Clone GH23743 Report

Search the DGRC for GH23743

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:237
Well:43
Vector:pOT2
Associated Gene/TranscriptNplp1-RA
Protein status:GH23743.pep: gold
Preliminary Size:2045
Sequenced Size:2050

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3441 2001-01-01 Release 2 assignment
CG3441 2001-09-19 Blastp of sequenced clone
CG3441 2003-01-01 Sim4 clustering to Release 3
Nplp1 2008-04-29 Release 5.5 accounting
Nplp1 2008-08-15 Release 5.9 accounting
Nplp1 2008-12-18 5.12 accounting

Clone Sequence Records

GH23743.complete Sequence

2050 bp (2050 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060340

> GH23743.complete
ACGACTTTGCGGCTAACGTTAGTGTTACGGCAGCTGGCAAACGGCAAAGC
TTCGCGTCCGTGTTTCCGTTACGGTTTAAATCGGTTTGGAAGTGGGTGCT
GCAAAAGGGCAGTTCAATTTGTGAGGCAGTGCGAGTGTGGTCGATCCTTT
TGTCGCGTTGCAAACGAACGAAACTCACTTAACAGTTGAGCCGCCCCCAG
GACGACATCCACGATGCAGGCGGTGCTCCAATCTGCGCACAGCAGCAGGC
GGCTAATGCTGTTGCTCTCCATGCTGCTCAATGCCGCTATTCAGCCACGG
TCCATTATTGTGAGTGCTACTGATGATGTCGCCAATGTGTCGCCGTGCGA
AATGGAGTCCCTTATAAATCAACTGATGAGCCCCAGTCCCGAGTACCAGC
TTCACGCCTCCGCATTGCGCAATCAACTGAAAAACTTACTTCGGGAAAGA
CAGTTGGCCGTGGGCGAAGAACAGCCTTTGGGCGAGTACCCCGATTATCT
GGAGGAGGACAAACGTTCGGTGGCCGCACTGGCCGCCCAAGGCCTCCTTA
ACGCTCCGAAGAGAAGCTTGGCCACTCTGGCTAAAAACGGGCAACTGCCC
ACGGCAGAGCCTGGAGAGGATTACGGCGACGCGGACTCCGGAGAACCGAG
TGAACAGAAGCGCTACATCGGCTCCTTGGCCAGGGCCGGCGGATTGATGA
CATATGGAAAGCGCAACGTGGGCACCCTGGCCCGCGACTTCCAGCTGCCT
ATTCCCAACGGCAAGCGAAACATCGCAACTATGGCCCGTCTGCAGAGTGC
TCCCTCCACCCACCGAGATCCAAAGCGCAATGTGGCCGCCGTCGCACGCT
ACAACTCGCAGCACGGTCACATCCAGCGTGCTGGGGCCGAGAAACGTAAC
CTGGGAGCTCTGAAGTCCTCGCCGGTCCACGGAGTGCAGCAGAAGCGCGA
GGATGAAGAGATGCTGTTGCCCGCGGCCGCCCCCGACTACGCCGATCCCA
TGCAGAGCTACTGGTGGTACCCCAGCTACGCCGGGTACGCCGACCTCGAC
TGGAACGATTATCGCCGGGCAGAGAAGCGATTCCTAGGCCGGGTACTTCC
ACCAACACGAGCGACTGCGTCAACCCACCGCAGCCGTTTGTAAGCAGTGT
TTCATACCTAACCAACCGATGATCAATTGGAGTGGTGCTGGCGTACGCGG
TCGTCTGTCCAATTACTATGTGGATCCCGAGTCCTCATTAGCGCGCTTGC
CGAGCCTGTCAAGTAACTCGCTGCCATCAGGACGCCCTCCGCGCCCGCTC
CTGCGCTCAGGGGCTCCAGTCTATCCGCCCTTCCACACCTGGGGCACTCC
GCCGCGTATCACAGCACTGCATCGACGAGAATTTCGACGCAACTCGCAAA
ATTACGAATACTAAATATCGACAATATACTCTTTATGCAAATAACGCGAT
ACAGATTTCCTTAGTACAGAAGTCGGAAAATATACCTATACAGTGTATGT
ATTTAGTGTAAATCCCCCAAATGTAATGTCACACACTACACCTGCGAACC
TTGCGACTACTAAGTCTAGCGCGTAAACCGGAGAGCTGTAGGATCTGTAT
GGCTATTGCTATAACTATCAAATATATTTATGAAACTGAAGTAACTGATA
TCAGTGCAAAGCATAAACACGATATATATCAAAGCAAATCATATCCTCTG
TATAATTTAAATTCTTAAAAGAAGTTTTAAAATAGTGCTAGTGTGGTACC
TTGCAAGAACTTGAACTTCATAAAATATCTTTATCCTTTATTGCTAACTT
ACTGATAACAGTTTAGATTGTTTTCCCTGGCGTCTTTTATGTGTAAATGA
CAATAACTGTTTCCACTAGGTAAAAGCTAAAAGTTGCCATCAACGATCAC
TGATATATGAAAGCGTTAACAAACTGCGTCAAAGACAATAAAACTAAAGA
AAATCTCGATTTATATATATACTTATAAATATATTATACTTTAATGTATT
CAAGACAATAAAAAAATATTGACAATAAAAAAAAAAAAAAAAAAAAAAAA

