Clone GH23452 Report

Search the DGRC for GH23452

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:234
Well:52
Vector:pOT2
Associated Gene/Transcriptl(2)tid-RE
Protein status:GH23452.pep: gold
Sequenced Size:1502

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
l(2)tid 2010-01-15 Manual selection by Sue Celniker

Clone Sequence Records

GH23452.complete Sequence

1502 bp assembled on 2010-02-13

GenBank Submission: BT120348.1

> GH23452.complete
GATGTTACGGCATGTTGTTGAAAAGCTGAAAATCTGATACTTTTATGGAA
AAATGATGATTTCGTGTAAAAAATTATTCGTGTTCCGGCAGCTGCCGGCG
GTGCGCCGTTGCCTAGCGGCAGCCGCGTTCTCCACGCCACGCGCGACCTC
CTACCGAATCCTCTCCAGCGCCGGGAGCGGAAGTACCCGGGCAGACGCAC
CCCAAGTGCGCCGCCTGCACACCACGCGCGACCTCCTGGCCAAGGACTAC
TACGCCACGCTGGGCGTTGCCAAGAACGCCAACGGCAAGGACATCAAGAA
AGCCTACTACCAGCTGGCCAAGAAGTACCATCCGGACACGAACAAGGAGG
ATCCGGATGCGGGCCGCAAGTTCCAGGAGGTCTCCGAGGCCTACGAAGTG
CTCAGCGACGAGCAGAAGCGCCGTGAGTACGACACCTATGGCCAGACGGC
GGAAAACATTGGTCGCCAGGGCGGCGGATTCCCTGGCGGAGGAGCCGGTG
GCTTTGGCCCCGAGGGTTTCTCGCAGAGCTGGCAGTTCCGCTCGAGCATC
GACCCCGAGGAGCTCTTCCGCAAGATCTTCGGCGAGGGCAACTTTCGAAC
TAACTCGTTCGACGACTTCGCCGACTCCAAGTTCGGATTCGGCCAGGCCC
AGGAGATGGTCATGGACCTGACCTTTGCCCAGGCGGCGCGCGGCGTTAAC
AAGGATGTCAACGTCAACGTGGTGGACCAGTGCCCCAAGTGCGCCGGCAC
CAAGTGCGAGCCGGGCACCAAGCCAGGTCGCTGTCAGTACTGCAACGGCA
CCGGCTTCGAAACGGTGTCCACTGGGCCCTTCGTAATGCGCTCCACTTGC
CGCTACTGCCAGGGCACGCGGCAGCACATTAAGTATCCGTGCAGCGAGTG
CGAGGGCAAGGGCCGCACGGTCCAGCGCCGCAAGGTCACCGTGCCGGTGC
CGGCTGGCATTGAGAACGGGCAAACGGTGCGAATGCAGGTGGGCAGCAAG
GAGCTGTTCGTCACGTTCCGCGTGGAGCGGAGCGACTACTTCCGGCGCGA
GGGCGCCGATGTGCACACGGACGCGGCCATATCCCTGGCCCAGGCGGTGC
TGGGCGGCACTGTGCGTGTCCAGGGCGTATACGAGGATCAGTGGATCAAC
GTGGAGCCGGGCACCTCGTCGCACCACAAGATCATGCTGCGCGGCAAGGG
TCTGAAACGCGTGAATGCCCACGGACACGGCGATCATTACGTGCACGTCA
AGATCACGGTGCCATCGGCAAAGAAGCTGGACAAGAAGCGACTGGCTCTG
ATCGAGGCGTACGCCGAGCTGGAGGAGGACACCCCCGGGCAGATCCACGG
AATCGCGAATCGCAAAGACGGCAGTAAGCAAGCAACGTAAATAATCTCCC
GATCTACCAATGCAATCTCTAAATGTAACTTGGAGCTTGAATTCGTAGTT
GAAATATACGTGCGTTCTATGTGCGAGCTTTATTAAAAAAAAAAAAAAAA
AA

GH23452.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)tid-RA 2227 l(2)tid-RA 241..1627 1..1387 6920 99.9 Plus
l(2)tid-RB 2232 l(2)tid-RB 241..1626 1..1386 6915 99.9 Plus
l(2)tid.a 2214 l(2)tid.a 241..1614 1..1374 6855 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19593267..19594750 1..1484 7285 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23707102..23708588 1..1487 7420 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23708301..23709787 1..1487 7420 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 08:08:15 has no hits.

