Clone GH23527 Report

Search the DGRC for GH23527

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:235
Well:27
Vector:pOT2
Associated Gene/TranscripteIF4E-4-RA
Protein status:GH23527.pep: gold
Sequenced Size:1053

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10124 2003-01-01 Sim4 clustering to Release 3
CG10124 2005-01-26 Blastp of sequenced clone
eIF4E-4 2008-04-29 Release 5.5 accounting
eIF4E-4 2008-08-15 Release 5.9 accounting
eIF4E-4 2008-12-18 5.12 accounting

Clone Sequence Records

GH23527.complete Sequence

1053 bp (1053 high quality bases) assembled on 2005-01-26

GenBank Submission: BT021432

> GH23527.complete
CCCCTTATACACATTCTCGTGTTGTGGCTGTGAAATCGTTTTTCCCAGGT
GATCTGAAATTTTATTAGCATCCATTGTTATAAATTTGAATCAGTATAAA
AGATCATTCGCCAAATACACTCAACCATGCTGACGACCCAGCAGACCGAA
TTCAAGATGATGGACAACGGCACCGAGACGCTGGCCGATTCTCCTTCGAG
TTCCAGCGAGGATCTGAAAACGCTTTCGGATATGGATATTCGCAAGCCCG
TAACGGAGATTGTTGATTTGCGCCTTAAGCATCCGCTAGAGAACACTTGG
ACACTGTGGTACTTGGAGAATGATCGCAGCAAGAACTGGGAGGACATGCA
GAACGAGATTACTAGCTTTGACATGGTCGAGGACTTCTGGAGTCTCTACA
ATCACATTAAGCAGCCATCTGAGATTAGAGTGGGCAGCGATTATTCTTTG
TTCAAGAAGGGCATTCAGCCAATGTGGGAGGATGATGCGAACAAGTTCGG
CGGCCGTTGGGTCATCAATATGGGGCGTGGCTCCAAAGCGGAGCTCGACA
AGCTTTGGTTAGATGTGCTACTCATACTGATTGGCGAGGCCTTTGAAAAC
ACCGAGGAAGTCTGCGGCGCCGTTATCAACTTGCGCGGGAAGAGCAACAA
AATTTCGATTTGGACCGCCAACGGGCACAACGAGCTGGCCGTCATGGAGA
TTGGACTCAAGTTACGCGACCTGCTCGTCCTTCCGCCCCACCAACTGCAG
TACCAGCTGCACAAGGACACTATGTGCAAGCAGGGATCGGTGATCAAAGC
GGTTTATTGCGTGTAAGCCGTCTCCGTTTTGGATGCCACCCACCACTCCA
TCCACCAACCACCCACATTTCCATGGCCGCTTATGCCTCTGAATGCTGTT
TCCAGCGCGTGTATCCGAAAAATATAAAAAAAAAAATGTATCTTGAAACA
GAACTGGTTTTATGAATTTGACCATGTTAAAAATTGCAAAGAAAGATGTA
AATACATAGTGTTGTGAATGCATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

