Clone GH23732 Report

Search the DGRC for GH23732

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:237
Well:32
Vector:pOT2
Associated Gene/TranscriptHph-RA
Protein status:GH23732.pep: gold
Preliminary Size:1877
Sequenced Size:1763

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1114 2001-01-01 Release 2 assignment
CG31543 2001-07-04 Blastp of sequenced clone
Hph 2008-04-29 Release 5.5 accounting
Hph 2008-08-15 Release 5.9 accounting
Hph 2008-12-18 5.12 accounting

Clone Sequence Records

GH23732.complete Sequence

1763 bp (1763 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051594

> GH23732.complete
AGTCGTTTGAGAACCCGTCATCTCCCAAGAACAGTAATTAACCAATTCAG
GGTATCTAAAAAAGGATCCTGAAACAATTCAAATGCCAAGAACTTAATTC
ACCCTTTCTCTGCACAACAACAACTAATAACTCTGTGGAGATACAAAGAT
AGGACTTCAGTCTTAAAGCTGTCTCAAGAGTAATAGAGTTCTTGTGATAA
CAGTGAGAAGCAAGCTGACTAATCAAGGCAAAATGATAACCTCCACGACC
ACGGACTACAAAAACTTTTTTAAACACTCGGCACATCCTGCCAATGCTGA
GCAGTACTTTCGGGAACTTTTGGACAAGCGTGAGCGCCGCTATGAGGATC
TGTGCCGTAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGTG
GACGACTTCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCG
AAGCATGTACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACC
AGACGCCCGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAG
ATCAAGTGGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCT
GACCAATCAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATA
ATGGCATCTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTC
GCTTGTTATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCC
CCAAAAGGATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACT
GGGATGCGCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGA
ACCACAGTGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTG
GTCTGACATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCT
ATGCCATCACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTC
ATTAGGGCCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGC
CCAAGCCCAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCAC
CAGCTTCATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGA
GCGCTGAACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAAT
ATGCACGTAACCCAAGCCGACAGCGCAGCTAAAGGCAACCAAAAAGTGTA
AATTATTTTCAACCAAACACACATGTATAAAGCTAGTTAAAAACTATTTA
TAGCTTCGGAGGGGCGGCAGCGCAAGCCCGCATTGCGAAAGTTAATCAAA
GCTCCTTTAGTCGTTAAGCCTTCTAGTTTAGTCTCTAAGTCGTACCCTTA
GTCATTTTCGCATTAACCATTAGCTTACTGCCATGTCAGCGTCCGAGTTG
GTTGTTTATTAATTTTAGTTTGTTGCATCTTTGTCAGGACCTTTTGCCTA
GCTCATTCTTAGTTTTTGGCTGCCAAAGTATTATACCTAAAGAGAAGTTA
ACTAGATTCAATAACATAAGCAACTGTCGCGACGCTCATTGCATCTTATC
TCAAAATTATTTAACAAGCCAGTAAATCGTGGACAAACGCGGTCACTGGC
TAACACTCAATCTGTCGACTCTCATGCATCTTGTTAGACATCTTTTTCAT
ATCGTTTACATCTAATAACAAACGGAAATAAATGTTTGTCCAAATAAAAA
AAAAAAAAAAAAA

GH23732.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 2341 Hph-RA 391..2136 1..1746 8730 100 Plus
Hph.b 1584 Hph.b 69..1485 330..1746 7085 100 Plus
Hph-RC 2793 Hph-RC 1172..2588 330..1746 7085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1093125..1094039 831..1745 4575 100 Plus
chr3R 27901430 chr3R 1090972..1091301 1..330 1650 100 Plus
chr3R 27901430 chr3R 1092416..1092696 330..610 1405 100 Plus
chr3R 27901430 chr3R 1092926..1093066 691..831 705 100 Plus
chr3R 27901430 chr3R 1092781..1092866 607..692 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5268376 831..1746 4580 100 Plus
3R 32079331 3R 5265308..5265637 1..330 1650 100 Plus
3R 32079331 3R 5266752..5267032 330..610 1405 100 Plus
3R 32079331 3R 5267262..5267402 691..831 705 100 Plus
3R 32079331 3R 5267117..5267202 607..692 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5008292..5009207 831..1746 4580 100 Plus
3R 31820162 3R 5006139..5006468 1..330 1650 100 Plus
3R 31820162 3R 5007583..5007863 330..610 1405 100 Plus
3R 31820162 3R 5008093..5008233 691..831 705 100 Plus
3R 31820162 3R 5007948..5008033 607..692 430 100 Plus
Blast to na_te.dros performed 2019-03-16 01:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1110..1233 1172..1302 135 60.9 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 5767..5842 1521..1448 122 65.8 Minus

