Clone GH23641 Report

Search the DGRC for GH23641

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:236
Well:41
Vector:pOT2
Associated Gene/TranscriptCG32833-RA
Protein status:GH23641.pep: validated not full length
Preliminary Size:1183
Sequenced Size:1061

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9898 2001-01-01 Release 2 assignment
CG32833 2001-10-10 Blastp of sequenced clone
CG32833 2008-04-29 Release 5.5 accounting
CG32833 2008-08-15 Release 5.9 accounting
CG32833 2008-12-18 5.12 accounting

Clone Sequence Records

GH23641.complete Sequence

1061 bp (1061 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060772

> GH23641.complete
CGATCTCTACCAATTTTCCTTGCACTCTTTGTCCTTTCCAAAAGTGACAC
GGGTGCAGGTGAAGATTCGGAAGAGGACGACGAAAACGACTGCAACCGGA
CGACTCTTGGTGGTCATCCCGTGAACATAACCACAGCGCCATGGATTGCT
TCCATTTCGATCAAACAAAAGGCCAAGTGCGACGGAGCGATATACAAACT
GAGTCACATTGTGACAGCCGGGAAATGTGTGGATGGATTCCTGAACAAGG
TGATCCGTGTACGAGTGGGTAGCACTACGCGCAGCGATGGAGTCATCGAA
GTAGCAGTCTGCAACATTACAGTTCACGAAAAGTTCACCGGCCAGACAGT
ATTTCACAATGTGGCCATATTAAAGTTGTGCGAACCGCTCGAGGCCTCCA
AAACGATCCAGCCAATTCAGTTGGCCAACCAGCTTCCGTCTAATGGGGCA
AAGGTCACGGCCAACGGGTGGCCCTCCTTCAGGTGGTGGGCAATGTATTG
GAAGAAGTGTCTGGATGATGAAGCCTACAAGCTGCAGAAGGCCGAGGTGA
AGCTACTTGGCCCTAGCCAGTGCACAGATCTGTGGGCGCGAAACAATTGG
TCCAAAAAGAATTTTACAGATGACTTGTTCTGCACCGAGAAGTTCGCTAA
GGAAGCCTGCTCTTTAGCGATGGGATCACCTGTGGTCCACAATGGCAAAC
TGGTCGGCATTATAACGAAAGGCGGCTGTTCGGAGTATCCAGAAGTCTAT
ATCAATCTTATAAAGTACAAGGACTGGCTGCATAATCATACAAAGTAAAC
TTAAGCGTTCTCCCAATTAATTGTTAAAAAATACTTTGCCTTCGAGCTAT
GACTATGTGCAGATTAGTGCAAGTAATACGCAATACTTCCTATTTTGATA
GAGCTTCGAAGTAAAGCCATCACTCAATTTGAGGTATGACTTTGCAGATA
AGGAGCTCTAGCCTTGAAAACGACTTAACTTTTCCTATAAAAAGAGTCGC
ACATGCAGCTCTAAAAATCAGTTGTTTATAATGAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

GH23641.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32833-RA 1049 CG32833-RA 10..1043 1..1034 5170 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18870765..18871797 1033..1 5150 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22984272..22985305 1034..1 5170 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22985471..22986504 1034..1 5170 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:23:55 has no hits.

GH23641.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:24:47 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18870765..18871797 1..1033 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:12 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..807 1..798 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:51:18 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..807 1..798 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:27:30 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..807 1..798 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:20:24 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..807 1..798 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:05:22 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..807 1..798 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:36:08 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..1042 1..1033 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:51:17 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..1042 1..1033 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:30 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 30..1062 1..1033 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:20:24 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 10..1042 1..1033 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:22 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
CG32833-RA 30..1062 1..1033 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:47 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22984273..22985305 1..1033 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:47 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22984273..22985305 1..1033 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:47 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22984273..22985305 1..1033 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:30 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18871796..18872828 1..1033 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:57:06 Download gff for GH23641.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22985490..22986522 1..1033 100   Minus

