Clone GH23708 Report

Search the DGRC for GH23708

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:237
Well:8
Vector:pOT2
Associated Gene/TranscriptSod3-RA
Protein status:GH23708.pep: gold
Preliminary Size:2557
Sequenced Size:2587

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9027 2001-01-01 Release 2 assignment
CG9027 2001-09-19 Blastp of sequenced clone
CG9027 2008-04-29 Release 5.5 accounting
CG9027 2008-08-15 Release 5.9 accounting
CG9027 2008-12-18 5.12 accounting

Clone Sequence Records

GH23708.complete Sequence

2587 bp (2587 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060339

> GH23708.complete
ACGGTACAGAGGTGCAATCGCTTAATTCTCGCAAAAAACAATCAGTACCC
AATTATAAAATAGTTGCTAACAAGGTGAGTTTGCAACGGACGCGAAAAAA
AAGAAGATCAAGGGCTAGTAATCGAGAATATTGGGTGAAGGTTAAGCTGA
AGTTGAAGTTACTTGAGTTAATTGTAATTGTTAATTGTTCATAATTTATT
GGTTTGCTTACATTTTAGAACCTGATTTAGATATATTACCCACAATTGCG
TGTTACCAAAAAGAAACCAGTTACCGCAAAAACGGAGTTTACTTCACTGA
TTTTTGATTCTCTCATTCACTGTCCGCTCACCCTTGAGTGGGTTAAGGTA
ACCAGTTATTAATCCAGAAAAATGAGTGGGCAAAAATGCAGCACAGACCA
GACACAAAATATTGTACATATCCATTACAATCCACACATTCCACGGCTTA
AAACTTCAATAAACATTTAAATTCCCAATCGTGAACAGTTGGTTGAACAA
GTGTTTACGATATTCTATCTTTTCATATATGTAAAATTATGGCTTGTTCT
TATCTCAAAACTGCATAGCTTCGGCGTTTAAATTAGACGCGAAGTCTCTG
TGTGTGAAATCAAGTAATCTTGGCTGTATTGTTTGCAAATTCACGAAGAG
AGCCCTGCGATCAAATTGTTCAGATAAGCATCTTCATTAGCATATCGTTT
CACGGTAAAACTCAAACTGAGTTATTATTTTCAAATCAATCATATTTAAT
CAGCAAGCAAGAGCCCTAATAAACCTTATTTGATGGACAAGCAGTGGCTA
TTAGTTGCAATTTGTGACCCATTTCGTGACAGTTTGAACCAGAATAAGTA
AATACCTGGCAAAAAACAGATTAAAATACTTATACGTAATGACAATGGCA
TTTTTAGTTCCGAAATTCAGTCGCTCTACGAGCGTGAGAATCGTAAATTA
TGGGACCGATTCCAAGTGCAGATAAGGATACGTGTGTAGAGCAGGTACTG
ACCGCGTTTGAAGATCGTTTCAGAACTCGAGCGTGCAAGATCGCCAGCAT
ATCGCAGACACATTGATAAGACCGTAAGGAAACCGGACCCATAAACAAAT
ATTGCCCCGATAAAGTGTGACACCCATCCATTTCATTTGTGGAACTTTGG
AAGCGAAGTGCGTACGAAAAAGAGATTGTTGATTGACCTTCCCGCAGCCG
CACTTAACCCTGTGAAAAAGGCTGTTTGCATTTAGTTTCGTTTGGGTATC
GCTCATTATTCACACACATAAATAATAATACCCGTTCGCACATCATATAT
GACCCACAAATCGTTTCATAAATTGAGGCTAGGCGCTTCAATTCCGCACA
CAACTGTCCGTTTAAATGGAATCAAGAGAATGTACACCTGATGACGTCCA
AGCCAGAGATGAGCTGGAATTCAAGTGCCAGAGATGAGTTGGCATCACGG
AATTTGAGATTACAAGACATAAACCCTCCTAGCATTTCCCAAAACTGAAA
GTATTTGGTTCCAAATCATTTAAAGCTTTACTATAAAGCATTATATAAAT
AGTTTTGGAAGATGTTTTTAATATTGAGTCCATATCAATTATCGAAATTT
CAGGATTATCATTTAGTTCATTTTTAGCTATGTCCAGTAGATCATCCCTG
GTGGGATTTTCTCTGCTTGTGCCACTCAATTTAAAATTATTTATTTATAG
ACATTTAAACATTTCTAACATTTGCTATCCGAGTCGTACACGTGTCTAAT
TTAACTATGATTTCCTTGCAGTTCAAAATGATGCAATATCTTGTTGTTAG
CCTGGCACTCTGTGCCACAATTTGCTCTGCTGCGCAGACGCGCAATATGC
CCATTCAAGCCATTGCCTATCTGATTGGACCCGTGCAATCGGATAATACC
CAGGTCAAGGGCAACGTGACCTTTACGCAGAACGACTGTGGCCAGAATGT
CCATGTGCGCGTCCAGCTGGAGGGATTGAAGGAGGGCAAGCACGGCTTCC
ACATTCACGAGAAGGGAGATCTGACCAATGGATGCATCAGCATGGGTGCT
CACTATAACCCCGATAAGGTTGATCACGGTGGCCCCGATCACGAGGTGCG
TCATGTTGGCGATCTGGGCAACCTGGAGGCCAACTCCACGGGCATTATCG
ACGTTACATACACGGATCAGGTGATCACCTTAACTGGCAAGCTGGGGATC
ATTGGCAGGGGAGTTGTTGTCCACGAATTGGAGGATGATCTCGGTCTGGG
CAACCACACGGATTCCAAGAAGACCGGCAATGCAGGCGGCCGCATTGCCT
GTGGTGTTATTGGCATCAAGTAAATATCCCTTCCAACGTGTCAGCCAAAT
CAATATGCTGCTCGAATACTTTATGTGTAGTTGTGTAACTCCAGGCGTAG
TAACTAATGAAATGTTTTCCCAATTTTCCCAATTCCCCCACCCACAATCA
CACTCACCCTTACATGTTTGGCTTACACATTTCCCTCAATTAATTGTCTC
AGTTCACTGACTCACTCGATTTGCCGTGTGTGTGTTTGTGTGTAATAAAA
TCAACAAAAATTAACCGAAAAAAAAAAAAAAAAAAAA

