Clone GH23568 Report

Search the DGRC for GH23568

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:235
Well:68
Vector:pOT2
Associated Gene/Transcriptparvin-RA
Protein status:GH23568.pep: gold
Sequenced Size:1836

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32528 2003-01-01 Sim4 clustering to Release 3
CG32528 2004-10-22 Blastp of sequenced clone
CG32528 2008-04-29 Release 5.5 accounting
CG32528 2008-08-15 Release 5.9 accounting
CG32528 2008-12-18 5.12 accounting

Clone Sequence Records

GH23568.complete Sequence

1836 bp (1836 high quality bases) assembled on 2004-10-22

GenBank Submission: BT016127

> GH23568.complete
TGGGCCTGCGATCAGGTGGCAGCCCCAAGGGAAACTGATTGCTCAGCTCC
GCCCGAAACGAATCGAAACAATAACACAAACTGTTCACTTAGTCCGGAAT
TCTTGGAATCCAGCAGCACCATGTCCACACTGAACCGCCCTAAATCCCCG
CACACGCCCACCGCCATTAAAAAGGGCGAGAAGGAGGACAGCTTCTGGGA
CAAGTTCAGCACTTTGGGCCGCAAACGCGGCACCCGCGAAGTGAAGAAGG
TCCAAGAGGAGGGCAAGTACGCCATCGACTCGCCTGGATCGCCCAGCCAG
TATGACATCCCGCCGGAGGACTATGCCCTGCGCGAGCACGAACAGCGCGC
CGTCATCGATCCACAGTCCATCAGTGATCCCCAGGTGATAAAGCTGCAGC
GCATCCTCGTCGACTGGATCAACGACGAGCTGGCCGAGCAGCGCATAATT
GTTCAGCACCTGGAAGAGGACATGTATGACGGCCAGGTGCTGCACAAGCT
GTGGGAGAAGCTCACCGGCAAGAAGCTGGACGTTCCTGAGGTCACCCAGT
CAGAGCAGGGCCAGCACGAGAAGCTCAACATCGTCCTGAAGGCCGTCAAC
CATACACTCGGCTTTCACCAAAAGATTCCCAAGTGGTCGGTGGCCAGCGT
GCACTCGAAGAACATTGTGGCCATATTACATCTGCTGGTGGCACTGGTGC
GTCACTTCCGGGCGCCCGTTCGCCTGCCAGAGAACGTGTTCGTGACCGTC
GTGATTGCGGAGAAGAATGCGGGCGTGCTGAACGCGCAGAAGTTCCAGGA
GCAGATAACGTCCGAGTACGACGACCTGGGCATGCGCTGCGAAAAGGACG
CCTTCGACACGCTGATCGACTGTGCGCCGGACAAGCTGGCCGTGGTGAAG
AAGTCCTTGATCACGTTCGTGAACAAGCACCTGGCCAAGCTGAACTTTGA
GATCAGCGATCTGAACACGGACTTTCGCGACGGCGTATACCTGTGCCTGC
TGATGGGCCTGCTCGGTGGATTCTTTGTGCCGCTGCACGAGTTCCATTTG
ACGCCGCAGGACGTGGATCAGATGGTCAGCAACGTGGCCTTCGCCTTCGA
CCTGATGCAGGACGTGGGCCTGCCCAAACCAAAGGCGCGGCCGGAGGACA
TCGTGAACATGGACCTCAAGTCCACCCTGCGCGTCCTATACAGCCTGTTC
ACCATGTTCAGGGACTTCGCCTGAGTGAAACCCGGATGGAACGAGCCAGC
GGGTTGCAGGAGCAACAAGCGGCGCCAATTTTACATTTTATATTAACTTT
TTGATAGTGTTTACACGCCTAATTTATGTGCGTTCTCGAAACTGATTGTA
GGCGATGCAGCGGTTAAAGCTTACTGATCCTAACTCTCAAAACCACAACT
AAATGCTGCGTCGCGTATAATCAGCCCAAGGAATGTTTATATATATATAT
ATATATTTATGTGTCGTACGTCTAACCACTGCGATCTGCTCCAGATTCAG
ATTGCTCGGAACAGGAAGGAGCAGAGCAGAGCAGAGCTAACCCAAACCCA
AAATCCGGCGGCCAGTTGTTAACTTGTCTTACTCACGTGCCAGACGTTGT
AGTTGTTACTAAGTGAATTTATTGTATTAATACATTATTTGAACACAATA
ACCGAGATTGTGCCTTTAGATCACACAGAGCTTTTGCAAATTATGTCACA
GATCAGATTTTAACGCTGTAAATGTAGAAGTTTACGGAAAAGTCTTAAAA
AAAAATTTTATTGTGTACGTTAAAAATTTGGATCAGAAAAATCAATAAAT
ATTGCCAATAGCAAAAAAAAAAAAAAAAAAAAAAAA

GH23568.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32528-RA 1824 CG32528-RA 13..1824 1..1812 9060 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19635961..19637169 604..1812 6030 99.9 Plus
chrX 22417052 chrX 19635522..19635793 332..603 1360 100 Plus
chrX 22417052 chrX 19634780..19635020 1..241 1205 100 Plus
chrX 22417052 chrX 19635351..19635443 240..332 465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19747250..19748459 604..1813 6050 100 Plus
X 23542271 X 19746811..19747082 332..603 1360 100 Plus
X 23542271 X 19746069..19746309 1..241 1205 100 Plus
X 23542271 X 19746640..19746732 240..332 465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19755348..19756557 604..1813 6050 100 Plus
X 23527363 X 19754909..19755180 332..603 1360 100 Plus
X 23527363 X 19754167..19754407 1..241 1205 100 Plus
X 23527363 X 19754738..19754830 240..332 465 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:55:32 has no hits.