GH23641.pep Sequence

Translation from 0 to 797

> GH23641.pep
RSLPIFLALFVLSKSDTGAGEDSEEDDENDCNRTTLGGHPVNITTAPWIA
SISIKQKAKCDGAIYKLSHIVTAGKCVDGFLNKVIRVRVGSTTRSDGVIE
VAVCNITVHEKFTGQTVFHNVAILKLCEPLEASKTIQPIQLANQLPSNGA
KVTANGWPSFRWWAMYWKKCLDDEAYKLQKAEVKLLGPSQCTDLWARNNW
SKKNFTDDLFCTEKFAKEACSLAMGSPVVHNGKLVGIITKGGCSEYPEVY
INLIKYKDWLHNHTK*

GH23641.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11312-PA 277 GF11312-PA 31..276 21..265 526 39.1 Plus
Dana\GF11314-PA 297 GF11314-PA 30..258 36..263 396 34.2 Plus
Dana\GF11311-PA 210 GF11311-PA 9..209 52..265 317 36.9 Plus
Dana\GF11310-PA 264 GF11310-PA 56..263 46..264 299 32.9 Plus
Dana\GF15291-PA 246 GF15291-PA 26..241 36..262 278 32.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20080-PA 268 GG20080-PA 16..268 13..265 1007 71.9 Plus
Dere\GG20079-PA 265 GG20079-PA 20..264 32..265 364 35.5 Plus
Dere\GG20082-PA 341 GG20082-PA 22..257 30..265 355 33.8 Plus
Dere\GG24539-PA 247 GG24539-PA 1..245 5..265 287 29.7 Plus
Dere\GG20381-PA 259 GG20381-PA 8..252 6..260 253 27.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22925-PA 254 GH22925-PA 32..254 36..265 265 29.1 Plus
Dgri\GH22924-PA 256 GH22924-PA 32..252 36..263 261 28 Plus
Dgri\GH22926-PA 256 GH22926-PA 32..249 36..260 256 28.8 Plus
Dgri\GH22928-PA 243 GH22928-PA 13..236 36..260 251 28.3 Plus
Dgri\GH22680-PA 258 GH22680-PA 32..251 36..260 245 28.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG32833-PA 268 CG32833-PA 4..268 1..265 1427 100 Plus
CG9897-PA 247 CG9897-PA 24..246 36..265 371 34.6 Plus
CG32834-PB 556 CG32834-PB 22..257 30..265 360 35.3 Plus
Ser12-PA 245 CG17240-PA 25..240 36..262 303 31.6 Plus
CG30025-PA 253 CG30025-PA 32..252 36..263 281 29.4 Plus
gammaTry-PA 253 CG30028-PA 32..249 36..260 277 29.4 Plus
deltaTry-PA 253 CG12351-PA 32..249 36..260 277 29.4 Plus
CG30031-PA 253 CG30031-PA 32..249 36..260 277 29.4 Plus
alphaTry-PA 256 CG18444-PA 32..249 36..260 273 29.4 Plus
iotaTry-PA 252 CG7754-PA 18..245 27..260 265 29.3 Plus
CG17239-PB 248 CG17239-PB 25..237 36..260 261 31.1 Plus
CG17239-PA 248 CG17239-PA 25..237 36..260 261 31.1 Plus
betaTry-PB 253 CG18211-PB 32..252 36..263 253 28 Plus
betaTry-PA 253 CG18211-PA 32..252 36..263 253 28 Plus
CG17571-PB 258 CG17571-PB 32..255 36..264 249 29.1 Plus
CG17571-PA 258 CG17571-PA 32..255 36..264 249 29.1 Plus
CG9897-PB 161 CG9897-PB 24..144 36..156 240 36.4 Plus
CG7829-PA 253 CG7829-PA 29..245 36..260 238 28.9 Plus
Send2-PA 239 CG18125-PA 6..227 6..262 235 28.8 Plus
Ser8-PA 260 CG4812-PA 36..253 36..260 234 27.3 Plus
CG8299-PA 260 CG8299-PA 29..257 36..265 224 26.1 Plus