GH23708.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9027-RC 2635 CG9027-RC 21..2590 1..2570 12850 100 Plus
CG9027.a 1641 CG9027.a 93..1641 1022..2570 7745 100 Plus
CG9027.b 1814 CG9027.b 1..994 1..994 4970 100 Plus
CG9027.b 1814 CG9027.b 1084..1814 1840..2570 3655 100 Plus
CG9027.a 1641 CG9027.a 21..94 1..74 370 100 Plus
CG9027.b 1814 CG9027.b 991..1063 1768..1840 365 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7269691..7271530 1840..1 9035 99.4 Minus
chr2R 21145070 chr2R 7268774..7269044 2567..2297 1340 99.6 Minus
chr2R 21145070 chr2R 7269391..7269625 2074..1840 1160 99.6 Minus
chr2R 21145070 chr2R 7269112..7269342 2297..2067 1110 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11382249..11384088 1840..1 9200 100 Minus
2R 25286936 2R 11381322..11381595 2570..2297 1370 100 Minus
2R 25286936 2R 11381949..11382183 2074..1840 1160 99.6 Minus
2R 25286936 2R 11381663..11381893 2297..2067 1155 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11383448..11385287 1840..1 9200 100 Minus
2R 25260384 2R 11382521..11382794 2570..2297 1370 100 Minus
2R 25260384 2R 11383148..11383382 2074..1840 1160 99.5 Minus
2R 25260384 2R 11382862..11383092 2297..2067 1155 100 Minus
Blast to na_te.dros performed 2019-03-16 15:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 3222..3267 159..204 122 73.9 Plus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2245..2353 2434..2330 119 62.7 Minus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 442..488 159..205 118 72.3 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 1367..1416 552..505 118 76 Minus

