Clone GH23727 Report

Search the DGRC for GH23727

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:237
Well:27
Vector:pOT2
Associated Gene/TranscriptCG42575-RA
Protein status:GH23727.pep: gold
Preliminary Size:2888
Sequenced Size:3056

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7628 2001-01-01 Release 2 assignment
CG7628 2001-12-12 Blastp of sequenced clone
CG7628 2003-01-01 Sim4 clustering to Release 3
CG7628 2008-04-29 Release 5.5 accounting
CG7628 2008-08-15 Release 5.9 accounting
CG7628 2008-12-18 5.12 accounting

Clone Sequence Records

GH23727.complete Sequence

3056 bp (3056 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070521

> GH23727.complete
TATGAAAATAACGACAATGAAGTTTAAGCGCAAATATGGCTGTTTAGAGA
ATATTTGAAAAGAATTTCTCACTTATTAATCAATTTGGATTTTTGTTTCG
ACCCTCATTTGTTACGTAGTCTTTGTATTTTATAAGTTTCAAACGATTGT
TTTGCACAACTCAAGTCATCATCCACCCAGTTAAATCCGCACCATACAAT
AAAATACAACTTGAGTTTAGTTTTTCGAGGAGCAAGAAGTGAAATCAGTA
TTTAGTTAGAGTTGAGAGAGTTTAGAGATTGGCTTGAGCCGAAGAGTTTT
GACTAACATTGAACACCGAAAACCAAATTGTCGGCAACAATGGAGAGCTT
TGCGCCGGAATTACTTTGGATGGTAGTCATCGGATTCCTAATCGCCTTCG
TACTCGCCTTTGGCATCGGTGCCAACGACGTGGCCAACTCATTTGGCACC
AGTGTCGGCTCCGGTGTTCTGACCATCCGGCAGGCATGCGTGCTGGCCAC
CATTTGCGAAATTTCGGGTGCCGTTTTGATTGGCTACAAGGTATCGGATA
CCATGCGCAAGGGAATCCTAGAAGTTGGCCTATACGAGGGCGCCGAGGAG
GTTCTGATGCTGGGCTGCGTGGCCGCATTGGCCAGTAGCGCCGTTTGGCT
GCTGGTGGCCACCTTTTTGAAGTTGCCTATTTCGGGAACGCACAGTATCG
TTGGCTCTACCATTGGATTTTCGCTAGTGGCGCGCGGTGTACAGGGCCTA
AAGTGGTCTACTTTGGGCACAATCGTCGGATCGTGGTTCATCTCACCGGT
GCTGAGTGGAATTGTGAGCATTCTGCTCTTCCTGGCCATTCGTCGTTTCA
TCCTACGTGCCCAGGAGCCGCTCAAGGCCGGATTTCGATCGCTGCCCATC
TTCTACGGTGTAACGTTCTTCATCAACGTTATCAGCGTTGTGTTGGACGG
GCCCAAGCTGCTCTACATGGACAACATACCCACTTGGATAGCACTGACCG
CCAGTTTTGGTCTCTCTTTGCTGGTGGCATTGCTTACGCAATTGGTAGTG
GTGCCTTTGCAGCGGCGCAAGATTGCCAAACGATTGCGGGCCGAGAATCC
TGTCAAGTTTAATTTCGAGGACTCCGTGGAATCTTCCCCGTCGGGAAGTC
CCAAGAAGCAGCGTCGTCCCCTGTCGCTGGTTAGCGAAGGAAAGCCACTG
