Clone GH23604 Report

Search the DGRC for GH23604

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:236
Well:4
Vector:pOT2
Associated Gene/TranscriptCG33692-RA
Protein status:GH23604.pep: wuzgold
Preliminary Size:2158
Sequenced Size:2216

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4571 2001-01-01 Release 2 assignment
CG32737 2001-07-04 Blastp of sequenced clone
CG33692 2008-04-29 Release 5.5 accounting
CG33692 2008-08-15 Release 5.9 accounting
CG33691 2008-08-15 Release 5.9 accounting
CG33692 2008-12-18 5.12 accounting
CG33691 2008-12-18 5.12 accounting

Clone Sequence Records

GH23604.complete Sequence

2216 bp (2216 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060337

> GH23604.complete
CGGCTGTGCGTCATACCCGAAATACCCACCAACAACATGAACCTGACGCC
CTACAAGGTGCTCAAGGTTGCGTGGACAAGCATCTGGTGCCCTGCATCAA
CATGAAGGCCTACAACGAATCCGAACAGCTGATGACGCTCATCGAGTTCC
AGAAGAACTTCTTCCCCTCAGTGCCGCTGGATCATTGCAAGCGATTGATC
GAGGCCCTCGGCGTGGAGCTCTACAAGGCAAATCGGCGACAAGTGCAGAT
CCTGATGGAGTACGATCGCAACTACAACGAAAACATGCCACTGGTGCAAG
TGCGCGACATCATCAAGTACATGACACAGCTGACCTTTATGACGCGCCAG
TCGGAGCAGCCGCCAGCTAAGAGGACGCGCACGAGCTAGGAATTAAGCTG
GGGAGCACAACATTTGCCACCAACAACAACCACAATAGCCACAGGCACAG
GCACACCAACAACACCACCGTTAAGCACAGCAGCCACAACAAGCAGCCAC
ACAACTGCCACAGTTCTCACACGAACAACAACTGCGGCGTCCGCAGCGAT
AGCACCACCAACTTCGGTGGCAGCCACATCGTTGAGGAGACGGGCGCTCA
CACCGCCAGCGAATGTTAGTGGTGATGAAGTGCTGGCCAGGCGGAGGGCA
CTAGCGCCACCGCCAGCTCCGGCAGTTCCAGCCACACCACCCGGAGCGGG
AACCATTGGATCTCCTGCACTATCAGCAACACCTGTACACACCACCAGCA
ACACATACGAAATGTTGTACTCCCACAACCCACACCCACACCCGCACCCG
CACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAGCAGCA
GCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAAGAATC
CGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGCACGCC
TATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGTCCACC
CATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAGGACAC
AGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGCATCAG
CAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCGGCAGT
GGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGTGTGTG
CCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCTCATCG
ACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCATCCTA
CTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACCATATC
AGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCACATCAT
CATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCATCATAC
ACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCCATCGG
CGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCTGAGCGAGA
GATCGTAGATAGAATAGATCGTAGACAGATGAAGATGAATGGGGCGAGCA
ACTCAAGCCCCACATTGTACATTCGAGTTTCTAGTTTGTTAAGCTATTTA
TTAAACGACGAAAGGAATATAACAATACCTATTTAGATGATGAGAGCTCC
AAACATTTTTTTTGCGCGCCTGTCTGGAGAAGATTAGTGTGTAAGTAGGC
TAACTAAAACAATTTCTGGGCATTATATGCCAACTAAACAATAACCAAGG
GAAACCTTATCGATGATACATGGACTAAAGCTGCTGGGATTTCGTTTGGT
CAAAACAATAACAGCAAAACAACAAGCAAACAAACAACAAACCAACAAAC
ATTTTCAAATGAGAACTCAAAGAACTGATTACATTTTATTATCAAAACAA
ACACACAGAGAGAACAATTAGTTTTCGTTTCTTGATTCGTTCGGAATTAA
TTTTCGTGGTTTAAGAGTCTTTTCTAGAAATATTTACATACATTAACAGA
TATACATGTTATATGCTATACATATGTAATATATAAGTAAAGAGCCAATA
AACTCGTCATATTGTAAGCAAGAAATTAAATTTCTTGCGTTTCAAAACTA
TGCAAAAACTACCAACTACCATAAAAACTAAAAACAAAAACCAAAAAAAA
AAAAAAAAAAAAAAAA

GH23604.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33692-RB 4754 CG33692-RB 2545..4748 1..2203 10965 99.9 Plus
CG33692-RA 4383 CG33692-RA 2174..4377 1..2203 10965 99.9 Plus
CG33691-RC 4186 CG33691-RC 1977..4180 1..2203 10965 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 6770750..6772707 235..2192 9670 99.6 Plus
chrX 22417052 chrX 6770453..6770689 1..236 1135 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6878545..6880513 235..2203 9830 99.9 Plus
X 23542271 X 6878248..6878484 1..236 1135 99.6 Plus
X 23542271 X 12691034..12691093 1144..1085 195 88.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 6886643..6888611 235..2203 9830 99.9 Plus
X 23527363 X 6886346..6886582 1..236 1145 99.5 Plus
X 23527363 X 12699132..12699191 1144..1085 195 88.3 Minus
Blast to na_te.dros performed 2019-03-16 23:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 5690..5766 2026..2105 139 72 Plus