GH23708.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:26:42 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7268774..7269043 2298..2567 99 <- Minus
chr2R 7269112..7269340 2069..2297 98 <- Minus
chr2R 7269397..7269624 1841..2068 100 <- Minus
chr2R 7269691..7271530 1..1840 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:14 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1..567 1757..2323 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:35 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1..567 1757..2323 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:44:44 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 1..546 1778..2323 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:19 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1..567 1757..2323 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:45:46 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
Sod3-RB 1..546 1778..2323 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:55:06 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1..2567 1..2567 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:35 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1..2567 1..2567 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 16:44:44 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:19 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9027-RC 1..2567 1..2567 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 11:45:46 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:42 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11381663..11381891 2069..2297 100 <- Minus
2R 11381955..11382182 1841..2068 100 <- Minus
2R 11381325..11381594 2298..2567 100 <- Minus
2R 11382249..11384088 1..1840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:42 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11381663..11381891 2069..2297 100 <- Minus
2R 11381955..11382182 1841..2068 100 <- Minus
2R 11381325..11381594 2298..2567 100 <- Minus
2R 11382249..11384088 1..1840 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:26:42 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11381663..11381891 2069..2297 100 <- Minus
2R 11381955..11382182 1841..2068 100 <- Minus
2R 11381325..11381594 2298..2567 100 <- Minus
2R 11382249..11384088 1..1840 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:44:44 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7268830..7269099 2298..2567 100 <- Minus
arm_2R 7269168..7269396 2069..2297 100 <- Minus
arm_2R 7269460..7269687 1841..2068 100 <- Minus
arm_2R 7269754..7271593 1..1840 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:23 Download gff for GH23708.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11382524..11382793 2298..2567 100 <- Minus
2R 11382862..11383090 2069..2297 100 <- Minus
2R 11383154..11383381 1841..2068 100 <- Minus
2R 11383448..11385287 1..1840 100   Minus

GH23708.pep Sequence

Translation from 1756 to 2322

> GH23708.pep
MISLQFKMMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQV
KGNVTFTQNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHY
NPDKVDHGGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIG
RGVVVHELEDDLGLGNHTDSKKTGNAGGRIACGVIGIK*

