Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH23604.complete Sequence
2216 bp (2216 high quality bases) assembled on 2001-07-04
GenBank Submission: AY060337
> GH23604.complete
CGGCTGTGCGTCATACCCGAAATACCCACCAACAACATGAACCTGACGCC
CTACAAGGTGCTCAAGGTTGCGTGGACAAGCATCTGGTGCCCTGCATCAA
CATGAAGGCCTACAACGAATCCGAACAGCTGATGACGCTCATCGAGTTCC
AGAAGAACTTCTTCCCCTCAGTGCCGCTGGATCATTGCAAGCGATTGATC
GAGGCCCTCGGCGTGGAGCTCTACAAGGCAAATCGGCGACAAGTGCAGAT
CCTGATGGAGTACGATCGCAACTACAACGAAAACATGCCACTGGTGCAAG
TGCGCGACATCATCAAGTACATGACACAGCTGACCTTTATGACGCGCCAG
TCGGAGCAGCCGCCAGCTAAGAGGACGCGCACGAGCTAGGAATTAAGCTG
GGGAGCACAACATTTGCCACCAACAACAACCACAATAGCCACAGGCACAG
GCACACCAACAACACCACCGTTAAGCACAGCAGCCACAACAAGCAGCCAC
ACAACTGCCACAGTTCTCACACGAACAACAACTGCGGCGTCCGCAGCGAT
AGCACCACCAACTTCGGTGGCAGCCACATCGTTGAGGAGACGGGCGCTCA
CACCGCCAGCGAATGTTAGTGGTGATGAAGTGCTGGCCAGGCGGAGGGCA
CTAGCGCCACCGCCAGCTCCGGCAGTTCCAGCCACACCACCCGGAGCGGG
AACCATTGGATCTCCTGCACTATCAGCAACACCTGTACACACCACCAGCA
ACACATACGAAATGTTGTACTCCCACAACCCACACCCACACCCGCACCCG
CACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAGCAGCA
GCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAAGAATC
CGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGCACGCC
TATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGTCCACC
CATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAGGACAC
AGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGCATCAG
CAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCGGCAGT
GGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGTGTGTG
CCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCTCATCG
ACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCATCCTA
CTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACCATATC
AGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCACATCAT
CATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCATCATAC
ACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCCATCGG
CGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCTGAGCGAGA
GATCGTAGATAGAATAGATCGTAGACAGATGAAGATGAATGGGGCGAGCA
ACTCAAGCCCCACATTGTACATTCGAGTTTCTAGTTTGTTAAGCTATTTA
TTAAACGACGAAAGGAATATAACAATACCTATTTAGATGATGAGAGCTCC
AAACATTTTTTTTGCGCGCCTGTCTGGAGAAGATTAGTGTGTAAGTAGGC
TAACTAAAACAATTTCTGGGCATTATATGCCAACTAAACAATAACCAAGG
GAAACCTTATCGATGATACATGGACTAAAGCTGCTGGGATTTCGTTTGGT
CAAAACAATAACAGCAAAACAACAAGCAAACAAACAACAAACCAACAAAC
ATTTTCAAATGAGAACTCAAAGAACTGATTACATTTTATTATCAAAACAA
ACACACAGAGAGAACAATTAGTTTTCGTTTCTTGATTCGTTCGGAATTAA
TTTTCGTGGTTTAAGAGTCTTTTCTAGAAATATTTACATACATTAACAGA
TATACATGTTATATGCTATACATATGTAATATATAAGTAAAGAGCCAATA
AACTCGTCATATTGTAAGCAAGAAATTAAATTTCTTGCGTTTCAAAACTA
TGCAAAAACTACCAACTACCATAAAAACTAAAAACAAAAACCAAAAAAAA
AAAAAAAAAAAAAAAA
GH23604.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33692-RB | 4754 | CG33692-RB | 2545..4748 | 1..2203 | 10965 | 99.9 | Plus |
CG33692-RA | 4383 | CG33692-RA | 2174..4377 | 1..2203 | 10965 | 99.9 | Plus |
CG33691-RC | 4186 | CG33691-RC | 1977..4180 | 1..2203 | 10965 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 6770750..6772707 | 235..2192 | 9670 | 99.6 | Plus |
chrX | 22417052 | chrX | 6770453..6770689 | 1..236 | 1135 | 99.6 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:04:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6878545..6880513 | 235..2203 | 9830 | 99.9 | Plus |