GH23604.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:29:59 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 6770453..6770688 1..235 99 -> Plus
chrX 6770751..6770932 236..417 99 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:08 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RC 1..783 762..1544 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:09 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RC 1..783 762..1544 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:53 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG43736-RF 2143..3687 1..1544 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:59 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RC 1..783 762..1544 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:50 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG43736-RF 2143..3687 1..1544 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:07 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RC 1..2173 1..2172 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:09 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG33691-RC 1977..4149 1..2172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:53 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG43736-RF 2545..4717 1..2172 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:00 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RA 2174..4346 1..2172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:50 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
CG43736-RG 2263..4435 1..2172 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:59 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
X 6878248..6878483 1..235 99 -> Plus
X 6878546..6880482 236..2172 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:59 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
X 6878248..6878483 1..235 99 -> Plus
X 6878546..6880482 236..2172 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:59 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
X 6878248..6878483 1..235 99 -> Plus
X 6878546..6880482 236..2172 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:53 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6772281..6772516 1..235 99 -> Plus
arm_X 6772579..6774515 236..2172 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:46 Download gff for GH23604.complete
Subject Subject Range Query Range Percent Splice Strand
X 6886346..6886581 1..235 99 -> Plus
X 6886644..6888580 236..2172 100   Plus

GH23604.hyp Sequence

Translation from 761 to 1543

> GH23604.hyp
MLYSHNPHPHPHPHHPAAQQHHHQQQHEQQRLLKKRQHAEQTAAKNPRAA
AAAAQKMAEVEHAYLSNLYGKAAASMLSPPMGNVMPEWEQQRQRRTQAAA
PTPPHQPQQHPHQQQQTQQQQQQPAAAAAVAAPPQRHIMHRRHSVCAAGL
ASLSPASSTHSSSTASPTTAAAAALAAASYYGSAAAAAAAAFTAPYQHHH
HHHAAAAAAAAHHHAAAAAAAAAAAAAHHTHGQPSPTIYPPTPPPSAPWV
HPWYAGDAAF*

GH23604.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG43736-PG 1143 CG43736-PG 884..1143 1..260 1399 100 Plus
CG43736-PF 1228 CG43736-PF 969..1228 1..260 1399 100 Plus
A2bp1-PF 763 CG32062-PF 496..719 9..241 231 36 Plus
A2bp1-PL 858 CG32062-PL 513..736 9..241 231 36 Plus
A2bp1-PE 865 CG32062-PE 496..719 9..241 231 36 Plus

GH23604.pep Sequence

Translation from 761 to 1543

> GH23604.pep
MLYSHNPHPHPHPHHPAAQQHHHQQQHEQQRLLKKRQHAEQTAAKNPRAA
AAAAQKMAEVEHAYLSNLYGKAAASMLSPPMGNVMPEWEQQRQRRTQAAA
PTPPHQPQQHPHQQQQTQQQQQQPAAAAAVAAPPQRHIMHRRHSVCAAGL
ASLSPASSTHSSSTASPTTAAAAALAAASYYGSAAAAAAAAFTAPYQHHH
HHHAAAAAAAAHHHAAAAAAAAAAAAAHHTHGQPSPTIYPPTPPPSAPWV
HPWYAGDAAF*