GH23527.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-RA 1112 eIF4E-4-RA 79..1102 1..1024 5105 99.9 Plus
eIF-4E-RG 1380 eIF-4E-RG 600..817 298..515 370 77.9 Plus
eIF-4E-RC 1453 eIF-4E-RC 635..852 298..515 370 77.9 Plus
eIF-4E-RG 1380 eIF-4E-RG 832..1021 530..719 230 74.7 Plus
eIF-4E-RC 1453 eIF-4E-RC 867..1056 530..719 230 74.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6657537..6658004 468..1 2340 100 Minus
chr3L 24539361 chr3L 6656595..6656962 1023..656 1780 98.9 Minus
chr3L 24539361 chr3L 6657386..6657485 567..468 500 100 Minus
chr3L 24539361 chr3L 6657218..6657306 655..567 430 98.9 Minus
chr3L 24539361 chr3L 9392481..9392649 466..298 290 78.1 Minus
chrX 22417052 chrX 1053115..1053302 485..298 235 75 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6665166..6665633 468..1 2340 100 Minus
3L 28110227 3L 6664223..6664591 1024..656 1830 99.7 Minus
3L 28110227 3L 6665015..6665114 567..468 500 100 Minus
3L 28110227 3L 6664847..6664935 655..567 445 100 Minus
3L 28110227 3L 9400584..9400752 466..298 290 78.1 Minus
X 23542271 X 1159150..1159337 485..298 235 75 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6658266..6658733 468..1 2340 100 Minus
3L 28103327 3L 6657323..6657691 1024..656 1830 99.7 Minus
3L 28103327 3L 6658115..6658214 567..468 500 100 Minus
3L 28103327 3L 6657947..6658035 655..567 445 100 Minus
3L 28103327 3L 9393684..9393852 466..298 290 78.1 Minus
X 23527363 X 1167248..1167435 485..298 235 75 Minus
3L 28103327 3L 9393202..9393275 650..577 145 79.7 Minus
Blast to na_te.dros performed on 2019-03-16 19:30:51 has no hits.

GH23527.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:31:37 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6656595..6656962 656..1023 98 <- Minus
chr3L 6657218..6657305 568..655 98 <- Minus
chr3L 6657386..6657485 468..567 100 <- Minus
chr3L 6657538..6658004 1..467 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:53:59 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 1..690 127..816 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:12:35 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 1..690 127..816 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:42:15 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 1..690 127..816 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:57:08 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 1..690 127..816 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:38 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 1..690 127..816 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:07:32 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 9..1031 1..1023 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:12:35 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 9..1031 1..1023 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:15 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 9..1031 1..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:57:08 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 9..1027 1..1019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:38 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-4-RA 9..1031 1..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:37 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6664224..6664591 656..1023 99 <- Minus
3L 6664847..6664934 568..655 100 <- Minus
3L 6665015..6665114 468..567 100 <- Minus
3L 6665167..6665633 1..467 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:37 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6664224..6664591 656..1023 99 <- Minus
3L 6664847..6664934 568..655 100 <- Minus
3L 6665015..6665114 468..567 100 <- Minus
3L 6665167..6665633 1..467 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:31:37 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6664224..6664591 656..1023 99 <- Minus
3L 6664847..6664934 568..655 100 <- Minus
3L 6665015..6665114 468..567 100 <- Minus
3L 6665167..6665633 1..467 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:15 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6657324..6657691 656..1023 99 <- Minus
arm_3L 6657947..6658034 568..655 100 <- Minus
arm_3L 6658115..6658214 468..567 100 <- Minus
arm_3L 6658267..6658733 1..467 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:32:29 Download gff for GH23527.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6658115..6658214 468..567 100 <- Minus
3L 6657947..6658034 568..655 100 <- Minus
3L 6657324..6657691 656..1023 99 <- Minus
3L 6658267..6658733 1..467 100   Minus

GH23527.pep Sequence

Translation from 126 to 815

> GH23527.pep
MLTTQQTEFKMMDNGTETLADSPSSSSEDLKTLSDMDIRKPVTEIVDLRL
KHPLENTWTLWYLENDRSKNWEDMQNEITSFDMVEDFWSLYNHIKQPSEI
RVGSDYSLFKKGIQPMWEDDANKFGGRWVINMGRGSKAELDKLWLDVLLI
LIGEAFENTEEVCGAVINLRGKSNKISIWTANGHNELAVMEIGLKLRDLL
VLPPHQLQYQLHKDTMCKQGSVIKAVYCV*