CCTGCCATCGCAGAAATAACCGAGCTGGTCTCGTTGAGCGACAACTCGCC
GAGGACCTTTAAGTTGGCTCCATTCGGATTGGCGGCCAAGAACAACAATG
CGCTTGGGGAGGAGTACAAGATCGATCCGCAGCTGATCAAAAAGGCTGAG
GATCTGCTGGGCAAGGCTAGCCTGGACAACACGGATCTGACGATTACCAG
TCTGAATTTTATCGACGAGCAGCAGCAACAACAGCAGCAGCAGCAAAATG
GACGCAAGTTGCAGGAGTGCTTCAAGCGGATGCAGTCGCCCAAGGAGGAG
CAGAAGAGCAAGACGAACTCCATTGGCACGGACTTGGAAACCGGATCGAC
CAAAGCCACAAATAACAACCTTCAAGTGGTGGAGAGCGGCGGCAGCCTTG
ATCTTATGATCAGTTCCACTTTATCGCCCAATTCCAGCAAGGTTCCTCTG
ATCGAGAGCAAGGAGGCGCTGAATGAGCAGGAGGAGGAGCTGAAACGAAC
GACGGGCGGTGGACGAAGAACCAGTGGCGCCGAGGAGACTCCGGAGATTT
CAATGCTCTTCTCGTTTCTGCAGATCCTGACAGCCACATTTGGCAGTTTT
GCGCACGGCGGCAATGATGTGAGCAACGCCATCGGCCCACTGATTGCCCT
CTATATGATCTATCGCGAGGGATCGGTTATGCAGCAGGCCGAGAGTCCCA
TCTATATTCTGATCTACGGCGGCATCGGCATCTCTGTGGGTCTCTGGCTG
TGGGGACGACGAGTCATCGAGACCATTGGCAATGACCTTACGAAAATAAC
CTCATCGACTGGCTTTACTATTGAAGTCGGAGCTGCCATCACCGTACTGC
TGGCCAGCAAAATTGGCCTGCCCATTTCGACTACTCACTGCAAGGTCGGT
TCGGTGGTTTTTGTGGGTCATGTGAGTGCATCAGGTCGCAAGAAGAAGAG
TCAGCCGAATGATCAGACCGATAAGGAGACCCATAACGAAGTTGCGCCCA
TGGATGATGGCAGTGTCGATTGGCATCTATTCCGGAATATTGCCTATGCA
TGGATCGTAACGGTGCCGGTTACGGCGCTCCTCAGCGCCGGAATGATGTA
CGTGCTGTGTGCCATCGCCGTGGACGACATGGGTGGGGCCTAAAGATGGA
ACAGAGATTGCCATTCAATTATTAATTGTAATTGCAAAACCAAAATAATG
TTTCGTAATTGTACAAGTTGGAAAACACAAAACTTAAATATTAAACACGC
AAAAGGAAACTCAAGAAAAAGTGGTAAAATCTTAACTAAATTACTCGCCT
AACTAAAGCATTGTATTTAGCTCATAGAACGTCTCTGAGTCTAACTGATA
TTAATATTATTTAATATGTGTGTACGCCAAGCAAAGCCGTGATTTGATTT
TATATCTATACACCTCGATTTGATTAGTTTATACCCGAACTTCACATTAC
TTAAAATGCATTTGAGACTCATTTGTAAAGTTAGTCCCAACCACTCAAGT
TATTTTACACCAATTAATAGATCAGAGCAAAACATTTGAATAAAATACAA
ACTATGTGCAACAGAAAATGTTTATACGTTGTGGTAAGACCAATTTTTAT
TTTATATTATCTTTTTTTTTCGTGTCAATTTAAATTGCCGTCTTTATTTA
CAATTCGTACACTTGGTTCCAAGTTCGGTTCGTAACAATTCAAAACCTTA
TGTATAAGGCTCTCCAGTCCGATTTAAATTTACATTCCATTGAGAGTCAG
TTCGTAAAGTATTTCACTATGTAGTTATACGGAAAATAAATACGAAGTTA
TGACACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

