Clone GH23305 Report

Search the DGRC for GH23305

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:233
Well:5
Vector:pOT2
Associated Gene/TranscriptMf-RC
Protein status:GH23305.pep: gold
Sequenced Size:812

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6803 2002-11-11 Blastp of sequenced clone
Zeelin1 2008-04-29 Release 5.5 accounting
Mf 2008-08-15 Release 5.9 accounting
Mf 2008-12-18 5.12 accounting

Clone Sequence Records

GH23305.complete Sequence

812 bp (812 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001435

> GH23305.complete
TAGATCGCTATTTTTTAGGAGTAAATTTAAATTCGAACGAGTTCAACGAT
TTTTTCGTGAACAGAACAAAACAAATCGATCAAAATGTTCAAAAACCACT
TGGAAATGATTGGGCGCAATGAGAGCCCCAGCAAGAAGGCGAAATTCTGG
CAGTCCTACATCAGGTCCCTGAAGGGCTCCGAGGATATCCGTGCCCACGA
GGCGCCCCGTGCCTCTCGTCCCTACAGCTCCTACCTGGACTCGCCCTCCT
ACAGGAGCATCTATGACGAGCCCGCCACCGCCAATGAGCGCGTCCAGTCC
TCTGGCTACAGATATCTGCCAGTGAGCCGCGACACCTACGGCTACTCGCC
CCGTGCCATCTACGATCATCACTACAGCCGAACAATTCCAGCTAACTACG
ACGCAGAGAAGGCCTGGAATGATCATCTGAAGCGCATGCAGGAGATCGAG
CGCAGGTACCCATCTCGCTATGGTCTCTACTTGAGGGACAAGCCACTCAC
GCCCAACTCGCTGGTGCCCCTGGAGTACGAGCCAGAGGACAAGCTGCTGG
CTGAGCTCAACAAGGGTAAGGATATCAAAGACATTTTCTAAATCCAATGC
CAGACACAAAAGTCCGACACCAACATCAGCAGGAAAGTAAACAACACAAC
AACATCAACAACGAAAATTTTAAAATTAATATATTTATACGAAATGTAAG
CACGAACTCAAAAAAAAAAAAAAATAGCAAATGAAATCTGATCGCAACAT
CCAAAAACGAACTCAACGAAATTTTTTTCAAATTCAGCCAACACAAAAAA
AAAAAAAAAAAA

GH23305.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mf.g 1657 Mf.g 31..837 1..807 4035 100 Plus
Mf.c 1109 Mf.c 31..837 1..807 4035 100 Plus
Mf.d 2060 Mf.d 434..1240 1..807 4035 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11000584..11000924 794..454 1705 100 Minus
chr3R 27901430 chr3R 11002908..11003118 385..175 1055 100 Minus
chr3R 27901430 chr3R 11003666..11003808 176..34 700 99.3 Minus
chr3R 27901430 chr3R 11000991..11001066 457..382 365 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15175942..15176295 807..454 1770 100 Minus
3R 32079331 3R 15178280..15178490 385..175 1055 100 Minus
3R 32079331 3R 15179038..15179180 176..34 715 100 Minus
3R 32079331 3R 15176362..15176437 457..382 365 98.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14916773..14917126 807..454 1770 100 Minus
3R 31820162 3R 14919111..14919321 385..175 1055 100 Minus
3R 31820162 3R 14919869..14920011 176..34 715 100 Minus
3R 31820162 3R 14917193..14917268 457..382 365 98.6 Minus
3R 31820162 3R 14921039..14921071 33..1 165 100 Minus
Blast to na_te.dros performed 2019-03-15 23:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 3682..3792 649..756 151 62.2 Plus
gypsy9 5349 gypsy9 GYPSY9 5349bp 449..580 639..771 139 59 Plus
P-element 2907 P-element PPI251 2907bp AKA(V01520,X69493) Derived from X06779 (g58305) (Rel. 49, Last updated, Version 8). 2597..2688 667..755 138 66 Plus
rover 7318 rover ROVER 7318bp 765..855 635..731 119 62.9 Plus
rover 7318 rover ROVER 7318bp 916..1006 635..731 119 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2442..2494 615..666 109 69.8 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 733..834 355..454 108 60.2 Plus

