Clone GH23451 Report

Search the DGRC for GH23451

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:234
Well:51
Vector:pOT2
Associated Gene/TranscriptCG3678-RA
Protein status:GH23451.pep: gold
Sequenced Size:1208

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3678 2009-10-27 Manual selection by Sue Celniker

Clone Sequence Records

GH23451.complete Sequence

1208 bp assembled on 2010-02-11

GenBank Submission: BT120319.1

> GH23451.complete
GCAGTTAAAGATTACAATTGGAAAATTAAGTTAAATTAATGAGATATTTA
AGTGCGCCTAAGTGAATATGTCGCTAGATTATGAGAAGATGAGCTGGTCG
GATGTACGCGATCAGTTCAGAACATGGCGCGAGGAGACGGGTCGCCACAG
CGAGGAGGTGGTCCAGCTGTGGGTTGCTGTGCTGGAGGACAAGGTGCACA
AGACCGGCAACGAGCGGCATCTCATCCTGGAGCAGGTGATCATCGCGGCA
TTGGATACGGCTCGCTTTGACATCGCCACCAAGTGTACCAAGCAGCTGGC
CCTCGAGTTCCCGGGCAGCCTGCGCGTGATGAAGTTCAAAGCGATGCGCT
ACGAGGCCCTGGAGCAGTACGATGAGGCCGACGAGGTCCTGGATGCAATC
ATTGCTAAGGACGAGACAAATGCCGCGCCCAGGAAGCGCAAGATTGCCAT
CCTTAAGGCCCGTGGTCGTCGCCTGGAGGCCATCAAGGAGCTCAACGAGT
ATCTGAAGAAGTTTATGTCTGACCAGGAGGCATGGCATGAGCTGTGCAAC
ATGTATCTGGCTGAAGGCGAGTTTGGCAAAGCTGCCTTCTGCATGGAGGA
GGTTTTGCTGCACAATCCGCATAGCCATCTAATACACCAGCGTTTGGCAG
AAATACGATACACAATGGGTGGCGTCGAGAATATGGAATCGGCTCGCACT
TACTATTCGCAGGCCCTGAAGCTTAATCCGCATAACTTGAGGGCCCTTTA
TGGCATTTACTTGTGCTGCAACCATTTGGACAACTCTCGTGCTGTGAGCT
CCAAACGGAAGGAGCTGCAAAAGTTGAGTCAATGGGCCCTCGAACAACTT
TTGACTAAACAAACGATTGTACCCTTGGAGGCTGCCTTTGGAAACCTGGA
AATTAAATCGAATTGACCAATATAAGCACTAATAATTTGTGCAATAGATG
CCAGAATGTAATGGTTCCAAATATTCTCAGAAGTGGGTTTCCAGTTTCTG
TTCTTTAAGCAGGTTACATAGATAAACAATTAAAGAAATAGGAGTAAAAA
CAATTTTATAGTCAGTGCATCCAAGCAACTGTTTTTGGTGGTCTAGTATT
GTTGACGGCATTGAAACCGGATAATTTAAAACATTTATTATTGAGGTAGG
CAAAAATAGTCCTGTAATAAATTTAGATTAAACGCAAAAAAAAAAAAAAA
AAAAAAAA

GH23451.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17556-RA 1341 CG17556-RA 98..1282 3..1187 5790 99.2 Plus
CG3678-RA 1077 CG3678-RA 34..1077 1..1044 5055 98.9 Plus
CG31274-RB 1496 CG31274-RB 1389..1496 1187..1080 540 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12819028..12819546 1185..667 2595 100 Minus
chr3R 27901430 chr3R 12814820..12815325 1185..667 2215 95.6 Minus
chr3R 27901430 chr3R 12815668..12816079 512..101 2060 100 Minus
chr3R 27901430 chr3R 12819889..12820300 512..101 2015 99.3 Minus
chr3R 27901430 chr3R 12815386..12815543 668..511 790 100 Minus
chr3R 27901430 chr3R 12819607..12819764 668..511 790 100 Minus
chr3R 27901430 chr3R 12816220..12816320 101..1 505 100 Minus
chr3R 27901430 chr3R 12820412..12820510 101..3 420 94.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16994540..16995060 1187..667 2605 100 Minus
3R 32079331 3R 16990332..16990839 1187..667 2210 95.4 Minus
3R 32079331 3R 16991182..16991593 512..101 2060 100 Minus
3R 32079331 3R 16995403..16995814 512..101 2000 99 Minus
3R 32079331 3R 16990900..16991057 668..511 790 100 Minus
3R 32079331 3R 16995121..16995278 668..511 790 100 Minus
3R 32079331 3R 16991734..16991834 101..1 505 100 Minus
3R 32079331 3R 16995926..16996024 101..3 420 94.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16735371..16735891 1187..667 2605 100 Minus
3R 31820162 3R 16731221..16731670 1116..667 2085 97.5 Minus
3R 31820162 3R 16732013..16732424 512..101 2060 100 Minus
3R 31820162 3R 16736234..16736645 512..101 2000 99 Minus
3R 31820162 3R 16735952..16736109 668..511 790 100 Minus
3R 31820162 3R 16731731..16731888 668..511 790 100 Minus
3R 31820162 3R 16732565..16732665 101..1 505 100 Minus
3R 31820162 3R 16736757..16736855 101..3 420 94.9 Minus
3R 31820162 3R 16731163..16731222 1187..1128 300 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:03:40 has no hits.

