Clone GH23636 Report

Search the DGRC for GH23636

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:236
Well:36
Vector:pOT2
Associated Gene/TranscriptCG4848-RA
Protein status:GH23636.pep: gold
Preliminary Size:3008
Sequenced Size:2898

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4848 2001-01-01 Release 2 assignment
CG4848 2001-09-19 Blastp of sequenced clone
CG4848 2003-01-01 Sim4 clustering to Release 3
CG4848 2008-04-29 Release 5.5 accounting
CG4848 2008-08-15 Release 5.9 accounting
CG4848 2008-12-18 5.12 accounting

Clone Sequence Records

GH23636.complete Sequence

2898 bp (2898 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058448

> GH23636.complete
TTATTGTTTTCTTAATTTAAATAAAACTAATTTGACGGCTAAATGACGGC
CAATTTGTTAAACCTGAACGTGGACACGCTGTTTGAGCAGCACAGCGTGT
CCGAGATAGACGAGGTGCACAAAAAGATCCAGTCGGTGGTGGAGAACAAG
CGCGAGGAGTTGCGCACTCATGTCGGGGAGCGGTACCGAGATCTTTTGCA
GGCGGCTGACACCATTGCTGCGATGCAAACGTCGGCCGGGACACTTATGG
AGCAAGTGCGACACGTGCAGGCCAATTGCCGCAGTCTAAACGAGCAGCAG
CTCCTGGGCTTCCAGTCAACTGCCAATGCAAGTGCTAAAGATGCCGCACT
GAAGGAGAGGAACGCCGGAAAAAAGCTGCAGACCTACTACGGCACCATGG
CTCAGATTAAGTTGCTTACTGCCCTGCCGGAACTAATCTGGACGCACTTG
GACAACGATCGCTTCTATGCCGCTACTGAGTTGTTCATCTTCAGTCGCCA
CATCAGCACGGGCTTGCAACTGGACGGCCAGAGTGCCCTGATGCAGAAAC
TACCGGTAGCGCGCAAGCAATGGGAAATCCTGCGTCCCTTTCACGTGACC
ATCAAACAAGCCATACTGACCGCACTGGAGAGGGAGGAACTCCTACAAGA
AATGACTGTGGACTGCCTGCAGAGCCTTCTCTTGCTAGACAAAAGCGATT
TGAGTACTGTGCTGAAATCCTTCTTGAACCTGCGCTCCTCAGCCTTTCTG
AACTGCCTGCAAAGCGGTCCATCGGAGCCACGTCGCGTCAAGGATCGCAT
TTTGGCTAGCTTAAACGTGCTCAACAGCACCGTGGAGCTTCTGGACAAGT
GTCTTTTGGGTTATAGCCTTCTTTTTAGCCGCTTGGAGGAGTGTGCCTCT
TCTACGTGTCCACCCAGCATCAACCGAATGGAGAGTAGCGAGCGCCAGCT
GGTTCATCTTTTACCCGAAATCATCGCTGGTTTTAAGCCACAATTTGATG
TACCTCAGCTAACACCTGAGCAGTTGGGTTCTTCACTTCAACAATGGCTA
GATAAAATGAACGCCTTGGCAGCGGCTCACTTGCAGCAAGTCTTTGCACT
AGTCACCAACATGCAGACCATCCAGGACATTAAGTCCGCGGCCAGAACTA
ATGGTCGACCGGATTTCGTTCGCCTAGAACAGCAATTGCATCTTAAGCGT
AGCCAGTTAGACTTCTACGCCAGAAAGTACGTGCCGTTGATCAACGCCAG
AGTACGAGAGATAATTCGCAGCAGCTGGGCTTCCGCCATGAAGCTGACCT
ACGAACAGGTACTATTGCTTATTGAAGCCGGTCAGTCGCAACCGCCTCTA
CAAATTTGGCGGGAGCAGAGCGATGATTTGCCTTTAAGCTTGGCGGCAGC
ACTCAGCGATCAACCAAAGCGACTGGCAAATCGGACGAAGGGCTATGACG
GCGCAACAATAGAACTGTGTAAACGTTTTGACTCACATCTGGCGGATATC
GTACAGGAGCTGAATGTGATGTTACAAGAACAAACGACGAGGGCTGAGGA
CAAGGTTTCACTTATCGAGTTTCTGCGCGAAACGGCCGAGGAACAGCTGA
CAGAGTATTTATCCAATTTGAAAGGTTTAGAGCTAAGGGAACGCCCTGCT
CTGCTCCTGGCTTTGAGGAATAGTCTCGCCTTGGTCGAGCTGTGCCCCAA
TTTAAAGTTGTGCTTCTGCCAGCCGTCCAGTTGGCGGCAGTGGACTGACA
ACTCGGCGGGATTGGGAATTGAGCATTGGCAGCGCATTTGTGGCCTGATC
GAAAAGGAGATGCTATCCTTTTGGCTGGTCATCGTTGACGATGTGTTGGC
CGGCCACAATTGCGAAGAGAAACTGCCAAAGGTCATTAATCATGAAGTGG
TTCTCAGCGACTTTGCGCTTTGGCAGACCTTGACACTGGAACAGCGCGAC
GAGGACCAGGAGCAGAGTGTTCAGTCAACCATTCGAATCCCCAGTCAGCC
GCGACTCTCTCTGCAGACGTATCTTCATCAGCTAATTCAGGCATTGAATT
CGGTTGTTCCCCAAACTCTGCCACCCAAGGTATTGCAAGCATTCATTCAG
CGGCTCATAGGGAAACTGCTCTGCCACTACGAGGGATTGGCCCACGCGGA
ATGCACCAAAGCCAGTCAGAATATTGCCCTGCAACTATACTTTGATCTTA
AGTTCCTGGAGCGCGTGTTCGCCATTTCACGTGAGGAGAGGACTCTCTAC
GACCAAATCCACGCCCAGCAGAACCAACTGCGCGACTACATAGATCCCTT
TGACTTCGAGCTGTTTGCCGAGCATATAACCGCTCATGTGTCCCGAGCTG
CAAGCCGTCTGCAGGGTGAACTGGGAGTGCTTACTCCCTCGGCAGCTGCT
CCCAGTCAGGGTGCAGCTGCTGCCAGTTCTTTGGCCCATGAAGCAGATCC
CAATGTGCTGTGTCTCAGTTCTTCCGGATCCACGTCGCTGTGGTTCCCGC
TGCTGCCCATTGTGATGCCCCAAGCTGCCGGAAGAGTTACTAGCGCAGAG
CGGAAATCTCCGATCCAAGAGCCAGTTGAGAAAACGGCGACAACGACGCC
GACGAGGAAGTCGGGTGGCAATGGAGCCCGCAAGGGAGACAGCAGCAAAT
CCAAATCGAGCGCAGCTTCCTTCTTTGGGATGTCCCAGGAGTGGTTTCGC
TAGAGGATTCAAATCAAGTGGCCTGTGAAGTGCATTCGAGCGGAATGCGG
ATGGGATGCTCTTCTATTGTTAAGCTTAACCTACATAAATATATCCGAAC
GTACTTGTAGTAGAAGAGGCGGGCAGCGCCCAGTAAATTGTAAGAAAGTC
ACATACATTATAGAGATACTCGTATATACAAAAAAAAAAAAAAAAAAA