X | 23542271 | X | 6878248..6878484 | 1..236 | 1135 | 99.6 | Plus |
X | 23542271 | X | 12691034..12691093 | 1144..1085 | 195 | 88.3 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 6886643..6888611 | 235..2203 | 9830 | 99.9 | Plus |
X | 23527363 | X | 6886346..6886582 | 1..236 | 1145 | 99.5 | Plus |
X | 23527363 | X | 12699132..12699191 | 1144..1085 | 195 | 88.3 | Minus |
Blast to na_te.dros performed 2019-03-16 23:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 5690..5766 | 2026..2105 | 139 | 72 | Plus |
GH23604.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:29:59 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 6770453..6770688 | 1..235 | 99 | -> | Plus |
chrX | 6770751..6770932 | 236..417 | 99 | == | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:08 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 1..783 | 762..1544 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:09 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 1..783 | 762..1544 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:43:53 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 2143..3687 | 1..1544 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:59 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 1..783 | 762..1544 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:50 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 2143..3687 | 1..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:07 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 1..2173 | 1..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:09 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33691-RC | 1977..4149 | 1..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:53 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 2545..4717 | 1..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:00 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RA | 2174..4346 | 1..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:50 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RG | 2263..4435 | 1..2172 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:59 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6878248..6878483 | 1..235 | 99 | -> | Plus |
X | 6878546..6880482 | 236..2172 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:59 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6878248..6878483 | 1..235 | 99 | -> | Plus |
X | 6878546..6880482 | 236..2172 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:59 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6878248..6878483 | 1..235 | 99 | -> | Plus |
X | 6878546..6880482 | 236..2172 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:53 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6772281..6772516 | 1..235 | 99 | -> | Plus |
arm_X | 6772579..6774515 | 236..2172 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:46 Download gff for
GH23604.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6886346..6886581 | 1..235 | 99 | -> | Plus |
X | 6886644..6888580 | 236..2172 | 100 | | Plus |
GH23604.hyp Sequence
Translation from 761 to 1543
> GH23604.hyp
MLYSHNPHPHPHPHHPAAQQHHHQQQHEQQRLLKKRQHAEQTAAKNPRAA
