Clone GH23746 Report

Search the DGRC for GH23746

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:237
Well:46
Vector:pOT2
Associated Gene/TranscriptCG7656-RD
Protein status:GH23746.pep: gold
Preliminary Size:1359
Sequenced Size:1228

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7656 2004-07-13 Blastp of sequenced clone
CG7656 2008-04-29 Release 5.5 accounting
CG7656 2008-08-15 Release 5.9 accounting
CG7656 2008-12-18 5.12 accounting

Clone Sequence Records

GH23746.complete Sequence

1228 bp (1228 high quality bases) assembled on 2004-07-13

GenBank Submission: BT015283

> GH23746.complete
CTCCATTTAAACATACCTAAATCAAAATATTGACATGTCTCGGCATTTGG
AAAACTTCTTTACCAACAGAGTACGGCGACAACTGCAAGTGGCTGAACAA
ATGACCACCGCCGCCTCCACATCGCAGCATGCGACATCGTCCTCCACAAT
GATGGCGGGCTCTGGATCCTTGGCGACCTCGTCGTCCGCCGCTGCCCCCA
CAACCACGCCCAGCAGCTCGGCCGTTCGCGCCCTGGCCATGGAGTACAAG
TCGCTGCAGGAAGAGCCGGTGGAGGGATTCCGCGTCAAGCTGATCAACGA
CGACAATCTGTTCGAATGGGAGGTGGCAATCTTCGGGCCACCGGACACCC
TCTACCAGGGCGGCTACTTCAAGGCGCACATGAAGTTCCCGCACGACTAT
CCATACTCACCGCCATCCATACGCTTCCTGACGAAGGTCTGGCATCCGAA
TGTTTACGAGAACGGTGATCTGTGCATATCCATACTACATCCGCCGGTGG
ATGATCCGCAGAGTGGCGAGCTGCCCTGCGAACGCTGGAATCCCACGCAG
AATGTGCGCACCATCCTGCTGTCGGTCATATCGCTGCTCAATGAGCCGAA
CACATTCTCGCCGGCCAACGTGGACGCCTCGGTCATGTACCGCCGATGGC
GGGACTCACAGGGTAAGGACAATGAGTATCCAAACATCATACGAAAACAG
GCACTGGCCGCCAATGCCGAGGCCAAGCGGGAGGGCATTGTGGTTCCGAT
GACCCTGGAGGACTACTGCCTGAAGCCCACGCGCAAGCCCACAACGGAGT
CTGGCCTGGATGCCAACTTCTACGATGATGATTTCGATCTGGAGACGGAG
GATGATCTGCCATCTGATGATGACTTCGATGAGGACGACGACGATGATGA
GGACGAGGATGAAGATGAGGACAGTGCCACGGCGCCGATTAGCAAAAATA
ATGGAGGCAGCAGCAAGTGCAAGAACAACGGGCTGGTCAGAGAGGCGGCC
GCCGCCGGAGCGGACGATGCCGAATCCGCTGATGACAGCGGCAAGGGCGA
GACCACATAATGCAGCCAGGCCAGGGTCGCGTCATCTCTTCCTCCCACTC
CTGCCCAGGGCGGCGAGCCACCGCCTTTTAATTTCTCCAACATTATTACT
ATTATTAATTCTAATTATACACGTTTCGAAACTAAACCGAACAACTGAGA
AAACAATTAAAAAAAAAAAAAAAAAAAA

GH23746.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656.g 2003 CG7656.g 203..1411 1..1209 6045 100 Plus
CG7656.f 1530 CG7656.f 1..1209 1..1209 6045 100 Plus
CG7656.b 1306 CG7656.b 18..1226 1..1209 6045 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15576933..15577594 662..1 3280 99.7 Minus
chr3L 24539361 chr3L 15575983..15576532 1208..659 2750 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15587004..15587665 662..1 3310 100 Minus
3L 28110227 3L 15586053..15586603 1209..659 2755 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15580104..15580765 662..1 3310 100 Minus
3L 28103327 3L 15579153..15579703 1209..659 2755 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:33:43 has no hits.