GH23527.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10894-PA 230 GF10894-PA 1..230 1..229 1072 87 Plus
Dana\GF23736-PA 261 GF23736-PA 52..261 28..229 753 68.6 Plus
Dana\GF22031-PA 458 GF22031-PA 280..458 52..229 671 65.9 Plus
Dana\GF10327-PA 271 GF10327-PA 79..271 35..229 655 58.5 Plus
Dana\GF25106-PA 244 GF25106-PA 62..242 47..227 542 51.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15032-PA 229 GG15032-PA 1..229 1..229 1155 93.9 Plus
Dere\GG14044-PA 250 GG14044-PA 70..250 50..229 728 73.5 Plus
Dere\GG14453-PA 231 GG14453-PA 39..231 38..229 664 60.1 Plus
Dere\GG12718-PA 448 GG12718-PA 270..448 52..229 629 61.5 Plus
Dere\GG14292-PA 244 GG14292-PA 62..242 47..227 542 51.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15637-PA 233 GH15637-PA 1..233 1..229 843 69.1 Plus
Dgri\GH16860-PA 275 GH16860-PA 95..275 50..229 736 73.5 Plus
Dgri\GH14978-PA 232 GH14978-PA 47..232 44..229 645 58.6 Plus
Dgri\GH12729-PA 300 GH12729-PA 101..298 36..227 600 57.1 Plus
Dgri\GH24331-PA 222 GH24331-PA 42..222 50..229 558 55.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E4-PA 229 CG10124-PA 1..229 1..229 1216 100 Plus
eIF4E1-PC 248 CG4035-PC 69..246 51..227 724 74.7 Plus
eIF4E1-PI 259 CG4035-PI 80..257 51..227 724 74.7 Plus
eIF4E1-PH 259 CG4035-PH 80..257 51..227 724 74.7 Plus
eIF4E1-PD 259 CG4035-PD 80..257 51..227 724 74.7 Plus
eIF4E1-PB 259 CG4035-PB 80..257 51..227 724 74.7 Plus
eIF4E1-PF 259 CG4035-PF 80..257 51..227 724 74.7 Plus
eIF4E1-PE 259 CG4035-PE 80..257 51..227 724 74.7 Plus
eIF4E1-PG 259 CG4035-PG 80..257 51..227 724 74.7 Plus
eIF4E1-PA 259 CG4035-PA 80..257 51..227 724 74.7 Plus
eIF4E5-PA 232 CG8277-PA 47..230 44..227 666 62 Plus
eIF4E7-PA 429 CG32859-PA 233..429 35..229 603 55.8 Plus
eIF4E3-PA 244 CG8023-PA 62..242 47..227 559 50.3 Plus
eIF4E6-PC 173 CG1442-PC 32..161 51..180 418 56.9 Plus
eIF4E6-PB 173 CG1442-PB 32..161 51..180 418 56.9 Plus
eIF4E6-PA 173 CG1442-PA 32..161 51..180 418 56.9 Plus
eIF4EHP-PA 223 CG33100-PA 25..211 34..216 251 28.9 Plus
eIF4EHP-PD 242 CG33100-PD 25..211 34..216 251 28.9 Plus
eIF4EHP-PB 248 CG33100-PB 25..172 34..178 213 29.8 Plus
eIF4EHP-PC 186 CG33100-PC 25..164 34..170 211 30.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12684-PA 246 GI12684-PA 1..246 1..229 886 68.7 Plus
Dmoj\GI13141-PA 238 GI13141-PA 57..238 48..229 653 61.5 Plus
Dmoj\GI14982-PA 311 GI14982-PA 133..309 52..227 653 65.5 Plus
Dmoj\GI13083-PA 125 GI13083-PA 43..123 148..227 285 66.7 Plus
Dmoj\GI16776-PA 198 GI16776-PA 95..162 47..114 231 57.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13241-PA 223 GL13241-PA 3..223 7..229 796 66.8 Plus
Dper\GL12850-PA 198 GL12850-PA 7..198 40..229 730 70.8 Plus
Dper\GL26506-PA 219 GL26506-PA 40..217 50..227 534 53.9 Plus
Dper\GL14400-PA 233 GL14400-PA 9..231 2..227 497 44.5 Plus