GH23636.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4848-RA 3018 CG4848-RA 91..2970 1..2880 14400 100 Plus
CG4848.a 3030 CG4848.a 49..2631 1..2583 12915 100 Plus
CG4848.a 3030 CG4848.a 2686..2982 2584..2880 1485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8042997..8044055 1917..859 5250 99.7 Minus
chr3R 27901430 chr3R 8044121..8044806 861..176 3370 99.4 Minus
chr3R 27901430 chr3R 8042272..8042938 2583..1917 3335 100 Minus
chr3R 27901430 chr3R 8041049..8041344 2879..2584 1480 100 Minus
chr3R 27901430 chr3R 8044861..8045037 177..1 870 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12217606..12218664 1917..859 5295 100 Minus
3R 32079331 3R 12218730..12219415 861..176 3430 100 Minus
3R 32079331 3R 12216881..12217547 2583..1917 3335 100 Minus
3R 32079331 3R 12215657..12215953 2880..2584 1485 100 Minus
3R 32079331 3R 12219470..12219646 177..1 885 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11958437..11959495 1917..859 5295 100 Minus
3R 31820162 3R 11959561..11960246 861..176 3430 100 Minus
3R 31820162 3R 11957712..11958378 2583..1917 3335 100 Minus
3R 31820162 3R 11956488..11956784 2880..2584 1485 100 Minus
3R 31820162 3R 11960301..11960477 177..1 885 100 Minus
Blast to na_te.dros performed on 2019-03-16 00:50:48 has no hits.

