Clone GH23387 Report

Search the DGRC for GH23387

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:233
Well:87
Vector:pOT2
Associated Gene/TranscriptCG10341-RA
Protein status:GH23387.pep: gold
Preliminary Size:1954
Sequenced Size:1863

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10341 2001-01-01 Release 2 assignment
CG10341 2001-07-04 Blastp of sequenced clone
CG10341 2003-01-01 Sim4 clustering to Release 3
CG10341 2008-04-29 Release 5.5 accounting
CG10341 2008-08-15 Release 5.9 accounting
CG10341 2008-12-18 5.12 accounting

Clone Sequence Records

GH23387.complete Sequence

1863 bp (1863 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051589

> GH23387.complete
TGCATTCAACGTGTGTATTCTCAGTTGATATTCGTTTCCCTGCGATTTCA
GCTTGATTAAGGAATTGTCTAACTATTTAAAGTTAAATAGGCATGGAGAG
TGAGCAGCCAGCGGCTGTAAAGGCTTCAGCTCCAATTGAAGAGCCACAAT
CCACCGAAACAGCTGTTGAATTGGGGAAACATAGCACCTTGAAGGCAGAC
TTATCAATAGATAAGTTGGAAACAGCGACAACAGAAGCTACGAATGCCGT
AGTAGAACCAGTAGAAATGGAGCAGCAGGTGGAAAATGAACTGGTAAATG
AGTCAACACAAGCCATGACATCGACCACAACCCAGGAAAAGGTGGTGGGT
TCAGTGAATAATCTTGTAGAGGAGCAACAGTGTGTGGAAATGGAATTCGA
AACATCATCAGATCTCGTGGTCCAGGGAAGTCCATCGGAAGAATCCAAAA
AAGTTGCCTCTGACGCTTCTGCTACTGTGACCGCACCTCAAGTTCAGCCC
GCTCCACATGTTGATTCAAGCCCTCAAGCAAGTGGCCTCAGTCTGTTGGC
TGCCTACAGCTCTGATGACTCGGATGATGAGAAAGTCACTCCAGTGCAGA
ACGGCGACAACGATGTGATTGAAGTTCCAGTTACGGACCCCGCATCCTCC
ACCACCGCATATCGTCCAGTTGTAGCTGTGAGCTCGGATGACGAGAGCTC
AAAGAGCAGCAGCAGCAGCAGTGACTCAGACTCCGATTCCGAAGGAGAAT
ACCTCACCGTACTTCGGAAGAAGATTGACAAAAGAATCAACACCGTGGAT
TGTGACGAGGATGACGAGGACTTTGATGAAGATGGGGCTACAGGAGATCG
GTCTCGTCGTCGCCAGCCCCCGAAAGTACGAGGAGAAATGCTCCTTGATG
ACCTTCCGCCTATTCATCAGCTAGAGATTACTGTACCCGAGGATGAATGC
GTTGAACTTGGCAAAGTTCAGTCCATCGTGGATCAGCTTGTTTTGGTTTC
CGTGCTGCCGAATTCCATGCTATTCGATCTCGACACCGTTTTGTTCCTGG
AGAAGGGTCGCAAGGTCCTGGGCGAAGTGTTCGATGTGTTGGGTCAAGTG
TCGGATCCACTGTACTGCGTTCGATTCAACAGTAACAAACAGATCCTCGA
TAGGGGCATTAAAATTGGCGACGTAGTGTACTGCGCTCCCAAAACCGAAC
ACACTCAATTTGTGATCCTCTCCAAGCTGATGCAAGTTCGAGGATCGGAT
GCTTCGTGGGAGCACGATGTAGAACCACCAGCCCGCTACGTAGATCACTC
GGATGATGAAGAAGAAAGAGAAGCCAGGGCAGAGCAGCGAAAGCGCCGCC
AAAGGGATCGCACAAACTCCACAGATTCCGTGGACACGGTAACCTCGGTG
GCCACGACAGCCACTAAGGCTTCTTCAGTTGCTCCTCCTCCTCGTCAACG
CGGACGTCGTGGGCAACGAGAGAGTTTCCGCCAGAGCCAGCGACCCTCCA
TTAACCAGCACAACCAGAATCAGCCACAGGACGAACAATACAACTTCCAT
CCAAGCTACAATCCGGGCAGCTGGCACTCCAACTACTACCAGAACTATCA
CCAGGCAGCGGCTAACTTTAACATGGCTCAGCAGCATCCTGGCATGCCCT
TCCCAGTGCCTAACTATGGCTACGGAATGCCCTACGCCATGCCGCCCATG
TACCCACACATGTACCCGCCACCACCACCCTTTGCTCCTCCTCCGCCGAA
CAACCAGTCACATCAGGGTCAGCCGCCACCCAGCTAGAGATAGGTATGAC
AATTCAGTGAATTACTTTTATTATTCCAATAAAAAATCTTTATCAAAAAA
AAAAAAAAAAAAA

GH23387.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10341-RA 1878 CG10341-RA 33..1878 1..1846 9215 99.9 Plus
CG10341-RB 1823 CG10341-RB 68..1823 91..1846 8765 99.9 Plus
CG10341.a 1820 CG10341.a 68..1820 91..1846 8695 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18697777..18699389 232..1844 8050 99.9 Plus
chr2L 23010047 chr2L 18697487..18697720 1..234 1170 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18699033..18700647 232..1846 8060 99.9 Plus
2L 23513712 2L 18698743..18698976 1..234 1170 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18699033..18700647 232..1846 8060 99.9 Plus
2L 23513712 2L 18698743..18698976 1..234 1170 100 Plus
Blast to na_te.dros performed on 2019-03-16 19:21:16 has no hits.