GH23727.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG42575-RA 3778 CG42575-RA 738..3752 1..3015 15075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11124540..11125536 2010..3006 4865 99.2 Plus
chr3L 24539361 chr3L 11120826..11121423 532..1129 2975 99.8 Plus
chr3L 24539361 chr3L 11120224..11120755 1..533 2585 99.4 Plus
chr3L 24539361 chr3L 11123966..11124470 1505..2009 2435 98.8 Plus
chr3L 24539361 chr3L 11123520..11123897 1129..1506 1875 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11133667..11134672 2010..3015 5030 100 Plus
3L 28110227 3L 11129952..11130549 532..1129 2990 100 Plus
3L 28110227 3L 11129349..11129881 1..533 2665 100 Plus
3L 28110227 3L 11133093..11133597 1505..2009 2525 100 Plus
3L 28110227 3L 11132647..11133024 1129..1506 1890 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11126767..11127772 2010..3015 5030 100 Plus
3L 28103327 3L 11123052..11123649 532..1129 2990 100 Plus
3L 28103327 3L 11122449..11122981 1..533 2665 100 Plus
3L 28103327 3L 11126193..11126697 1505..2009 2525 100 Plus
3L 28103327 3L 11125747..11126124 1129..1506 1890 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:01:29 has no hits.

GH23727.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:02:20 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11120224..11120754 1..532 99 -> Plus
chr3L 11120827..11121423 533..1129 99 -> Plus
chr3L 11123521..11123897 1130..1506 92 -> Plus
chr3L 11123968..11124470 1507..2009 98 -> Plus
chr3L 11124540..11125536 2010..3006 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:15 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7628-RA 1..2004 340..2343 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:04 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42575-RA 1..2004 340..2343 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:36:09 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42575-RA 1..2004 340..2343 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:11 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7628-RA 1..2004 340..2343 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:49:17 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42575-RA 1..2004 340..2343 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:52:19 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7628-RA 1..3006 1..3006 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:03 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42575-RA 697..3702 1..3006 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:36:09 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42575-RA 710..3715 1..3006 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:11 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG7628-RA 1..3006 1..3006 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:49:17 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42575-RA 710..3715 1..3006 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:20 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11129349..11129880 1..532 100 -> Plus
3L 11129953..11130549 533..1129 100 -> Plus
3L 11132648..11133024 1130..1506 100 -> Plus
3L 11133095..11133597 1507..2009 100 -> Plus
3L 11133667..11134663 2010..3006 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:20 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11129349..11129880 1..532 100 -> Plus
3L 11129953..11130549 533..1129 100 -> Plus
3L 11132648..11133024 1130..1506 100 -> Plus
3L 11133095..11133597 1507..2009 100 -> Plus
3L 11133667..11134663 2010..3006 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:02:20 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11129349..11129880 1..532 100 -> Plus
3L 11129953..11130549 533..1129 100 -> Plus
3L 11132648..11133024 1130..1506 100 -> Plus
3L 11133095..11133597 1507..2009 100 -> Plus
3L 11133667..11134663 2010..3006 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:36:09 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11122449..11122980 1..532 100 -> Plus
arm_3L 11123053..11123649 533..1129 100 -> Plus
arm_3L 11125748..11126124 1130..1506 100 -> Plus
arm_3L 11126195..11126697 1507..2009 100 -> Plus
arm_3L 11126767..11127763 2010..3006 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:21:33 Download gff for GH23727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11122449..11122980 1..532 100 -> Plus
3L 11123053..11123649 533..1129 100 -> Plus
3L 11125748..11126124 1130..1506 100 -> Plus
3L 11126195..11126697 1507..2009 100 -> Plus
3L 11126767..11127763 2010..3006 100   Plus

GH23727.hyp Sequence

Translation from 339 to 2342

> GH23727.hyp
MESFAPELLWMVVIGFLIAFVLAFGIGANDVANSFGTSVGSGVLTIRQAC
VLATICEISGAVLIGYKVSDTMRKGILEVGLYEGAEEVLMLGCVAALASS
AVWLLVATFLKLPISGTHSIVGSTIGFSLVARGVQGLKWSTLGTIVGSWF
ISPVLSGIVSILLFLAIRRFILRAQEPLKAGFRSLPIFYGVTFFINVISV
VLDGPKLLYMDNIPTWIALTASFGLSLLVALLTQLVVVPLQRRKIAKRLR
AENPVKFNFEDSVESSPSGSPKKQRRPLSLVSEGKPLPAIAEITELVSLS
DNSPRTFKLAPFGLAAKNNNALGEEYKIDPQLIKKAEDLLGKASLDNTDL
TITSLNFIDEQQQQQQQQQNGRKLQECFKRMQSPKEEQKSKTNSIGTDLE
TGSTKATNNNLQVVESGGSLDLMISSTLSPNSSKVPLIESKEALNEQEEE
LKRTTGGGRRTSGAEETPEISMLFSFLQILTATFGSFAHGGNDVSNAIGP
LIALYMIYREGSVMQQAESPIYILIYGGIGISVGLWLWGRRVIETIGNDL
TKITSSTGFTIEVGAAITVLLASKIGLPISTTHCKVGSVVFVGHVSASGR
KKKSQPNDQTDKETHNEVAPMDDGSVDWHLFRNIAYAWIVTVPVTALLSA
GMMYVLCAIAVDDMGGA*