GH23568.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:56:40 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19634780..19635020 1..241 100 -> Plus
chrX 19635353..19635442 242..331 100 -> Plus
chrX 19635522..19635793 332..603 100 -> Plus
chrX 19635961..19637169 604..1812 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:05 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:30:09 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:34:41 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:14:03 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:45:56 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 1..1104 121..1224 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:34:26 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 13..1824 1..1812 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:30:09 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 13..1824 1..1812 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:34:41 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RA 13..1824 1..1812 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:14:03 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
CG32528-RA 13..1824 1..1812 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:56 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
parvin-RB 29..1840 1..1812 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:56:40 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
X 19746069..19746309 1..241 100 -> Plus
X 19746642..19746731 242..331 100 -> Plus
X 19746811..19747082 332..603 100 -> Plus
X 19747250..19748458 604..1812 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:56:40 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
X 19746069..19746309 1..241 100 -> Plus
X 19746642..19746731 242..331 100 -> Plus
X 19746811..19747082 332..603 100 -> Plus
X 19747250..19748458 604..1812 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:56:40 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
X 19746069..19746309 1..241 100 -> Plus
X 19746642..19746731 242..331 100 -> Plus
X 19746811..19747082 332..603 100 -> Plus
X 19747250..19748458 604..1812 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:34:41 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19640102..19640342 1..241 100 -> Plus
arm_X 19640675..19640764 242..331 100 -> Plus
arm_X 19640844..19641115 332..603 100 -> Plus
arm_X 19641283..19642491 604..1812 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:50:48 Download gff for GH23568.complete
Subject Subject Range Query Range Percent Splice Strand
X 19754167..19754407 1..241 100 -> Plus
X 19754740..19754829 242..331 100 -> Plus
X 19754909..19755180 332..603 100 -> Plus
X 19755348..19756556 604..1812 100   Plus

GH23568.hyp Sequence

Translation from 0 to 1223

> GH23568.hyp
WACDQVAAPRETDCSAPPETNRNNNTNCSLSPEFLESSSTMSTLNRPKSP
HTPTAIKKGEKEDSFWDKFSTLGRKRGTREVKKVQEEGKYAIDSPGSPSQ
YDIPPEDYALREHEQRAVIDPQSISDPQVIKLQRILVDWINDELAEQRII
VQHLEEDMYDGQVLHKLWEKLTGKKLDVPEVTQSEQGQHEKLNIVLKAVN
HTLGFHQKIPKWSVASVHSKNIVAILHLLVALVRHFRAPVRLPENVFVTV
VIAEKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLIDCAPDKLAVVK
KSLITFVNKHLAKLNFEISDLNTDFRDGVYLCLLMGLLGGFFVPLHEFHL
TPQDVDQMVSNVAFAFDLMQDVGLPKPKARPEDIVNMDLKSTLRVLYSLF
TMFRDFA*

GH23568.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-PB 367 CG32528-PB 1..367 41..407 1904 100 Plus
parvin-PA 367 CG32528-PA 1..367 41..407 1904 100 Plus

GH23568.pep Sequence

Translation from 120 to 1223

> GH23568.pep
MSTLNRPKSPHTPTAIKKGEKEDSFWDKFSTLGRKRGTREVKKVQEEGKY
AIDSPGSPSQYDIPPEDYALREHEQRAVIDPQSISDPQVIKLQRILVDWI
NDELAEQRIIVQHLEEDMYDGQVLHKLWEKLTGKKLDVPEVTQSEQGQHE
KLNIVLKAVNHTLGFHQKIPKWSVASVHSKNIVAILHLLVALVRHFRAPV
RLPENVFVTVVIAEKNAGVLNAQKFQEQITSEYDDLGMRCEKDAFDTLID
CAPDKLAVVKKSLITFVNKHLAKLNFEISDLNTDFRDGVYLCLLMGLLGG
FFVPLHEFHLTPQDVDQMVSNVAFAFDLMQDVGLPKPKARPEDIVNMDLK
STLRVLYSLFTMFRDFA*

GH23568.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20217-PA 367 GF20217-PA 1..367 1..367 1781 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19255-PA 367 GG19255-PA 1..367 1..367 1932 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17695-PA 367 GH17695-PA 1..367 1..367 1804 94.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
parvin-PB 367 CG32528-PB 1..367 1..367 1904 100 Plus
parvin-PA 367 CG32528-PA 1..367 1..367 1904 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16102-PA 367 GI16102-PA 1..367 1..367 1826 95.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15018-PA 367 GL15018-PA 1..367 1..367 1914 97 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22568-PA 367 GA22568-PA 1..367 1..367 1914 97 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22992-PA 367 GM22992-PA 1..367 1..367 1940 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17466-PA 367 GD17466-PA 1..367 1..367 1940 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15752-PA 367 GJ15752-PA 1..367 1..367 1829 95.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25282-PA 367 GK25282-PA 1..367 1..367 1832 95.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15874-PA 367 GE15874-PA 1..367 1..367 1948 99.5 Plus