AAAAQKMAEVEHAYLSNLYGKAAASMLSPPMGNVMPEWEQQRQRRTQAAA
PTPPHQPQQHPHQQQQTQQQQQQPAAAAAVAAPPQRHIMHRRHSVCAAGL
ASLSPASSTHSSSTASPTTAAAAALAAASYYGSAAAAAAAAFTAPYQHHH
HHHAAAAAAAAHHHAAAAAAAAAAAAAHHTHGQPSPTIYPPTPPPSAPWV
HPWYAGDAAF*
GH23604.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-PG | 1143 | CG43736-PG | 884..1143 | 1..260 | 1399 | 100 | Plus |
CG43736-PF | 1228 | CG43736-PF | 969..1228 | 1..260 | 1399 | 100 | Plus |
A2bp1-PF | 763 | CG32062-PF | 496..719 | 9..241 | 231 | 36 | Plus |
A2bp1-PL | 858 | CG32062-PL | 513..736 | 9..241 | 231 | 36 | Plus |
A2bp1-PE | 865 | CG32062-PE | 496..719 | 9..241 | 231 | 36 | Plus |
GH23604.pep Sequence
Translation from 761 to 1543
> GH23604.pep
MLYSHNPHPHPHPHHPAAQQHHHQQQHEQQRLLKKRQHAEQTAAKNPRAA
AAAAQKMAEVEHAYLSNLYGKAAASMLSPPMGNVMPEWEQQRQRRTQAAA
PTPPHQPQQHPHQQQQTQQQQQQPAAAAAVAAPPQRHIMHRRHSVCAAGL
ASLSPASSTHSSSTASPTTAAAAALAAASYYGSAAAAAAAAFTAPYQHHH
HHHAAAAAAAAHHHAAAAAAAAAAAAAHHTHGQPSPTIYPPTPPPSAPWV
HPWYAGDAAF*
GH23604.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF20865-PA | 307 | GF20865-PA | 27..133 | 34..149 | 201 | 54.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19620-PA | 249 | GG19620-PA | 25..249 | 31..260 | 380 | 88.3 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-PG | 1143 | CG43736-PG | 884..1143 | 1..260 | 1399 | 100 | Plus |
CG43736-PF | 1228 | CG43736-PF | 969..1228 | 1..260 | 1399 | 100 | Plus |
Rbfox1-PF | 763 | CG32062-PF | 496..719 | 9..241 | 231 | 36 | Plus |
Rbfox1-PL | 858 | CG32062-PL | 513..736 | 9..241 | 231 | 36 | Plus |
Rbfox1-PE | 865 | CG32062-PE | 496..719 | 9..241 | 231 | 36 | Plus |
Rbfox1-PJ | 889 | CG32062-PJ | 562..785 | 9..241 | 231 | 36 | Plus |
Rbfox1-PK | 921 | CG32062-PK | 576..799 | 9..241 | 231 | 36 | Plus |
Rbfox1-PH | 962 | CG32062-PH | 593..816 | 9..241 | 231 | 36 | Plus |
org-1-PB | 699 | CG11202-PB | 404..649 | 14..232 | 185 | 28.3 | Plus |
org-1-PA | 699 | CG11202-PA | 404..649 | 14..232 | 185 | 28.3 | Plus |
SoxN-PB | 761 | CG18024-PB | 528..707 | 5..203 | 185 | 32.1 | Plus |
btd-PA | 644 | CG12653-PA | 37..256 | 2..257 | 169 | 28.2 | Plus |
ctrip-PK | 3111 | CG42574-PK | 491..738 | 18..259 | 169 | 28.6 | Plus |
ctrip-PF | 3139 | CG42574-PF | 491..738 | 18..259 | 169 | 28.6 | Plus |
ctrip-PA | 3140 | CG17735-PB | 491..738 | 18..259 | 169 | 28.6 | Plus |
ctrip-PB | 3140 | CG42574-PB | 491..738 | 18..259 | 169 | 28.6 | Plus |
cpo-PY | 606 | CG43738-PY | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PX | 606 | CG43738-PX | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PW | 606 | CG43738-PW | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PU | 606 | CG43738-PU | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PN | 606 | CG43738-PN | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PV | 607 | CG43738-PV | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PT | 607 | CG43738-PT | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PO | 748 | CG43738-PO | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PR | 749 | CG43738-PR | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PQ | 762 | CG43738-PQ | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PP | 841 | CG43738-PP | 155..389 | 4..235 | 168 | 30.3 | Plus |