GH23743.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-RA 2249 Nplp1-RA 102..2131 1..2030 10150 100 Plus
Nplp1.d 2112 Nplp1.d 484..2108 406..2030 8125 100 Plus
Nplp1-RC 2410 Nplp1-RC 16..1102 1..1087 5435 100 Plus
Nplp1-RC 2410 Nplp1-RC 1366..2308 1088..2030 4715 100 Plus
Nplp1.d 2112 Nplp1.d 16..421 1..406 2030 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20924973..20925913 1086..2026 4690 99.9 Plus
chr2R 21145070 chr2R 20922769..20923455 402..1088 3420 99.9 Plus
chr2R 21145070 chr2R 20918319..20918604 1..286 1430 100 Plus
chr2R 21145070 chr2R 20922517..20922637 286..406 605 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25039049..25039993 1086..2030 4725 100 Plus
2R 25286936 2R 25036845..25037531 402..1088 3420 99.9 Plus
2R 25286936 2R 25032395..25032680 1..286 1430 100 Plus
2R 25286936 2R 25036593..25036713 286..406 605 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 25040248..25041192 1086..2030 4725 100 Plus
2R 25260384 2R 25038044..25038730 402..1088 3420 99.8 Plus
2R 25260384 2R 25033594..25033879 1..286 1430 100 Plus
2R 25260384 2R 25037792..25037912 286..406 605 100 Plus
Blast to na_te.dros performed on 2019-03-15 12:03:01 has no hits.

GH23743.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:04:05 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20918319..20918603 1..285 100 -> Plus
chr2R 20922517..20922636 286..405 100 -> Plus
chr2R 20922773..20923454 406..1087 100 -> Plus
chr2R 20924975..20925913 1088..2026 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:19 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 1..930 214..1143 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:16 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 1..930 214..1143 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:36:39 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 1..930 214..1143 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:58 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 1..930 214..1143 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:50:25 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 1..930 214..1143 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:41 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 16..2041 1..2026 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:16 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 16..2041 1..2026 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:36:39 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 19..2044 1..2026 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:58 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 16..2041 1..2026 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:50:25 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
Nplp1-RA 19..2044 1..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:04:05 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032395..25032679 1..285 100 -> Plus
2R 25036593..25036712 286..405 100 -> Plus
2R 25036849..25037530 406..1087 100 -> Plus
2R 25039051..25039989 1088..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:04:05 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032395..25032679 1..285 100 -> Plus
2R 25036593..25036712 286..405 100 -> Plus
2R 25036849..25037530 406..1087 100 -> Plus
2R 25039051..25039989 1088..2026 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:04:05 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25032395..25032679 1..285 100 -> Plus
2R 25036593..25036712 286..405 100 -> Plus
2R 25036849..25037530 406..1087 100 -> Plus
2R 25039051..25039989 1088..2026 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:36:39 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20919918..20920202 1..285 100 -> Plus
arm_2R 20924116..20924235 286..405 100 -> Plus
arm_2R 20924372..20925053 406..1087 100 -> Plus
arm_2R 20926574..20927512 1088..2026 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:00 Download gff for GH23743.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25033612..25033896 1..285 100 -> Plus
2R 25037810..25037929 286..405 100 -> Plus
2R 25038066..25038747 406..1087 100 -> Plus
2R 25040268..25041206 1088..2026 100   Plus

GH23743.pep Sequence

Translation from 213 to 1142

> GH23743.pep
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLGRVLPPTRA
TASTHRSRL*

GH23743.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13360-PA 490 GF13360-PA 1..293 1..291 1307 90.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23029-PA 309 GG23029-PA 1..309 1..309 1592 97.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22656-PA 511 GH22656-PA 1..298 1..291 1126 81.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-PA 309 CG3441-PA 1..309 1..309 1586 100 Plus
Nplp1-PC 487 CG3441-PC 1..291 1..291 1495 100 Plus
Nplp1-PB 380 CG3441-PB 1..291 1..291 1495 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17643-PA 496 GL17643-PA 1..292 1..291 1349 90.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17454-PB 309 GA17454-PB 1..309 1..309 1417 90.3 Plus
Dpse\GA17454-PA 496 GA17454-PA 1..292 1..291 1337 90.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11921-PA 487 GM11921-PA 1..291 1..291 1497 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11917-PA 487 GD11917-PA 1..291 1..291 1505 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21021-PA 495 GJ21021-PA 1..294 1..291 1186 83.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21575-PA 502 GK21575-PA 1..295 1..291 1141 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14463-PA 487 GE14463-PA 1..291 1..291 1493 98.3 Plus

GH23743.hyp Sequence

Translation from 213 to 1142

> GH23743.hyp
MQAVLQSAHSSRRLMLLLSMLLNAAIQPRSIIVSATDDVANVSPCEMESL
INQLMSPSPEYQLHASALRNQLKNLLRERQLAVGEEQPLGEYPDYLEEDK
RSVAALAAQGLLNAPKRSLATLAKNGQLPTAEPGEDYGDADSGEPSEQKR
YIGSLARAGGLMTYGKRNVGTLARDFQLPIPNGKRNIATMARLQSAPSTH
RDPKRNVAAVARYNSQHGHIQRAGAEKRNLGALKSSPVHGVQQKREDEEM
LLPAAAPDYADPMQSYWWYPSYAGYADLDWNDYRRAEKRFLGRVLPPTRA
TASTHRSRL*

GH23743.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp1-PA 309 CG3441-PA 1..309 1..309 1586 100 Plus
Nplp1-PB 380 CG3441-PB 1..291 1..291 1495 100 Plus
Nplp1-PC 487 CG3441-PC 1..291 1..291 1495 100 Plus