
CG1275-RA 1583 CG1275-RA 473..1567 153..1247 5475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2252152..2252670 1246..728 2565 99.6 Minus
chr3L 24539361 chr3L 2252728..2253091 727..364 1790 99.5 Minus
chr3L 24539361 chr3L 2253176..2253386 363..153 1025 99.1 Minus
chr3L 24539361 chr3L 2256007..2256160 154..1 755 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2252752..2253271 1247..728 2600 100 Minus
3L 28110227 3L 2253329..2253692 727..364 1820 100 Minus
3L 28110227 3L 2253777..2253987 363..153 1055 100 Minus
3L 28110227 3L 2256605..2256758 154..1 770 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2252752..2253271 1247..728 2600 100 Minus
3L 28103327 3L 2253329..2253692 727..364 1820 100 Minus
3L 28103327 3L 2253777..2253987 363..153 1055 100 Minus
3L 28103327 3L 2256605..2256758 154..1 770 100 Minus
Blast to na_te.dros performed on 2019-03-16 05:59:35 has no hits.

GH23190.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:00:50 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2252205..2252670 728..1193 99 <- Minus
chr3L 2252728..2253091 364..727 99 <- Minus
chr3L 2253176..2253385 154..363 99 <- Minus
chr3L 2256008..2256160 1..153 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:53:32 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..765 138..902 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:59:19 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..765 138..902 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:43:39 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..765 138..902 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:49:57 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..765 138..902 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:10:26 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..765 138..902 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:16:08 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..1237 1..1237 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:59:19 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..1246 1..1246 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:43:39 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 55..1300 1..1246 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:49:57 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 1..1237 1..1237 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:10:26 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RC 55..1300 1..1246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:00:50 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252753..2253271 728..1246 100 <- Minus
3L 2253329..2253692 364..727 100 <- Minus
3L 2253777..2253986 154..363 100 <- Minus
3L 2256606..2256758 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:00:50 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252753..2253271 728..1246 100 <- Minus
3L 2253329..2253692 364..727 100 <- Minus
3L 2253777..2253986 154..363 100 <- Minus
3L 2256606..2256758 1..153 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:00:50 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252753..2253271 728..1246 100 <- Minus
3L 2253329..2253692 364..727 100 <- Minus
3L 2253777..2253986 154..363 100 <- Minus
3L 2256606..2256758 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:43:39 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253329..2253692 364..727 100 <- Minus
arm_3L 2252753..2253271 728..1246 100 <- Minus
arm_3L 2253777..2253986 154..363 100 <- Minus
arm_3L 2256606..2256758 1..153 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:21:36 Download gff for GH23190.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2252753..2253271 728..1246 100 <- Minus
3L 2253329..2253692 364..727 100 <- Minus
3L 2253777..2253986 154..363 100 <- Minus
3L 2256606..2256758 1..153 100   Minus

GH23190.pep Sequence

Translation from 137 to 901

> GH23190.pep
MLFSLGSGKANMDPALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAG
TSNPGVEFNWHPLFMTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHM
GAFILTVIALKTVFDSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGF
VAFLAPGLRENYRIAMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTP
AYSTLPPAGVLANVIGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSS
SVNE*

GH23190.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24874-PA 336 GF24874-PA 88..336 6..254 1210 91.6 Plus
Dana\GF11463-PA 290 GF11463-PA 79..271 40..228 280 36.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14525-PA 254 GG14525-PA 1..254 1..254 1296 98 Plus
Dere\GG22561-PA 290 GG22561-PA 79..271 40..228 266 36.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16482-PA 342 GH16482-PA 97..342 7..254 1099 82.3 Plus
Dgri\GH19961-PA 287 GH19961-PA 54..268 18..228 292 35 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PC 254 CG1275-PC 1..254 1..254 1307 100 Plus
CG1275-PA 340 CG1275-PA 92..340 6..254 1284 100 Plus
CG1275-PB 340 CG1275-PB 92..340 6..254 1284 100 Plus
CG1275-PD 243 CG1275-PD 1..243 12..254 1253 100 Plus
nemy-PL 256 CG8776-PL 25..237 19..228 281 33.6 Plus
nemy-PK 266 CG8776-PK 35..247 19..228 281 33.6 Plus
nemy-PB 267 CG8776-PB 35..248 19..228 281 33.3 Plus
nemy-PG 267 CG8776-PG 35..248 19..228 281 33.3 Plus
nemy-PE 267 CG8776-PE 35..248 19..228 281 33.3 Plus
nemy-PA 290 CG8776-PA 58..271 19..228 281 33.3 Plus
nemy-PM 209 CG8776-PM 6..190 47..228 261 36.4 Plus
nemy-PC 210 CG8776-PC 6..191 47..228 261 36.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12153-PA 336 GI12153-PA 89..333 4..250 1140 85.8 Plus
Dmoj\GI19919-PA 286 GI19919-PA 53..267 18..228 299 35.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24623-PA 332 GL24623-PA 99..324 4..229 1076 88.9 Plus
Dper\GL17735-PA 291 GL17735-PA 80..234 40..192 266 40.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11787-PA 349 GA11787-PA 99..349 4..254 1196 88.4 Plus
Dpse\GA21312-PA 291 GA21312-PA 80..234 40..192 268 40.8 Plus
Dpse\GA21312-PB 267 GA21312-PB 56..210 40..192 267 40.8 Plus
Dpse\GA21312-PC 210 GA21312-PC 5..153 46..192 262 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14130-PA 254 GM14130-PA 1..254 1..254 1302 98.4 Plus
Dsec\GM20344-PA 290 GM20344-PA 79..271 40..228 266 35.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13402-PA 340 GD13402-PA 99..340 13..254 1265 98.8 Plus
Dsim\GD13398-PA 243 GD13398-PA 1..243 12..254 1247 98.4 Plus
Dsim\GD25823-PA 290 GD25823-PA 79..271 40..228 266 35.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13433-PA 338 GJ13433-PA 92..338 6..254 1098 82.3 Plus
Dvir\GJ15086-PA 287 GJ15086-PA 54..268 18..228 296 36.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12595-PA 355 GK12595-PA 108..355 6..254 1152 87.2 Plus
Dwil\GK21609-PA 289 GK21609-PA 78..232 40..192 262 39.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21717-PA 254 GE21717-PA 1..254 1..254 1296 97.6 Plus
Dyak\GE13431-PA 290 GE13431-PA 79..271 40..228 268 36.9 Plus

GH23190.hyp Sequence

Translation from 137 to 901

> GH23190.hyp
MLFSLGSGKANMDPALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAG
TSNPGVEFNWHPLFMTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHM
GAFILTVIALKTVFDSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGF
VAFLAPGLRENYRIAMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTP
AYSTLPPAGVLANVIGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSS
SVNE*

GH23190.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PC 254 CG1275-PC 1..254 1..254 1307 100 Plus
CG1275-PA 340 CG1275-PA 92..340 6..254 1284 100 Plus
CG1275-PB 340 CG1275-PB 92..340 6..254 1284 100 Plus
CG1275-PD 243 CG1275-PD 1..243 12..254 1253 100 Plus
nemy-PL 256 CG8776-PL 25..237 19..228 281 33.6 Plus