epsilonTry-PA 256 CG18681-PA 32..249 36..260 221 25.8 Plus
CG32269-PB 332 CG32269-PB 110..327 36..262 219 28.9 Plus
CG32269-PA 332 CG32269-PA 110..327 36..262 219 28.9 Plus
Send1-PA 255 CG17012-PA 31..239 36..260 217 27.3 Plus
thetaTry-PA 262 CG12385-PA 36..257 36..262 215 28.3 Plus
CG16998-PA 258 CG16998-PA 26..244 36..262 210 28.5 Plus
CG32270-PA 259 CG32270-PA 32..251 36..260 207 28.7 Plus
CG17234-PA 251 CG17234-PA 21..245 29..262 203 27.3 Plus
CG32271-PA 248 CG32271-PA 19..235 29..253 202 26.2 Plus
Ser6-PA 259 CG2071-PA 29..257 32..264 199 28.2 Plus
lambdaTry-PA 272 CG12350-PA 37..256 36..260 198 27.4 Plus
CG31681-PA 264 CG31681-PA 30..249 36..260 192 26.5 Plus
CG4914-PA 374 CG4914-PA 121..365 27..265 192 26.1 Plus
kappaTry-PC 263 CG12388-PC 27..253 36..260 191 26.6 Plus
CG31954-PA 277 CG31954-PA 52..275 36..264 189 25.7 Plus
CG18735-PA 364 CG18735-PA 84..316 36..265 188 23.9 Plus
CG31265-PA 266 CG31265-PA 39..256 37..262 186 27.2 Plus
sphe-PA 249 CG9675-PA 27..244 36..260 181 26.3 Plus
CG11836-PI 281 CG11836-PI 46..273 36..263 180 24.6 Plus
CG11836-PJ 333 CG11836-PJ 98..325 36..263 180 24.6 Plus
CG9673-PB 261 CG9673-PB 30..261 36..265 178 28.7 Plus
CG9673-PA 261 CG9673-PA 30..261 36..265 178 28.7 Plus
Try29F-PD 267 CG9564-PD 43..261 36..260 176 25 Plus
Try29F-PC 267 CG9564-PC 43..261 36..260 176 25 Plus
l(2)k05911-PC 639 CG31728-PC 401..639 36..265 176 26.8 Plus
CG4653-PA 254 CG4653-PA 30..252 40..263 173 26.7 Plus
CG32376-PA 291 CG32376-PA 67..284 36..260 170 25.3 Plus
CG9294-PB 352 CG9294-PB 102..338 36..264 169 26.2 Plus
CG1304-PA 260 CG1304-PA 29..257 32..264 168 25.3 Plus
CG3355-PA 314 CG3355-PA 77..306 36..264 168 24.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15880-PA 255 GI15880-PA 31..254 36..265 271 31.5 Plus
Dmoj\GI21245-PA 261 GI21245-PA 3..254 1..260 269 31.2 Plus
Dmoj\GI18353-PA 254 GI18353-PA 32..248 38..260 266 31.2 Plus
Dmoj\GI17437-PA 238 GI17437-PA 12..231 36..260 262 28.4 Plus
Dmoj\GI17438-PA 258 GI17438-PA 34..251 38..260 261 28.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17144-PA 252 GL17144-PA 21..247 29..262 289 30.8 Plus
Dper\GL26041-PA 259 GL26041-PA 4..254 7..262 270 29.4 Plus
Dper\GL17142-PA 256 GL17142-PA 32..251 36..262 247 30.7 Plus
Dper\GL17340-PA 261 GL17340-PA 35..254 36..260 242 29.9 Plus
Dper\GL24187-PA 255 GL24187-PA 30..246 36..260 239 28.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25104-PA 278 GA25104-PA 25..278 36..265 308 31.5 Plus
Dpse\GA20562-PA 252 GA20562-PA 21..247 29..262 289 30.8 Plus