GH23746.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:34:37 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15575983..15576269 922..1208 100 == Minus
chr3L 15576327..15576529 662..864 100 <- Minus
chr3L 15576934..15577594 1..661 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:20 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 1..960 101..1060 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:24 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RE 1..960 101..1060 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:48:01 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 1..960 101..1060 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:17 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RC 1..1026 35..1060 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:43:43 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 1..960 101..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:42:07 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 1..1208 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:24 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 1..1208 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:48:01 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 203..1410 1..1208 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:17 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RC 1..1208 1..1208 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:43:43 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
CG7656-RD 203..1410 1..1208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:37 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15586054..15586600 662..1208 100 <- Minus
3L 15587005..15587665 1..661 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:37 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15586054..15586600 662..1208 100 <- Minus
3L 15587005..15587665 1..661 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:34:37 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15586054..15586600 662..1208 100 <- Minus
3L 15587005..15587665 1..661 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:48:01 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15579154..15579700 662..1208 100 <- Minus
arm_3L 15580105..15580765 1..661 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:29 Download gff for GH23746.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15579154..15579700 662..1208 100 <- Minus
3L 15580105..15580765 1..661 100   Minus

GH23746.pep Sequence

Translation from 34 to 1059

> GH23746.pep
MSRHLENFFTNRVRRQLQVAEQMTTAASTSQHATSSSTMMAGSGSLATSS
SAAAPTTTPSSSAVRALAMEYKSLQEEPVEGFRVKLINDDNLFEWEVAIF
GPPDTLYQGGYFKAHMKFPHDYPYSPPSIRFLTKVWHPNVYENGDLCISI
LHPPVDDPQSGELPCERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV
MYRRWRDSQGKDNEYPNIIRKQALAANAEAKREGIVVPMTLEDYCLKPTR
KPTTESGLDANFYDDDFDLETEDDLPSDDDFDEDDDDDEDEDEDEDSATA
PISKNNGGSSKCKNNGLVREAAAAGADDAESADDSGKGETT*