cpo-PS | 962 | CG43738-PS | 155..389 | 4..235 | 168 | 30.3 | Plus |
pnr-PD | 488 | CG3978-PD | 264..425 | 60..221 | 165 | 32.8 | Plus |
pnr-PB | 488 | CG3978-PB | 264..425 | 60..221 | 165 | 32.8 | Plus |
pnr-PC | 537 | CG3978-PC | 313..474 | 60..221 | 165 | 32.8 | Plus |
pnr-PA | 540 | CG3978-PA | 316..477 | 60..221 | 165 | 32.8 | Plus |
CG15322-PC | 740 | CG15322-PC | 356..542 | 19..214 | 161 | 30.5 | Plus |
CG15322-PB | 740 | CG15322-PB | 356..542 | 19..214 | 161 | 30.5 | Plus |
Vsx1-PB | 837 | CG4136-PB | 570..740 | 3..189 | 161 | 28.7 | Plus |
Vsx1-PA | 837 | CG4136-PA | 570..740 | 3..189 | 161 | 28.7 | Plus |
CG32532-PD | 688 | CG32532-PD | 104..292 | 14..200 | 160 | 29.5 | Plus |
rdx-PE | 829 | CG12537-PE | 25..231 | 19..231 | 160 | 30.5 | Plus |
grn-PB | 699 | CG9656-PB | 178..399 | 8..231 | 159 | 25.4 | Plus |
grn-PC | 712 | CG9656-PC | 178..399 | 8..231 | 159 | 25.4 | Plus |
jim-PF | 938 | CG11352-PF | 661..903 | 8..256 | 159 | 26.9 | Plus |
nocte-PD | 2305 | CG17255-PD | 1588..1842 | 5..248 | 159 | 25.3 | Plus |
nocte-PB | 2309 | CG17255-PB | 1588..1842 | 5..248 | 159 | 25.3 | Plus |
nocte-PA | 2309 | CG17255-PA | 1588..1842 | 5..248 | 159 | 25.3 | Plus |
nocte-PC | 2309 | CG17255-PC | 1588..1842 | 5..248 | 159 | 25.3 | Plus |
Smr-PF | 3601 | CG4013-PF | 107..309 | 5..203 | 158 | 27.3 | Plus |
Smr-PE | 3601 | CG4013-PE | 107..309 | 5..203 | 158 | 27.3 | Plus |
Smr-PD | 3601 | CG4013-PD | 107..309 | 5..203 | 158 | 27.3 | Plus |
Smr-PF | 3601 | CG4013-PF | 207..398 | 6..165 | 156 | 30.6 | Plus |
Smr-PE | 3601 | CG4013-PE | 207..398 | 6..165 | 156 | 30.6 | Plus |
Smr-PD | 3601 | CG4013-PD | 207..398 | 6..165 | 156 | 30.6 | Plus |
Smr-PG | 3607 | CG4013-PG | 213..404 | 6..165 | 156 | 30.6 | Plus |
pnr-PD | 488 | CG3978-PD | 293..425 | 106..223 | 155 | 36.1 | Plus |
pnr-PB | 488 | CG3978-PB | 293..425 | 106..223 | 155 | 36.1 | Plus |
pnr-PC | 537 | CG3978-PC | 342..474 | 106..223 | 155 | 36.1 | Plus |
pnr-PA | 540 | CG3978-PA | 345..477 | 106..223 | 155 | 36.1 | Plus |
srp-PB | 1249 | CG3992-PB | 411..602 | 5..184 | 155 | 27.3 | Plus |
srp-PA | 1264 | CG3992-PA | 411..602 | 5..184 | 155 | 27.3 | Plus |
Smr-PF | 3601 | CG4013-PF | 134..307 | 19..244 | 154 | 29.6 | Plus |
Smr-PE | 3601 | CG4013-PE | 134..307 | 19..244 | 154 | 29.6 | Plus |
Smr-PD | 3601 | CG4013-PD | 134..307 | 19..244 | 154 | 29.6 | Plus |
Vsx1-PB | 837 | CG4136-PB | 61..326 | 19..233 | 153 | 27.9 | Plus |
Vsx1-PA | 837 | CG4136-PA | 61..326 | 19..233 | 153 | 27.9 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL13404-PA | 315 | GL13404-PA | 48..315 | 31..260 | 199 | 60.4 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA22857-PA | 310 | GA22857-PA | 43..310 | 31..260 | 199 | 60.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM12543-PA | 220 | GM12543-PA | 8..220 | 45..260 | 354 | 91.7 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD16822-PA | 260 | GD16822-PA | 1..255 | 1..260 | 1139 | 95.4 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK18855-PA | 297 | GK18855-PA | 42..296 | 31..258 | 182 | 53.8 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE15690-PA | 261 | GE15690-PA | 34..261 | 28..260 | 439 | 88 | Plus |