GH23636.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:51:33 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8041049..8041344 2584..2879 100 <- Minus
chr3R 8042272..8042937 1918..2583 100 <- Minus
chr3R 8042997..8044054 860..1917 99 <- Minus
chr3R 8044123..8044805 177..859 99 <- Minus
chr3R 8044862..8045037 1..176 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:11 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 1..2661 43..2703 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:33 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 1..2661 43..2703 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:52:37 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 1..2661 43..2703 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:17 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 1..2661 43..2703 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:15:29 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 1..2661 43..2703 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:02 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 45..2923 1..2879 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:32 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 45..2923 1..2879 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:52:37 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 41..2919 1..2879 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:17 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 45..2923 1..2879 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:15:29 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
CG4848-RA 41..2919 1..2879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:51:33 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12219471..12219646 1..176 100   Minus
3R 12215658..12215953 2584..2879 100 <- Minus
3R 12216881..12217546 1918..2583 100 <- Minus
3R 12217606..12218663 860..1917 100 <- Minus
3R 12218732..12219414 177..859 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:51:33 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12219471..12219646 1..176 100   Minus
3R 12215658..12215953 2584..2879 100 <- Minus
3R 12216881..12217546 1918..2583 100 <- Minus
3R 12217606..12218663 860..1917 100 <- Minus
3R 12218732..12219414 177..859 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:51:33 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12219471..12219646 1..176 100   Minus
3R 12215658..12215953 2584..2879 100 <- Minus
3R 12216881..12217546 1918..2583 100 <- Minus
3R 12217606..12218663 860..1917 100 <- Minus
3R 12218732..12219414 177..859 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:52:37 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8041380..8041675 2584..2879 100 <- Minus
arm_3R 8042603..8043268 1918..2583 100 <- Minus
arm_3R 8043328..8044385 860..1917 100 <- Minus
arm_3R 8044454..8045136 177..859 100 <- Minus
arm_3R 8045193..8045368 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:20 Download gff for GH23636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11959563..11960245 177..859 100 <- Minus
3R 11956489..11956784 2584..2879 100 <- Minus
3R 11957712..11958377 1918..2583 100 <- Minus
3R 11958437..11959494 860..1917 100 <- Minus
3R 11960302..11960477 1..176 100   Minus

GH23636.pep Sequence

Translation from 42 to 2702

> GH23636.pep
MTANLLNLNVDTLFEQHSVSEIDEVHKKIQSVVENKREELRTHVGERYRD
LLQAADTIAAMQTSAGTLMEQVRHVQANCRSLNEQQLLGFQSTANASAKD
AALKERNAGKKLQTYYGTMAQIKLLTALPELIWTHLDNDRFYAATELFIF
SRHISTGLQLDGQSALMQKLPVARKQWEILRPFHVTIKQAILTALEREEL
LQEMTVDCLQSLLLLDKSDLSTVLKSFLNLRSSAFLNCLQSGPSEPRRVK
DRILASLNVLNSTVELLDKCLLGYSLLFSRLEECASSTCPPSINRMESSE
RQLVHLLPEIIAGFKPQFDVPQLTPEQLGSSLQQWLDKMNALAAAHLQQV
FALVTNMQTIQDIKSAARTNGRPDFVRLEQQLHLKRSQLDFYARKYVPLI
NARVREIIRSSWASAMKLTYEQVLLLIEAGQSQPPLQIWREQSDDLPLSL
AAALSDQPKRLANRTKGYDGATIELCKRFDSHLADIVQELNVMLQEQTTR
AEDKVSLIEFLRETAEEQLTEYLSNLKGLELRERPALLLALRNSLALVEL
CPNLKLCFCQPSSWRQWTDNSAGLGIEHWQRICGLIEKEMLSFWLVIVDD
VLAGHNCEEKLPKVINHEVVLSDFALWQTLTLEQRDEDQEQSVQSTIRIP
SQPRLSLQTYLHQLIQALNSVVPQTLPPKVLQAFIQRLIGKLLCHYEGLA
HAECTKASQNIALQLYFDLKFLERVFAISREERTLYDQIHAQQNQLRDYI
DPFDFELFAEHITAHVSRAASRLQGELGVLTPSAAAPSQGAAAASSLAHE
ADPNVLCLSSSGSTSLWFPLLPIVMPQAAGRVTSAERKSPIQEPVEKTAT
TTPTRKSGGNGARKGDSSKSKSSAASFFGMSQEWFR*