GH23746.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10391-PA 297 GF10391-PA 2..297 8..341 1019 70.1 Plus
Dana\GF21720-PA 311 GF21720-PA 5..208 60..264 771 67.8 Plus
Dana\GF18145-PA 167 GF18145-PA 10..147 67..207 420 53.9 Plus
Dana\GF21159-PA 167 GF21159-PA 2..149 60..207 414 52 Plus
Dana\GF19999-PA 113 GF19999-PA 1..93 113..208 289 55.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13536-PA 265 GG13536-PA 1..265 23..341 1014 81.2 Plus
Dere\GG16305-PA 168 GG16305-PA 10..148 67..208 435 54.2 Plus
Dere\GG17023-PA 168 GG17023-PA 10..146 67..203 431 55.5 Plus
Dere\GG19056-PA 167 GG19056-PA 2..149 60..207 415 52 Plus
Dere\GG11277-PA 151 GG11277-PA 2..134 60..206 286 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14479-PA 324 GH14479-PA 1..324 23..341 1168 77.1 Plus
Dgri\GH22344-PA 170 GH22344-PA 19..150 74..208 431 56.3 Plus
Dgri\GH14044-PA 167 GH14044-PA 10..146 67..203 420 54.7 Plus
Dgri\GH24823-PA 167 GH24823-PA 2..161 60..221 416 48.1 Plus
Dgri\GH15302-PA 151 GH15302-PA 2..134 60..206 286 40.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PE 319 CG7656-PE 1..319 23..341 1688 100 Plus
CG7656-PD 319 CG7656-PD 1..319 23..341 1688 100 Plus
CG7656-PF 317 CG7656-PF 1..317 23..341 1664 99.4 Plus
CG7656-PA 317 CG7656-PA 1..317 23..341 1664 99.4 Plus
CG40045-PA 168 CG40045-PA 10..148 67..208 433 54.2 Plus
Ubc87F-PA 168 CG9602-PA 10..146 67..203 424 55.5 Plus
CG40045-PD 167 CG40045-PD 10..147 67..208 414 53.5 Plus
Ubc7-PB 167 CG4443-PB 2..149 60..207 411 52 Plus
Ubc7-PA 167 CG4443-PA 2..149 60..207 411 52 Plus
CG40045-PC 132 CG40045-PC 15..112 108..208 315 55.4 Plus
Ubc6-PC 151 CG2013-PC 2..134 60..206 290 40.8 Plus
Ubc6-PA 151 CG2013-PA 2..134 60..206 290 40.8 Plus
eff-PC 147 CG7425-PC 2..132 63..207 251 33.8 Plus
eff-PB 147 CG7425-PB 2..132 63..207 251 33.8 Plus
eff-PA 147 CG7425-PA 2..132 63..207 251 33.8 Plus
vih-PA 178 CG10682-PA 15..162 42..209 240 32.7 Plus
ben-PE 151 CG18319-PE 2..130 61..203 239 33.6 Plus
ben-PD 151 CG18319-PD 2..130 61..203 239 33.6 Plus
ben-PB 151 CG18319-PB 2..130 61..203 239 33.6 Plus
ben-PC 151 CG18319-PC 2..130 61..203 239 33.6 Plus
ben-PA 151 CG18319-PA 2..130 61..203 239 33.6 Plus
CG10862-PA 354 CG10862-PA 210..335 64..203 238 32.1 Plus
CG40045-PB 97 CG40045-PB 1..77 129..208 236 55 Plus
lwr-PD 159 CG3018-PD 2..157 60..228 231 34.7 Plus
lwr-PC 159 CG3018-PC 2..157 60..228 231 34.7 Plus
lwr-PB 159 CG3018-PB 2..157 60..228 231 34.7 Plus
lwr-PA 159 CG3018-PA 2..157 60..228 231 34.7 Plus
CG5440-PC 169 CG5440-PC 3..156 44..211 224 29.8 Plus
CG5440-PB 169 CG5440-PB 3..156 44..211 224 29.8 Plus
CG2574-PA 239 CG2574-PA 19..197 12..211 221 27.7 Plus
CG3473-PB 151 CG3473-PB 11..130 70..203 217 33.6 Plus
CG3473-PA 151 CG3473-PA 11..130 70..203 217 33.6 Plus
Ubc2-PD 232 CG6720-PD 38..221 22..211 212 28.4 Plus
Ubc2-PC 232 CG6720-PC 38..221 22..211 212 28.4 Plus
Ubc2-PB 232 CG6720-PB 38..221 22..211 212 28.4 Plus
Ubc2-PA 232 CG6720-PA 38..221 22..211 212 28.4 Plus
CG8188-PD 209 CG8188-PD 12..139 60..201 208 32.4 Plus
CG8188-PC 209 CG8188-PC 12..139 60..201 208 32.4 Plus
CG8188-PB 209 CG8188-PB 12..139 60..201 208 32.4 Plus
CG8188-PA 209 CG8188-PA 12..139 60..201 208 32.4 Plus
Ubc4-PC 199 CG8284-PC 2..133 60..203 207 34.5 Plus
Ubc4-PB 199 CG8284-PB 2..133 60..203 207 34.5 Plus