GH23305.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:53:53 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11000584..11000922 456..794 92 <- Minus
chr3R 11000993..11001062 386..455 100 <- Minus
chr3R 11002908..11003117 176..385 100 <- Minus
chr3R 11003667..11003808 34..175 99 <- Minus
chr3R 11004836..11004868 1..33 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:53:41 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 1..507 85..591 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:06:05 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 1..507 85..591 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:46:03 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 1..507 85..591 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:56 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 1..507 85..591 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:51:03 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 1..507 85..591 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:25:35 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 31..712 1..682 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:06:05 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 31..824 1..794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:46:03 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 31..824 1..794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:56 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 31..712 1..682 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:51:03 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
Mf-RC 31..824 1..794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:53 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15175955..15176293 456..794 100 <- Minus
3R 15176364..15176433 386..455 100 <- Minus
3R 15178280..15178489 176..385 100 <- Minus
3R 15179039..15179180 34..175 100 <- Minus
3R 15180208..15180240 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:53 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15175955..15176293 456..794 100 <- Minus
3R 15176364..15176433 386..455 100 <- Minus
3R 15178280..15178489 176..385 100 <- Minus
3R 15179039..15179180 34..175 100 <- Minus
3R 15180208..15180240 1..33 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:53:53 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15175955..15176293 456..794 100 <- Minus
3R 15176364..15176433 386..455 100 <- Minus
3R 15178280..15178489 176..385 100 <- Minus
3R 15179039..15179180 34..175 100 <- Minus
3R 15180208..15180240 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:46:03 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11001677..11002015 456..794 100 <- Minus
arm_3R 11002086..11002155 386..455 100 <- Minus
arm_3R 11004002..11004211 176..385 100 <- Minus
arm_3R 11004761..11004902 34..175 100 <- Minus
arm_3R 11005930..11005962 1..33 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:22 Download gff for GH23305.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14916786..14917124 456..794 100 <- Minus
3R 14917195..14917264 386..455 100 <- Minus
3R 14919111..14919320 176..385 100 <- Minus
3R 14919870..14920011 34..175 100 <- Minus
3R 14921039..14921071 1..33 100   Minus

GH23305.hyp Sequence

Translation from 84 to 590

> GH23305.hyp
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKGKDIKDIF*

GH23305.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PQ 168 CG6803-PQ 1..168 1..168 898 100 Plus
Mf-PC 168 CG6803-PC 1..168 1..168 898 100 Plus
Mf-PI 230 CG6803-PI 1..162 1..162 858 98.8 Plus
Mf-PH 236 CG6803-PH 1..162 1..162 858 98.8 Plus
Mf-PE 166 CG6803-PE 1..160 1..160 856 100 Plus

GH23305.pep Sequence

Translation from 84 to 590

> GH23305.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKGKDIKDIF*

GH23305.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17159-PA 370 GF17159-PA 1..162 1..162 816 95.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20880-PA 365 GG20880-PA 1..162 1..162 831 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14549-PA 367 GH14549-PA 1..162 1..162 824 96.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-PQ 168 CG6803-PQ 1..168 1..168 898 100 Plus
Mf-PC 168 CG6803-PC 1..168 1..168 898 100 Plus
Mf-PI 230 CG6803-PI 1..162 1..162 858 98.8 Plus
Mf-PH 236 CG6803-PH 1..162 1..162 858 98.8 Plus
Mf-PD 312 CG6803-PD 1..162 1..162 858 98.8 Plus
Mf-PJ 313 CG6803-PJ 1..162 1..162 858 98.8 Plus
Mf-PF 313 CG6803-PF 1..162 1..162 858 98.8 Plus
Mf-PM 364 CG6803-PM 1..162 1..162 858 98.8 Plus
Mf-PL 364 CG6803-PL 1..162 1..162 858 98.8 Plus
Mf-PB 365 CG6803-PB 1..162 1..162 858 98.8 Plus
Mf-PE 166 CG6803-PE 1..160 1..160 856 100 Plus
Mf-PO 310 CG6803-PO 1..160 1..162 830 96.9 Plus
Mf-PN 157 CG6803-PN 1..153 1..160 796 95 Plus
Mf-PG 157 CG6803-PG 1..153 1..160 796 95 Plus
Mf-PA 157 CG6803-PA 1..153 1..160 796 95 Plus
Mf-PP 119 CG6803-PP 1..100 1..100 534 100 Plus
Mf-PK 119 CG6803-PK 1..100 1..100 534 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23663-PA 367 GI23663-PA 1..162 1..162 837 98.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21688-PA 367 GL21688-PA 1..162 1..162 823 96.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19873-PD 168 GA19873-PD 1..168 1..168 854 96.4 Plus
Dpse\GA19873-PB 367 GA19873-PB 1..162 1..162 823 96.3 Plus
Dpse\GA19873-PC 312 GA19873-PC 1..162 1..162 822 96.3 Plus
Dpse\GA19873-PA 313 GA19873-PA 1..162 1..162 822 96.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25804-PA 367 GM25804-PA 1..162 1..162 837 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20380-PA 236 GD20380-PA 1..168 1..168 836 95.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:31:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23223-PA 363 GJ23223-PA 1..162 1..162 824 96.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13979-PA 368 GK13979-PA 1..162 1..162 820 95.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26409-PA 313 GE26409-PA 1..162 1..162 829 97.5 Plus