GH23708.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12396-PA 210 GF12396-PA 1..173 9..187 760 82.1 Plus
Dana\GF24570-PA 153 GF24570-PA 1..150 31..187 349 51 Plus
Dana\GF18703-PA 124 GF18703-PA 9..121 75..187 288 54.9 Plus
Dana\GF11145-PA 263 GF11145-PA 86..225 46..185 269 44.1 Plus
Dana\GF16781-PA 267 GF16781-PA 94..245 34..187 153 27.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22650-PA 181 GG22650-PA 1..181 8..188 906 95 Plus
Dere\Sod-PA 153 GG13936-PA 10..150 47..187 349 54.6 Plus
Dere\GG25230-PA 264 GG25230-PA 86..226 46..185 249 43.8 Plus
Dere\GG11434-PA 270 GG11434-PA 94..245 34..187 161 29.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20507-PA 181 GH20507-PA 1..181 8..188 784 79 Plus
Dgri\GH11755-PA 181 GH11755-PA 1..181 8..188 761 77.3 Plus
Dgri\GH14640-PA 153 GH14640-PA 10..150 47..187 355 54.6 Plus
Dgri\GH19972-PA 285 GH19972-PA 108..248 46..186 274 46.5 Plus
Dgri\GH22309-PA 256 GH22309-PA 90..240 34..187 175 30.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-PF 181 CG9027-PF 1..181 8..188 960 100 Plus
Sod3-PA 181 CG9027-PA 1..181 8..188 960 100 Plus
Sod3-PB 181 CG9027-PB 1..181 8..188 960 100 Plus
Sod3-PD 217 CG9027-PD 1..180 8..187 955 100 Plus
Sod3-PE 243 CG9027-PE 1..180 8..187 955 100 Plus
Sod1-PA 153 CG11793-PA 10..150 47..187 374 55.3 Plus
Sod1-PD 167 CG11793-PD 30..164 53..187 361 55.6 Plus
Ccs-PC 258 CG17753-PC 80..220 46..185 275 43.8 Plus
Ccs-PB 264 CG17753-PB 86..226 46..185 275 43.8 Plus
CG5948-PB 269 CG5948-PB 93..244 34..187 170 29 Plus
CG5948-PA 270 CG5948-PA 94..245 34..187 170 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21051-PA 181 GI21051-PA 1..181 8..188 786 79 Plus
Dmoj\GI11624-PA 153 GI11624-PA 10..150 47..187 348 54.6 Plus
Dmoj\GI20259-PA 236 GI20259-PA 86..219 46..179 251 44.5 Plus
Dmoj\GI22979-PA 271 GI22979-PA 105..247 44..187 166 27.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10397-PA 277 GL10397-PA 1..180 8..187 822 82.8 Plus
Dper\Sod-PA 152 GL22843-PA 9..149 47..187 350 53.9 Plus
Dper\GL20081-PA 263 GL20081-PA 86..225 46..185 260 42 Plus
Dper\GL21798-PA 267 GL21798-PA 95..246 34..187 164 29.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30465-PA 258 GA30465-PA 1..181 8..188 832 82.9 Plus
Dpse\GA30465-PB 181 GA30465-PB 1..181 8..188 826 82.9 Plus
Dpse\Sod-PA 152 GA11202-PA 9..149 47..187 350 53.9 Plus
Dpse\GA14646-PA 263 GA14646-PA 86..225 46..185 260 42 Plus
Dpse\GA19252-PA 266 GA19252-PA 94..245 34..187 164 29.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20432-PA 181 GM20432-PA 1..181 8..188 931 97.2 Plus
Dsec\Sod-PA 153 GM24771-PA 10..150 47..187 354 55.3 Plus
Dsec\GM20549-PA 264 GM20549-PA 86..226 46..185 249 43.8 Plus
Dsec\GM10274-PA 270 GM10274-PA 94..245 34..187 160 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25903-PA 181 GD25903-PA 1..181 8..188 937 98.3 Plus
Dsim\Sod-PA 153 GD12822-PA 10..150 47..187 354 55.3 Plus
Dsim\GD26004-PA 264 GD26004-PA 86..226 46..185 251 44.4 Plus
Dsim\GD21244-PA 270 GD21244-PA 94..245 34..187 163 30.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21975-PA 181 GJ21975-PA 1..181 8..188 762 76.8 Plus
Dvir\Sod-PA 153 GJ11304-PA 10..150 47..187 353 55.3 Plus
Dvir\GJ20212-PA 263 GJ20212-PA 86..225 46..185 266 44.8 Plus
Dvir\GJ24673-PA 268 GJ24673-PA 94..244 34..187 170 29.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21886-PA 181 GK21886-PA 1..181 8..188 792 80.7 Plus
Dwil\GK13564-PA 157 GK13564-PA 1..154 8..164 615 74.5 Plus
Dwil\Sod-PA 153 GK20556-PA 10..150 47..187 375 56.7 Plus
Dwil\GK23033-PA 252 GK23033-PA 87..215 46..186 176 35.2 Plus
Dwil\GK12866-PA 257 GK12866-PA 98..235 48..185 156 28.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13524-PA 181 GE13524-PA 1..181 8..188 917 95.6 Plus
Dyak\Sod-PA 153 GE20235-PA 10..150 47..187 344 53.9 Plus
Dyak\GE21764-PA 264 GE21764-PA 86..226 46..185 259 44.4 Plus
Dyak\GE23628-PA 270 GE23628-PA 108..245 50..187 158 30.1 Plus

GH23708.hyp Sequence

Translation from 1756 to 2322

> GH23708.hyp
MISLQFKMMQYLVVSLALCATICSAAQTRNMPIQAIAYLIGPVQSDNTQV
KGNVTFTQNDCGQNVHVRVQLEGLKEGKHGFHIHEKGDLTNGCISMGAHY
NPDKVDHGGPDHEVRHVGDLGNLEANSTGIIDVTYTDQVITLTGKLGIIG
RGVVVHELEDDLGLGNHTDSKKTGNAGGRIACGVIGIK*

GH23708.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
Sod3-PA 181 CG9027-PA 1..181 8..188 960 100 Plus
Sod3-PB 181 CG9027-PB 1..181 8..188 960 100 Plus
Sod3-PD 217 CG9027-PD 1..180 8..187 955 100 Plus
Sod3-PE 243 CG9027-PE 1..180 8..187 955 100 Plus
Sod-PA 153 CG11793-PA 10..150 47..187 374 55.3 Plus