Dpse\GA23343-PA 259 GA23343-PA 4..253 7..261 258 28.7 Plus
Dpse\GA24979-PA 256 GA24979-PA 32..251 36..262 248 30.7 Plus
Dpse\GA24980-PA 256 GA24980-PA 32..249 36..260 243 29.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15595-PA 268 GM15595-PA 16..268 13..265 1199 91.3 Plus
Dsec\GM15596-PA 281 GM15596-PA 22..257 30..265 370 34.3 Plus
Dsec\GM18246-PA 248 GM18246-PA 25..237 36..260 274 30.7 Plus
Dsec\GM15594-PA 164 GM15594-PA 20..144 32..156 246 37.6 Plus
Dsec\GM18245-PA 250 GM18245-PA 28..246 36..264 239 27.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15206-PA 251 GD15206-PA 22..225 30..263 324 32.2 Plus
Dsim\GD22853-PA 245 GD22853-PA 25..243 36..265 296 31.2 Plus
Dsim\GD22852-PA 248 GD22852-PA 25..237 36..260 264 30.3 Plus
Dsim\GD23142-PA 251 GD23142-PA 28..245 36..262 245 29.4 Plus
Dsim\GD22850-PA 255 GD22850-PA 31..239 36..260 243 28.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21575-PA 256 GJ21575-PA 33..248 36..260 288 30.7 Plus
Dvir\GJ22325-PA 340 GJ22325-PA 7..244 9..260 280 31.2 Plus
Dvir\GJ18385-PA 258 GJ18385-PA 32..253 36..262 263 28.4 Plus
Dvir\GJ20754-PA 253 GJ20754-PA 27..248 38..265 259 29.6 Plus
Dvir\GJ18707-PA 252 GJ18707-PA 28..246 36..260 240 32.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19007-PA 261 GK19007-PA 37..254 36..260 253 28 Plus
Dwil\GK19331-PA 263 GK19331-PA 18..260 18..265 248 29.6 Plus
Dwil\GK21995-PA 256 GK21995-PA 32..249 36..260 246 28.4 Plus
Dwil\GK19694-PA 265 GK19694-PA 27..258 32..260 243 27.8 Plus
Dwil\GK19676-PA 244 GK19676-PA 16..239 32..262 241 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11618-PA 268 GE11618-PA 34..268 31..265 1001 76.2 Plus
Dyak\GE11617-PA 267 GE11617-PA 20..266 32..265 389 34.8 Plus
Dyak\GE11619-PA 507 GE11619-PA 20..256 28..264 347 32.8 Plus
Dyak\GE15159-PA 244 GE15159-PA 25..237 36..260 266 28.5 Plus
Dyak\GE15166-PA 244 GE15166-PA 25..242 36..265 260 30.9 Plus

GH23641.hyp Sequence

Translation from 0 to 797

> GH23641.hyp
RSLPIFLALFVLSKSDTGAGEDSEEDDENDCNRTTLGGHPVNITTAPWIA
SISIKQKAKCDGAIYKLSHIVTAGKCVDGFLNKVIRVRVGSTTRSDGVIE
VAVCNITVHEKFTGQTVFHNVAILKLCEPLEASKTIQPIQLANQLPSNGA
KVTANGWPSFRWWAMYWKKCLDDEAYKLQKAEVKLLGPSQCTDLWARNNW
SKKNFTDDLFCTEKFAKEACSLAMGSPVVHNGKLVGIITKGGCSEYPEVY
INLIKYKDWLHNHTK*

GH23641.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32833-PA 268 CG32833-PA 4..268 1..265 1427 100 Plus
CG9897-PA 247 CG9897-PA 24..246 36..265 371 34.6 Plus
CG32834-PB 556 CG32834-PB 22..257 30..265 360 35.3 Plus
Ser12-PA 245 CG17240-PA 25..240 36..262 303 31.6 Plus
CG30025-PA 253 CG30025-PA 32..252 36..263 281 29.4 Plus