GH23451.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:04:15 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12819028..12819545 668..1185 100 <- Minus
chr3R 12819608..12819764 511..667 100 <- Minus
chr3R 12819891..12820299 102..510 99 <- Minus
chr3R 12820412..12820513 1..101 94   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-11 15:49:14 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 1..849 68..916 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:24:38 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 1..849 68..916 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:41:36 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 1..849 68..916 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:34:47 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 1..849 68..916 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 15:49:12 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 62..1247 1..1185 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:24:37 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 62..1247 1..1185 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:41:36 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 45..1230 1..1185 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:34:47 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
CG17556-RA 45..1230 1..1185 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:15 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16994542..16995059 668..1185 100 <- Minus
3R 16995122..16995278 511..667 100 <- Minus
3R 16995405..16995813 102..510 99 <- Minus
3R 16995926..16996027 1..101 94   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:15 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16994542..16995059 668..1185 100 <- Minus
3R 16995122..16995278 511..667 100 <- Minus
3R 16995405..16995813 102..510 99 <- Minus
3R 16995926..16996027 1..101 94   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:15 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16994542..16995059 668..1185 100 <- Minus
3R 16995122..16995278 511..667 100 <- Minus
3R 16995405..16995813 102..510 99 <- Minus
3R 16995926..16996027 1..101 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:41:36 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12820264..12820781 668..1185 100 <- Minus
arm_3R 12820844..12821000 511..667 100 <- Minus
arm_3R 12821127..12821535 102..510 99 <- Minus
arm_3R 12821648..12821749 1..101 94   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:11:45 Download gff for GH23451.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16735373..16735890 668..1185 100 <- Minus
3R 16735953..16736109 511..667 100 <- Minus
3R 16736236..16736644 102..510 99 <- Minus
3R 16736757..16736858 1..101 94   Minus

GH23451.pep Sequence

Translation from 67 to 915

> GH23451.pep
MSLDYEKMSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNER
HLILEQVIIAALDTARFDIATKCTKQLALEFPGSLRVMKFKAMRYEALEQ
YDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFM
SDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTM
GGVENMESARTYYSQALKLNPHNLRALYGIYLCCNHLDNSRAVSSKRKEL
QKLSQWALEQLLTKQTIVPLEAAFGNLEIKSN*

GH23451.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17917-PA 293 GF17917-PA 1..293 1..282 1353 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16802-PA 282 GG16802-PA 1..282 1..282 1484 97.9 Plus
Dere\GG16801-PA 282 GG16801-PA 1..282 1..282 1484 97.9 Plus
Dere\GG11068-PA 159 GG11068-PA 1..159 1..159 828 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18069-PA 293 GH18069-PA 1..293 1..282 1257 80.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3678-PB 282 CG3678-PB 1..282 1..282 1459 100 Plus
CG3678-PA 282 CG3678-PA 1..282 1..282 1459 100 Plus
CG17556-PB 282 CG17556-PB 1..282 1..282 1456 99.6 Plus
CG17556-PA 282 CG17556-PA 1..282 1..282 1456 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23748-PA 293 GI23748-PA 1..293 1..282 1290 82.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22995-PA 293 GL22995-PA 1..293 1..282 1344 86.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14552-PA 293 GA14552-PA 1..293 1..282 1344 86.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15395-PA 282 GM15395-PA 1..282 1..282 1489 98.2 Plus
Dsec\GM24122-PA 278 GM24122-PA 8..278 12..282 1430 98.5 Plus
Dsec\GM22065-PA 120 GM22065-PA 2..120 30..148 605 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20260-PA 282 GD20260-PA 1..282 1..282 1498 98.9 Plus
Dsim\GD20261-PA 282 GD20261-PA 1..282 1..282 1498 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:25:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10594-PA 293 GJ10594-PA 1..293 1..282 1278 81.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12757-PA 293 GK12757-PA 1..293 1..282 1272 81.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26117-PA 282 GE26117-PA 1..282 1..282 1473 97.2 Plus
Dyak\GE26119-PA 282 GE26119-PA 1..282 1..282 1473 97.2 Plus

GH23451.hyp Sequence

Translation from 67 to 915

> GH23451.hyp
MSLDYEKMSWSDVRDQFRTWREETGRHSEEVVQLWVAVLEDKVHKTGNER
HLILEQVIIAALDTARFDIATKCTKQLSLEFPGSLRVMKFKAMRYEALEQ
YDEADEVLDAIIAKDETNAAPRKRKIAILKARGRRLEAIKELNEYLKKFM
SDQEAWHELCNMYLAEGEFGKAAFCMEEVLLHNPHSHLIHQRLAEIRYTM
GGVENMESARTYYSQALKLNPHNLRALYGIYLCCNHLDNSRAVSSKRKEL
QKLSQWALEQLLTKQTIVPLEAAFGNLEIKSN*

GH23451.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17556-PB 282 CG17556-PB 1..282 1..282 1459 100 Plus
CG17556-PA 282 CG17556-PA 1..282 1..282 1459 100 Plus
CG3678-PB 282 CG3678-PB 1..282 1..282 1456 99.6 Plus
CG3678-PA 282 CG3678-PA 1..282 1..282 1456 99.6 Plus