GH23636.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17740-PA 882 GF17740-PA 1..882 1..886 3812 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17153-PA 886 GG17153-PA 1..886 1..886 4339 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15466-PA 898 GH15466-PA 1..898 1..886 3012 65.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
Cog1-PC 886 CG4848-PC 1..886 1..886 4488 100 Plus
Cog1-PA 886 CG4848-PA 1..886 1..886 4488 100 Plus
Cog1-PB 854 CG4848-PB 1..847 1..847 4287 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22466-PA 884 GI22466-PA 1..884 1..886 3163 69.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21569-PA 889 GL21569-PA 1..889 1..886 3764 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18476-PA 889 GA18476-PA 1..889 1..886 3763 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26035-PA 886 GM26035-PA 1..886 1..886 4548 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20593-PA 543 GD20593-PA 1..506 1..506 2590 97 Plus
Dsim\GD24429-PA 193 GD24429-PA 1..161 689..849 818 95.7 Plus
Dsim\GD20593-PA 543 GD20593-PA 503..543 846..886 155 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10064-PA 896 GJ10064-PA 1..896 1..886 3210 69 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11565-PA 895 GK11565-PA 1..893 1..886 3121 67.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24542-PA 886 GE24542-PA 1..886 1..886 4253 94.6 Plus

GH23636.hyp Sequence

Translation from 42 to 2702

> GH23636.hyp
MTANLLNLNVDTLFEQHSVSEIDEVHKKIQSVVENKREELRTHVGERYRD
LLQAADTIAAMQTSAGTLMEQVRHVQANCRSLNEQQLLGFQSTANASAKD
AALKERNAGKKLQTYYGTMAQIKLLTALPELIWTHLDNDRFYAATELFIF
SRHISTGLQLDGQSALMQKLPVARKQWEILRPFHVTIKQAILTALEREEL
LQEMTVDCLQSLLLLDKSDLSTVLKSFLNLRSSAFLNCLQSGPSEPRRVK
DRILASLNVLNSTVELLDKCLLGYSLLFSRLEECASSTCPPSINRMESSE
RQLVHLLPEIIAGFKPQFDVPQLTPEQLGSSLQQWLDKMNALAAAHLQQV
FALVTNMQTIQDIKSAARTNGRPDFVRLEQQLHLKRSQLDFYARKYVPLI
NARVREIIRSSWASAMKLTYEQVLLLIEAGQSQPPLQIWREQSDDLPLSL
AAALSDQPKRLANRTKGYDGATIELCKRFDSHLADIVQELNVMLQEQTTR
AEDKVSLIEFLRETAEEQLTEYLSNLKGLELRERPALLLALRNSLALVEL
CPNLKLCFCQPSSWRQWTDNSAGLGIEHWQRICGLIEKEMLSFWLVIVDD
VLAGHNCEEKLPKVINHEVVLSDFALWQTLTLEQRDEDQEQSVQSTIRIP
SQPRLSLQTYLHQLIQALNSVVPQTLPPKVLQAFIQRLIGKLLCHYEGLA
HAECTKASQNIALQLYFDLKFLERVFAISREERTLYDQIHAQQNQLRDYI
DPFDFELFAEHITAHVSRAASRLQGELGVLTPSAAAPSQGAAAASSLAHE
ADPNVLCLSSSGSTSLWFPLLPIVMPQAAGRVTSAERKSPIQEPVEKTAT
TTPTRKSGGNGARKGDSSKSKSSAASFFGMSQEWFR*

GH23636.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4848-PC 886 CG4848-PC 1..886 1..886 4488 100 Plus
CG4848-PA 886 CG4848-PA 1..886 1..886 4488 100 Plus
CG4848-PB 854 CG4848-PB 1..847 1..847 4287 100 Plus