Dper\GL18042-PA 204 GL18042-PA 49..204 51..229 375 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28599-PA 223 GA28599-PA 18..223 24..229 803 70.9 Plus
Dpse\GA28658-PA 263 GA28658-PA 66..263 37..229 737 69.7 Plus
Dpse\GA28380-PA 227 GA28380-PA 49..227 51..229 644 62 Plus
Dpse\GA24628-PA 234 GA24628-PA 56..232 51..227 557 55.4 Plus
Dpse\GA28966-PA 219 GA28966-PA 40..217 50..227 534 53.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13832-PA 229 GM13832-PA 1..229 1..229 1203 98.3 Plus
Dsec\GM24878-PA 269 GM24878-PA 90..269 51..229 724 73.9 Plus
Dsec\GM25004-PA 233 GM25004-PA 43..233 40..229 636 58.6 Plus
Dsec\GM18997-PA 422 GM18997-PA 243..422 51..229 578 56.7 Plus
Dsec\GM25034-PA 244 GM25034-PA 62..242 47..227 545 50.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13118-PA 229 GD13118-PA 1..229 1..229 1194 97.8 Plus
Dsim\GD12928-PA 269 GD12928-PA 90..269 51..229 725 73.9 Plus
Dsim\GD14038-PA 233 GD14038-PA 43..233 40..229 640 58.1 Plus
Dsim\GD14067-PA 244 GD14067-PA 62..242 47..227 547 51.4 Plus
Dsim\GD16435-PA 420 GD16435-PA 248..389 51..192 514 60.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12668-PA 230 GJ12668-PA 1..230 1..229 902 73 Plus
Dvir\GJ13832-PA 272 GJ13832-PA 92..270 50..227 740 74.9 Plus
Dvir\GJ19475-PA 323 GJ19475-PA 140..323 47..229 717 71.2 Plus
Dvir\GJ13889-PA 238 GJ13889-PA 57..238 48..229 659 61.5 Plus
Dvir\GJ16331-PA 301 GJ16331-PA 114..299 43..227 654 63.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12583-PA 280 GK12583-PA 1..235 1..229 849 71.5 Plus
Dwil\GK20927-PA 266 GK20927-PA 86..266 50..229 747 74.6 Plus
Dwil\GK14373-PA 235 GK14373-PA 57..233 51..227 725 72.9 Plus
Dwil\GK25580-PA 300 GK25580-PA 111..300 41..229 711 67.9 Plus
Dwil\GK16243-PA 360 GK16243-PA 162..358 32..227 665 60.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20475-PA 229 GE20475-PA 1..229 1..229 1151 93.9 Plus
Dyak\GE21247-PA 269 GE21247-PA 89..269 50..229 730 73.5 Plus
Dyak\GE21642-PA 231 GE21642-PA 46..231 44..229 679 61.8 Plus
Dyak\GE16544-PA 448 GE16544-PA 235..448 18..229 633 53.9 Plus
Dyak\GE20721-PA 244 GE20721-PA 62..242 47..227 532 49.2 Plus

GH23527.hyp Sequence

Translation from 126 to 815

> GH23527.hyp
MLTTQQTEFKMMDNGTETLADSPSSSSEDLKTLSDMDIRKPVTEIVDLRL
KHPLENTWTLWYLENDRSKNWEDMQNEITSFDMVEDFWSLYNHIKQPSEI
RVGSDYSLFKKGIQPMWEDDANKFGGRWVINMGRGSKAELDKLWLDVLLI
LIGEAFENTEEVCGAVINLRGKSNKISIWTANGHNELAVMEIGLKLRDLL
VLPPHQLQYQLHKDTMCKQGSVIKAVYCV*

GH23527.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-4-PA 229 CG10124-PA 1..229 1..229 1216 100 Plus
eIF-4E-PC 248 CG4035-PC 69..246 51..227 724 74.7 Plus
eIF-4E-PI 259 CG4035-PI 80..257 51..227 724 74.7 Plus
eIF-4E-PH 259 CG4035-PH 80..257 51..227 724 74.7 Plus
eIF-4E-PD 259 CG4035-PD 80..257 51..227 724 74.7 Plus