GH23452.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:09:24 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19593267..19594750 1..1484 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-13 15:12:49 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RA 1..1335 53..1387 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:30:02 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RA 1..1335 53..1387 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:41:47 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RA 1..1335 53..1387 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:35:12 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RE 1..1338 53..1390 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-13 15:12:48 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RA 241..1627 1..1387 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:30:02 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RA 241..1627 1..1387 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:41:47 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RA 22..1408 1..1387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:35:12 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)tid-RE 22..1505 1..1484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:24 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23707102..23708585 1..1484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:24 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23707102..23708585 1..1484 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:24 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23707102..23708585 1..1484 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:41:47 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19594625..19596108 1..1484 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:15:22 Download gff for GH23452.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23708319..23709802 1..1484 99   Plus

GH23452.pep Sequence

Translation from 52 to 1389

> GH23452.pep
MMISCKKLFVFRQLPAVRRCLAAAAFSTPRATSYRILSSAGSGSTRADAP
QVRRLHTTRDLLAKDYYATLGVAKNANGKDIKKAYYQLAKKYHPDTNKED
PDAGRKFQEVSEAYEVLSDEQKRREYDTYGQTAENIGRQGGGFPGGGAGG
FGPEGFSQSWQFRSSIDPEELFRKIFGEGNFRTNSFDDFADSKFGFGQAQ
EMVMDLTFAQAARGVNKDVNVNVVDQCPKCAGTKCEPGTKPGRCQYCNGT
GFETVSTGPFVMRSTCRYCQGTRQHIKYPCSECEGKGRTVQRRKVTVPVP
AGIENGQTVRMQVGSKELFVTFRVERSDYFRREGADVHTDAAISLAQAVL
GGTVRVQGVYEDQWINVEPGTSSHHKIMLRGKGLKRVNAHGHGDHYVHVK
ITVPSAKKLDKKRLALIEAYAELEEDTPGQIHGIANRKDGSKQAT*