GH23387.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:22:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18697487..18697720 1..234 100 -> Plus
chr2L 18697780..18699389 235..1844 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:53:49 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RB 62..1764 83..1787 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:17 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RB 62..1764 83..1787 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:16 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RA 1..1695 93..1787 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RB 62..1764 83..1787 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RA 1..1695 93..1787 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:18 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RA 25..1868 1..1844 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:17 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RA 25..1868 1..1844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:16 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RA 30..1873 1..1844 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RA 25..1868 1..1844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
CG10341-RA 30..1873 1..1844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18698743..18698976 1..234 100 -> Plus
2L 18699036..18700645 235..1844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18698743..18698976 1..234 100 -> Plus
2L 18699036..18700645 235..1844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:09 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18698743..18698976 1..234 100 -> Plus
2L 18699036..18700645 235..1844 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:16 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18698743..18698976 1..234 100 -> Plus
arm_2L 18699036..18700645 235..1844 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:55 Download gff for GH23387.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18698743..18698976 1..234 100 -> Plus
2L 18699036..18700645 235..1844 99   Plus

GH23387.hyp Sequence

Translation from 92 to 1786

> GH23387.hyp
MESEQPAAVKASAPIEEPQSTETAVELGKHSTLKADLSIDKLETATTEAT
NAVVEPVEMEQQVENELVNESTQAMTSTTTQEKVVGSVNNLVEEQQCVEM
EFETSSDLVVQGSPSEESKKVASDASATVTAPQVQPAPHVDSSPQASGLS
LLAAYSSDDSDDEKVTPVQNGDNDVIEVPVTDPASSTTAYRPVVAVSSDD
ESSKSSSSSSDSDSDSEGEYLTVLRKKIDKRINTVDCDEDDEDFDEDGAT
GDRSRRRQPPKVRGEMLLDDLPPIHQLEITVPEDECVELGKVQSIVDQLV
LVSVLPNSMLFDLDTVLFLEKGRKVLGEVFDVLGQVSDPLYCVRFNSNKQ
ILDRGIKIGDVVYCAPKTEHTQFVILSKLMQVRGSDASWEHDVEPPARYV
DHSDDEEEREARAEQRKRRQRDRTNSTDSVDTVTSVATTATKASSVAPPP
RQRGRRGQRESFRQSQRPSINQHNQNQPQDEQYNFHPSYNPGSWHSNYYQ
NYHQAAANFNMAQQHPGMPFPVPNYGYGMPYAMPPMYPHMYPPPPPFAPP
PPNNQSHQGQPPPS*

GH23387.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10341-PA 564 CG10341-PA 1..564 1..564 2934 100 Plus
CG10341-PC 563 CG10341-PC 1..563 1..564 2917 99.8 Plus

GH23387.pep Sequence

Translation from 92 to 1786

> GH23387.pep
MESEQPAAVKASAPIEEPQSTETAVELGKHSTLKADLSIDKLETATTEAT
NAVVEPVEMEQQVENELVNESTQAMTSTTTQEKVVGSVNNLVEEQQCVEM
EFETSSDLVVQGSPSEESKKVASDASATVTAPQVQPAPHVDSSPQASGLS
LLAAYSSDDSDDEKVTPVQNGDNDVIEVPVTDPASSTTAYRPVVAVSSDD
ESSKSSSSSSDSDSDSEGEYLTVLRKKIDKRINTVDCDEDDEDFDEDGAT
GDRSRRRQPPKVRGEMLLDDLPPIHQLEITVPEDECVELGKVQSIVDQLV
LVSVLPNSMLFDLDTVLFLEKGRKVLGEVFDVLGQVSDPLYCVRFNSNKQ
ILDRGIKIGDVVYCAPKTEHTQFVILSKLMQVRGSDASWEHDVEPPARYV
DHSDDEEEREARAEQRKRRQRDRTNSTDSVDTVTSVATTATKASSVAPPP
RQRGRRGQRESFRQSQRPSINQHNQNQPQDEQYNFHPSYNPGSWHSNYYQ
NYHQAAANFNMAQQHPGMPFPVPNYGYGMPYAMPPMYPHMYPPPPPFAPP
PPNNQSHQGQPPPS*

GH23387.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15068-PA 574 GF15068-PA 1..539 1..538 1466 65.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21127-PA 563 GG21127-PA 1..563 1..564 1969 83.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11607-PA 554 GH11607-PA 130..552 146..564 1255 63.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10341-PA 564 CG10341-PA 1..564 1..564 2934 100 Plus
CG10341-PC 563 CG10341-PC 1..563 1..564 2917 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17911-PA 650 GI17911-PA 186..635 100..542 1153 60.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19631-PA 569 GL19631-PA 2..544 18..545 1361 62.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10257-PA 578 GA10257-PA 2..553 18..545 1332 61.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17288-PA 564 GM17288-PA 1..529 1..528 2186 92.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24151-PA 567 GD24151-PA 1..567 1..564 2205 91.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17682-PA 550 GJ17682-PA 141..498 147..510 1132 70.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24689-PA 559 GK24689-PA 4..516 54..528 1196 60.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13201-PA 560 GE13201-PA 1..560 1..564 2020 84.4 Plus