GH23732.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:38:13 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1090972..1091301 1..330 100 -> Plus
chr3R 1092417..1092696 331..610 100 -> Plus
chr3R 1092785..1092865 611..691 100 -> Plus
chr3R 1092927..1093066 692..831 100 -> Plus
chr3R 1093126..1094039 832..1745 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:17 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 1..978 233..1210 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:11 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 1..978 233..1210 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:08:28 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 1..978 233..1210 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:57:03 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 1..978 233..1210 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:37:56 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 1..978 233..1210 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:09 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 367..2111 1..1745 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:10 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 367..2111 1..1745 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:08:28 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 370..2114 1..1745 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:57:03 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 367..2111 1..1745 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:37:56 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 370..2114 1..1745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:13 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5265308..5265637 1..330 100 -> Plus
3R 5266753..5267032 331..610 100 -> Plus
3R 5267121..5267201 611..691 100 -> Plus
3R 5267263..5267402 692..831 100 -> Plus
3R 5267462..5268375 832..1745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:13 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5265308..5265637 1..330 100 -> Plus
3R 5266753..5267032 331..610 100 -> Plus
3R 5267121..5267201 611..691 100 -> Plus
3R 5267263..5267402 692..831 100 -> Plus
3R 5267462..5268375 832..1745 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:38:13 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5265308..5265637 1..330 100 -> Plus
3R 5266753..5267032 331..610 100 -> Plus
3R 5267121..5267201 611..691 100 -> Plus
3R 5267263..5267402 692..831 100 -> Plus
3R 5267462..5268375 832..1745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:08:28 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1091030..1091359 1..330 100 -> Plus
arm_3R 1092475..1092754 331..610 100 -> Plus
arm_3R 1092843..1092923 611..691 100 -> Plus
arm_3R 1092985..1093124 692..831 100 -> Plus
arm_3R 1093184..1094097 832..1745 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:47 Download gff for GH23732.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5006139..5006468 1..330 100 -> Plus
3R 5007584..5007863 331..610 100 -> Plus
3R 5007952..5008032 611..691 100 -> Plus
3R 5008094..5008233 692..831 100 -> Plus
3R 5008293..5009206 832..1745 100   Plus

GH23732.pep Sequence

Translation from 232 to 1209

> GH23732.pep
MITSTTTDYKNFFKHSAHPANAEQYFRELLDKRERRYEDLCRNIISDMNQ
YGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAVRGD
KIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYHIRE
RTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGGILR
IRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYFDAK
EREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSLPVS
MSTGTGALNANVSSNSCATSSEICT*

GH23732.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18932-PA 334 GF18932-PA 1..334 1..325 1486 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12715-PA 325 GG12715-PA 1..325 1..325 1742 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17757-PA 462 GH17757-PA 169..462 34..325 1234 83.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PA 325 CG44015-PA 1..325 1..325 1719 100 Plus
Hph-PD 478 CG44015-PD 187..478 34..325 1543 100 Plus
Hph-PC 478 CG44015-PC 187..478 34..325 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 48..325 1468 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22545-PA 459 GI22545-PA 166..459 34..325 1349 84.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21637-PA 304 GL21637-PA 175..296 34..153 624 94.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16313-PB 347 GA16313-PB 1..347 1..325 1536 87 Plus
Dpse\GA16313-PA 488 GA16313-PA 175..488 34..325 1362 86.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10798-PA 325 GM10798-PA 1..325 1..325 1752 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19772-PA 325 GD19772-PA 1..325 1..325 1761 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10149-PA 473 GJ10149-PA 167..473 34..325 1328 81.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12967-PA 493 GK12967-PA 174..433 34..284 1162 85.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25458-PA 325 GE25458-PA 1..325 1..325 1715 96.9 Plus
Dyak\GE14665-PA 60 GE14665-PA 3..60 268..325 183 82.8 Plus

GH23732.hyp Sequence

Translation from 232 to 1209

> GH23732.hyp
MITSTTTDYKNFFKHSAHPANAEQYFRELLDKRERRYEDLCRNIISDMNQ
YGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAVRGD
KIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYHIRE
RTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGGILR
IRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYFDAK
EREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSLPVS
MSTGTGALNANVSSNSCATSSEICT*

GH23732.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PA 325 CG44015-PA 1..325 1..325 1719 100 Plus
Hph-PD 478 CG44015-PD 187..478 34..325 1543 100 Plus
Hph-PC 478 CG44015-PC 187..478 34..325 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 48..325 1468 100 Plus