GH23452.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13077-PA 505 GF13077-PA 1..451 2..443 1919 85.4 Plus
Dana\GF24701-PA 456 GF24701-PA 82..443 37..425 482 32.2 Plus
Dana\GF15647-PA 391 GF15647-PA 5..341 65..418 257 29.6 Plus
Dana\GF15175-PA 346 GF15175-PA 1..139 62..195 241 42.4 Plus
Dana\GF10450-PA 354 GF10450-PA 1..293 62..363 228 28.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22881-PA 508 GG22881-PA 1..443 1..443 2330 96.8 Plus
Dere\GG15105-PA 450 GG15105-PA 75..432 38..422 462 31 Plus
Dere\GG19654-PA 403 GG19654-PA 7..305 66..377 269 28.3 Plus
Dere\GG10228-PA 389 GG10228-PA 5..341 65..418 263 29.9 Plus
Dere\GG24779-PA 350 GG24779-PA 1..335 62..404 237 27.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21307-PA 504 GH21307-PA 1..451 2..442 1795 77.1 Plus
Dgri\GH15982-PA 412 GH15982-PA 21..401 18..422 413 30.3 Plus
Dgri\GH10346-PA 397 GH10346-PA 5..342 65..418 258 30.2 Plus
Dgri\GH11404-PA 346 GH11404-PA 1..139 62..195 231 41.7 Plus
Dgri\GH19043-PA 405 GH19043-PA 7..307 66..377 228 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)tid-PE 445 CG5504-PE 1..445 1..445 2356 100 Plus
l(2)tid-PB 520 CG5504-PB 1..445 1..445 2356 100 Plus
l(2)tid-PA 447 CG5504-PA 1..445 1..445 2356 100 Plus
l(2)tid-PC 507 CG5504-PC 1..443 1..443 2337 99.3 Plus
l(2)tid-PD 514 CG5504-PD 1..440 1..440 2333 100 Plus
CG7387-PA 449 CG7387-PA 74..431 38..422 466 31.3 Plus
DnaJ-H-PA 389 CG9828-PA 7..341 67..418 277 30.7 Plus
DnaJ-H-PB 389 CG9828-PB 7..341 67..418 277 30.7 Plus
DnaJ-H-PC 440 CG9828-PC 7..341 67..418 277 30.7 Plus
Droj2-PE 403 CG8863-PE 7..305 66..377 274 27.3 Plus
Droj2-PD 403 CG8863-PD 7..305 66..377 274 27.3 Plus
Droj2-PC 403 CG8863-PC 7..305 66..377 274 27.3 Plus
Droj2-PB 403 CG8863-PB 7..305 66..377 274 27.3 Plus
Droj2-PA 403 CG8863-PA 7..305 66..377 274 27.3 Plus
shv-PA 354 CG4164-PA 11..338 51..416 248 26.7 Plus
CG5001-PC 346 CG5001-PC 1..120 62..194 242 44.4 Plus
CG5001-PD 350 CG5001-PD 1..120 62..194 242 44.4 Plus
CG5001-PA 350 CG5001-PA 1..120 62..194 242 44.4 Plus
CG5001-PB 350 CG5001-PB 1..120 62..194 242 44.4 Plus
DnaJ-1-PA 334 CG10578-PA 1..295 62..391 231 28.5 Plus
DnaJ-1-PB 334 CG10578-PB 1..295 62..391 231 28.5 Plus
CG3061-PA 370 CG3061-PA 73..219 27..179 211 37.4 Plus
CG2887-PA 342 CG2887-PA 1..132 62..188 208 38.8 Plus
mrj-PA 259 CG8448-PA 3..117 65..177 206 42.4 Plus
mrj-PC 259 CG8448-PC 3..117 65..177 206 42.4 Plus
mrj-PB 259 CG8448-PB 3..117 65..177 206 42.4 Plus
mrj-PD 259 CG8448-PD 3..117 65..177 206 42.4 Plus
Csp-PA 223 CG6395-PA 9..93 53..141 199 48.3 Plus
Csp-PC 228 CG6395-PC 9..93 53..141 199 48.3 Plus
Csp-PE 244 CG6395-PE 9..93 53..141 199 48.3 Plus
Csp-PD 244 CG6395-PD 9..93 53..141 199 48.3 Plus
Csp-PF 249 CG6395-PF 9..93 53..141 199 48.3 Plus
Csp-PB 249 CG6395-PB 9..93 53..141 199 48.3 Plus
CG7130-PA 128 CG7130-PA 1..69 62..131 183 47.1 Plus
mrj-PG 346 CG8448-PG 3..109 65..162 182 39.3 Plus
mrj-PH 346 CG8448-PH 3..109 65..162 182 39.3 Plus
mrj-PE 346 CG8448-PE 3..109 65..162 182 39.3 Plus
P58IPK-PA 498 CG8286-PA 364..495 33..162 164 31.8 Plus
CG32641-PA 132 CG32641-PA 1..90 62..146 162 39.6 Plus
CG32640-PA 132 CG32640-PA 1..90 62..146 162 39.6 Plus
Tpr2-PE 464 CG4599-PE 357..462 64..189 159 34.1 Plus
Tpr2-PB 464 CG4599-PB 357..462 64..189 159 34.1 Plus
Tpr2-PC 478 CG4599-PC 371..476 64..189 159 34.1 Plus
Tpr2-PD 508 CG4599-PD 401..506 64..189 159 34.1 Plus
Tpr2-PA 508 CG4599-PA 401..506 64..189 159 34.1 Plus
CG11035-PB 231 CG11035-PB 28..89 66..127 152 41.9 Plus
CG11035-PA 231 CG11035-PA 28..89 66..127 152 41.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19741-PA 512 GI19741-PA 1..459 2..442 1794 75.3 Plus
Dmoj\GI16633-PA 430 GI16633-PA 76..416 56..425 450 31.7 Plus
Dmoj\Tes40-PA 380 GI21193-PA 5..333 65..419 256 29.1 Plus
Dmoj\GI15199-PA 325 GI15199-PA 1..256 62..356 237 29.8 Plus
Dmoj\GI21690-PA 355 GI21690-PA 21..339 61..416 212 26 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16883-PA 525 GL16883-PA 1..464 2..445 1799 78.8 Plus
Dper\GL22564-PA 318 GL22564-PA 8..307 105..425 407 31.8 Plus
Dper\GL24772-PA 392 GL24772-PA 5..344 65..428 254 28.8 Plus
Dper\GL20776-PA 230 GL20776-PA 1..106 62..177 221 44.5 Plus
Dper\GL15626-PA 318 GL15626-PA 1..137 62..195 219 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24322-PA 525 GA24322-PA 1..464 2..445 1794 78.3 Plus
Dpse\GA20316-PA 427 GA20316-PA 79..416 66..425 489 33.6 Plus
Dpse\GA22062-PA 392 GA22062-PA 5..344 65..428 254 28.8 Plus
Dpse\GA10408-PA 353 GA10408-PA 1..106 62..177 230 45.4 Plus
Dpse\GA18584-PA 346 GA18584-PA 1..139 62..195 226 41.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16041-PA 489 GM16041-PA 1..428 1..443 1976 87.2 Plus
Dsec\GM24961-PA 449 GM24961-PA 74..431 38..422 421 30.5 Plus
Dsec\GM25845-PA 389 GM25845-PA 5..341 65..418 266 30.7 Plus
Dsec\DnaJ-1-PA 337 GM13903-PA 1..322 62..406 229 28.1 Plus
Dsec\GM16806-PA 350 GM16806-PA 1..120 62..194 229 44.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11789-PA 505 GD11789-PA 1..443 1..443 2363 98.2 Plus
Dsim\GD13011-PA 402 GD13011-PA 27..384 38..422 417 30.5 Plus
Dsim\GD22085-PA 389 GD22085-PA 5..341 65..418 265 30.7 Plus
Dsim\GD18906-PA 403 GD18906-PA 7..305 66..377 235 27.1 Plus
Dsim\GD23083-PA 346 GD23083-PA 1..331 62..404 230 26.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\l(2)tid-PA 516 GJ18004-PA 1..456 2..442 1765 76.7 Plus
Dvir\GJ12888-PA 441 GJ12888-PA 48..425 18..422 418 30.4 Plus
Dvir\GJ10994-PA 393 GJ10994-PA 5..340 65..418 276 29.6 Plus
Dvir\GJ14805-PA 325 GJ14805-PA 1..285 62..391 250 29.7 Plus
Dvir\GJ10422-PA 403 GJ10422-PA 7..305 66..377 227 26.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23073-PA 505 GK23073-PA 1..456 2..442 1783 78.2 Plus
Dwil\GK10817-PA 456 GK10817-PA 104..438 62..422 432 32.2 Plus
Dwil\GK14806-PA 396 GK14806-PA 5..340 65..418 279 28.6 Plus
Dwil\GK16875-PA 356 GK16875-PA 1..341 62..406 229 28.6 Plus
Dwil\GK13941-PA 403 GK13941-PA 7..305 66..377 228 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14318-PA 507 GE14318-PA 1..443 1..443 2345 97.3 Plus
Dyak\GE21329-PA 450 GE21329-PA 75..432 38..422 477 31.6 Plus
Dyak\GE11908-PA 389 GE11908-PA 5..341 65..418 268 30.9 Plus
Dyak\GE17451-PA 350 GE17451-PA 1..335 62..404 237 27.2 Plus
Dyak\GE26270-PA 403 GE26270-PA 7..305 66..377 236 27.1 Plus