GH23604.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20865-PA 307 GF20865-PA 27..133 34..149 201 54.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19620-PA 249 GG19620-PA 25..249 31..260 380 88.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG43736-PG 1143 CG43736-PG 884..1143 1..260 1399 100 Plus
CG43736-PF 1228 CG43736-PF 969..1228 1..260 1399 100 Plus
Rbfox1-PF 763 CG32062-PF 496..719 9..241 231 36 Plus
Rbfox1-PL 858 CG32062-PL 513..736 9..241 231 36 Plus
Rbfox1-PE 865 CG32062-PE 496..719 9..241 231 36 Plus
Rbfox1-PJ 889 CG32062-PJ 562..785 9..241 231 36 Plus
Rbfox1-PK 921 CG32062-PK 576..799 9..241 231 36 Plus
Rbfox1-PH 962 CG32062-PH 593..816 9..241 231 36 Plus
org-1-PB 699 CG11202-PB 404..649 14..232 185 28.3 Plus
org-1-PA 699 CG11202-PA 404..649 14..232 185 28.3 Plus
SoxN-PB 761 CG18024-PB 528..707 5..203 185 32.1 Plus
btd-PA 644 CG12653-PA 37..256 2..257 169 28.2 Plus
ctrip-PK 3111 CG42574-PK 491..738 18..259 169 28.6 Plus
ctrip-PF 3139 CG42574-PF 491..738 18..259 169 28.6 Plus
ctrip-PA 3140 CG17735-PB 491..738 18..259 169 28.6 Plus
ctrip-PB 3140 CG42574-PB 491..738 18..259 169 28.6 Plus
cpo-PY 606 CG43738-PY 155..389 4..235 168 30.3 Plus
cpo-PX 606 CG43738-PX 155..389 4..235 168 30.3 Plus
cpo-PW 606 CG43738-PW 155..389 4..235 168 30.3 Plus
cpo-PU 606 CG43738-PU 155..389 4..235 168 30.3 Plus
cpo-PN 606 CG43738-PN 155..389 4..235 168 30.3 Plus
cpo-PV 607 CG43738-PV 155..389 4..235 168 30.3 Plus
cpo-PT 607 CG43738-PT 155..389 4..235 168 30.3 Plus
cpo-PO 748 CG43738-PO 155..389 4..235 168 30.3 Plus
cpo-PR 749 CG43738-PR 155..389 4..235 168 30.3 Plus
cpo-PQ 762 CG43738-PQ 155..389 4..235 168 30.3 Plus
cpo-PP 841 CG43738-PP 155..389 4..235 168 30.3 Plus
cpo-PS 962 CG43738-PS 155..389 4..235 168 30.3 Plus
pnr-PD 488 CG3978-PD 264..425 60..221 165 32.8 Plus
pnr-PB 488 CG3978-PB 264..425 60..221 165 32.8 Plus
pnr-PC 537 CG3978-PC 313..474 60..221 165 32.8 Plus
pnr-PA 540 CG3978-PA 316..477 60..221 165 32.8 Plus
CG15322-PC 740 CG15322-PC 356..542 19..214 161 30.5 Plus
CG15322-PB 740 CG15322-PB 356..542 19..214 161 30.5 Plus
Vsx1-PB 837 CG4136-PB 570..740 3..189 161 28.7 Plus
Vsx1-PA 837 CG4136-PA 570..740 3..189 161 28.7 Plus
CG32532-PD 688 CG32532-PD 104..292 14..200 160 29.5 Plus
rdx-PE 829 CG12537-PE 25..231 19..231 160 30.5 Plus
grn-PB 699 CG9656-PB 178..399 8..231 159 25.4 Plus
grn-PC 712 CG9656-PC 178..399 8..231 159 25.4 Plus
jim-PF 938 CG11352-PF 661..903 8..256 159 26.9 Plus
nocte-PD 2305 CG17255-PD 1588..1842 5..248 159 25.3 Plus
nocte-PB 2309 CG17255-PB 1588..1842 5..248 159 25.3 Plus
nocte-PA 2309 CG17255-PA 1588..1842 5..248 159 25.3 Plus
nocte-PC 2309 CG17255-PC 1588..1842 5..248 159 25.3 Plus
Smr-PF 3601 CG4013-PF 107..309 5..203 158 27.3 Plus
Smr-PE 3601 CG4013-PE 107..309 5..203 158 27.3 Plus
Smr-PD 3601 CG4013-PD 107..309 5..203 158 27.3 Plus
Smr-PF 3601 CG4013-PF 207..398 6..165 156 30.6 Plus
Smr-PE 3601 CG4013-PE 207..398 6..165 156 30.6 Plus
Smr-PD 3601 CG4013-PD 207..398 6..165 156 30.6 Plus
Smr-PG 3607 CG4013-PG 213..404 6..165 156 30.6 Plus
pnr-PD 488 CG3978-PD 293..425 106..223 155 36.1 Plus
pnr-PB 488 CG3978-PB 293..425 106..223 155 36.1 Plus
pnr-PC 537 CG3978-PC 342..474 106..223 155 36.1 Plus
pnr-PA 540 CG3978-PA 345..477 106..223 155 36.1 Plus
srp-PB 1249 CG3992-PB 411..602 5..184 155 27.3 Plus
srp-PA 1264 CG3992-PA 411..602 5..184 155 27.3 Plus
Smr-PF 3601 CG4013-PF 134..307 19..244 154 29.6 Plus
Smr-PE 3601 CG4013-PE 134..307 19..244 154 29.6 Plus
Smr-PD 3601 CG4013-PD 134..307 19..244 154 29.6 Plus
Vsx1-PB 837 CG4136-PB 61..326 19..233 153 27.9 Plus
Vsx1-PA 837 CG4136-PA 61..326 19..233 153 27.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13404-PA 315 GL13404-PA 48..315 31..260 199 60.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22857-PA 310 GA22857-PA 43..310 31..260 199 60.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12543-PA 220 GM12543-PA 8..220 45..260 354 91.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16822-PA 260 GD16822-PA 1..255 1..260 1139 95.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18855-PA 297 GK18855-PA 42..296 31..258 182 53.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15690-PA 261 GE15690-PA 34..261 28..260 439 88 Plus