GH23727.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG42575-PB 667 CG42575-PB 1..667 1..667 3345 100 Plus
CG42575-PA 667 CG7628-PA 1..667 1..667 3345 100 Plus

GH23727.pep Sequence

Translation from 339 to 2342

> GH23727.pep
MESFAPELLWMVVIGFLIAFVLAFGIGANDVANSFGTSVGSGVLTIRQAC
VLATICEISGAVLIGYKVSDTMRKGILEVGLYEGAEEVLMLGCVAALASS
AVWLLVATFLKLPISGTHSIVGSTIGFSLVARGVQGLKWSTLGTIVGSWF
ISPVLSGIVSILLFLAIRRFILRAQEPLKAGFRSLPIFYGVTFFINVISV
VLDGPKLLYMDNIPTWIALTASFGLSLLVALLTQLVVVPLQRRKIAKRLR
AENPVKFNFEDSVESSPSGSPKKQRRPLSLVSEGKPLPAIAEITELVSLS
DNSPRTFKLAPFGLAAKNNNALGEEYKIDPQLIKKAEDLLGKASLDNTDL
TITSLNFIDEQQQQQQQQQNGRKLQECFKRMQSPKEEQKSKTNSIGTDLE
TGSTKATNNNLQVVESGGSLDLMISSTLSPNSSKVPLIESKEALNEQEEE
LKRTTGGGRRTSGAEETPEISMLFSFLQILTATFGSFAHGGNDVSNAIGP
LIALYMIYREGSVMQQAESPIYILIYGGIGISVGLWLWGRRVIETIGNDL
TKITSSTGFTIEVGAAITVLLASKIGLPISTTHCKVGSVVFVGHVSASGR
KKKSQPNDQTDKETHNEVAPMDDGSVDWHLFRNIAYAWIVTVPVTALLSA
GMMYVLCAIAVDDMGGA*

GH23727.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25245-PA 812 GF25245-PA 400..810 264..665 1826 89.1 Plus
Dana\GF25245-PA 812 GF25245-PA 1..266 1..266 1272 95.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15482-PA 736 GG15482-PA 344..736 274..667 1890 93.7 Plus
Dere\GG15482-PA 736 GG15482-PA 1..263 1..263 1349 99.2 Plus
Dere\GG15483-PA 377 GG15483-PA 1..263 1..263 1329 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16931-PA 676 GH16931-PA 1..674 1..666 2926 85.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
NaPi-III-PB 667 CG42575-PB 1..667 1..667 3345 100 Plus
NaPi-III-PA 667 CG7628-PA 1..667 1..667 3345 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13685-PA 691 GI13685-PA 1..688 1..664 2832 83.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22764-PA 676 GL22764-PA 1..676 1..667 2946 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20490-PA 676 GA20490-PA 1..676 1..667 2984 88.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25253-PA 666 GM25253-PA 1..666 1..667 3409 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:15:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14287-PA 558 GD14287-PA 1..325 1..325 1666 99.4 Plus
Dsim\GD14287-PA 558 GD14287-PA 326..558 434..667 1199 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:15:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14026-PA 681 GJ14026-PA 1..679 1..665 3011 85 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20337-PA 712 GK20337-PA 1..710 1..665 2886 80.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21792-PA 666 GE21792-PA 1..665 1..666 3373 96.7 Plus