GH23452.hyp Sequence

Translation from 52 to 1389

> GH23452.hyp
MMISCKKLFVFRQLPAVRRCLAAAAFSTPRATSYRILSSAGSGSTRADAP
QVRRLHTTRDLLAKDYYATLGVAKNANGKDIKKAYYQLAKKYHPDTNKED
PDAGRKFQEVSEAYEVLSDEQKRREYDTYGQTAENIGRQGGGFPGGGAGG
FGPEGFSQSWQFRSSIDPEELFRKIFGEGNFRTNSFDDFADSKFGFGQAQ
EMVMDLTFAQAARGVNKDVNVNVVDQCPKCAGTKCEPGTKPGRCQYCNGT
GFETVSTGPFVMRSTCRYCQGTRQHIKYPCSECEGKGRTVQRRKVTVPVP
AGIENGQTVRMQVGSKELFVTFRVERSDYFRREGADVHTDAAISLAQAVL
GGTVRVQGVYEDQWINVEPGTSSHHKIMLRGKGLKRVNAHGHGDHYVHVK
ITVPSAKKLDKKRLALIEAYAELEEDTPGQIHGIANRKDGSKQAT*

GH23452.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)tid-PE 445 CG5504-PE 1..445 1..445 2356 100 Plus
l(2)tid-PB 520 CG5504-PB 1..445 1..445 2356 100 Plus
l(2)tid-PA 447 CG5504-PA 1..445 1..445 2356 100 Plus
l(2)tid-PC 507 CG5504-PC 1..443 1..443 2337 99.3 Plus
l(2)tid-PD 514 CG5504-PD 1..440 1..440 2333 100 Plus