Ubc4-PA 199 CG8284-PA 2..133 60..203 207 34.5 Plus
Ubc10-PA 154 CG5788-PA 2..141 62..214 204 28.1 Plus
morgue-PA 491 CG15437-PA 369..469 95..207 196 37.2 Plus
Ubc84D-PA 153 CG12799-PA 2..131 62..204 183 28 Plus
CG7220-PE 190 CG7220-PE 30..156 50..186 179 33.6 Plus
CG7220-PF 190 CG7220-PF 30..156 50..186 179 33.6 Plus
CG7220-PB 190 CG7220-PB 30..156 50..186 179 33.6 Plus
CG7220-PC 154 CG7220-PC 5..120 61..186 176 34.9 Plus
CG7220-PA 154 CG7220-PA 5..120 61..186 176 34.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13630-PA 321 GI13630-PA 1..321 23..341 1272 81.7 Plus
Dmoj\GI23981-PA 168 GI23981-PA 10..157 67..223 442 52.2 Plus
Dmoj\GI24418-PA 167 GI24418-PA 10..157 67..223 432 52.2 Plus
Dmoj\GI16154-PA 167 GI16154-PA 2..161 60..221 416 48.8 Plus
Dmoj\GI22506-PA 151 GI22506-PA 2..134 60..206 286 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25518-PA 259 GL25518-PA 1..259 23..341 946 68.9 Plus
Dper\GL12289-PA 170 GL12289-PA 19..159 74..223 435 54 Plus
Dper\GL24447-PA 167 GL24447-PA 10..146 67..203 420 54.7 Plus
Dper\GL18350-PA 167 GL18350-PA 2..149 60..207 407 50.7 Plus
Dper\GL22213-PA 151 GL22213-PA 2..134 60..206 286 40.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20506-PA 258 GA20506-PA 1..258 23..341 941 68.8 Plus
Dpse\GA26259-PA 170 GA26259-PA 19..159 74..223 435 54 Plus
Dpse\GA21906-PA 167 GA21906-PA 10..146 67..203 420 54.7 Plus
Dpse\GA22561-PA 242 GA22561-PA 6..185 54..245 418 44.8 Plus
Dpse\GA18185-PA 167 GA18185-PA 2..149 60..207 407 50.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24479-PA 271 GM24479-PA 1..271 23..341 1047 84.6 Plus
Dsec\GM23423-PA 168 GM23423-PA 10..148 67..208 435 54.2 Plus
Dsec\GM25907-PA 168 GM25907-PA 10..146 67..203 427 55.5 Plus
Dsec\GM10669-PA 151 GM10669-PA 2..134 60..206 286 40.8 Plus
Dsec\GM25828-PA 147 GM25828-PA 2..128 63..203 244 34 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12552-PA 271 GD12552-PA 1..271 23..341 1057 85 Plus
Dsim\GD11958-PA 168 GD11958-PA 10..148 67..208 435 54.2 Plus
Dsim\GD20475-PA 168 GD20475-PA 10..146 67..203 427 55.5 Plus
Dsim\GD24840-PA 167 GD24840-PA 2..149 60..207 403 50.7 Plus
Dsim\GD19645-PA 151 GD19645-PA 2..134 60..206 286 40.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13967-PA 318 GJ13967-PA 1..318 23..341 1262 84.7 Plus
Dvir\GJ14277-PA 220 GJ14277-PA 63..204 67..211 437 53.8 Plus
Dvir\GJ11187-PA 168 GJ11187-PA 10..148 67..208 435 54.2 Plus
Dvir\GJ16432-PA 167 GJ16432-PA 2..161 60..221 417 48.8 Plus
Dvir\GJ10109-PA 151 GJ10109-PA 2..134 60..206 286 40.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20435-PA 322 GK20435-PA 2..322 25..341 1211 80.2 Plus
Dwil\GK19931-PA 294 GK19931-PA 10..235 63..286 598 51.3 Plus
Dwil\GK12909-PA 168 GK12909-PA 10..148 67..208 437 54.2 Plus
Dwil\GK13059-PA 167 GK13059-PA 10..147 67..207 422 53.9 Plus
Dwil\GK16076-PA 167 GK16076-PA 2..149 60..207 408 51.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22254-PA 273 GE22254-PA 1..273 23..341 1015 82.9 Plus
Dyak\GE19830-PA 273 GE19830-PA 1..273 23..341 1015 82.9 Plus
Dyak\GE15167-PA 168 GE15167-PA 10..148 67..208 435 54.2 Plus
Dyak\GE24416-PA 168 GE24416-PA 10..146 67..203 424 54.7 Plus
Dyak\crl-PA 167 GE17278-PA 2..149 60..207 415 52 Plus

GH23746.hyp Sequence

Translation from 34 to 1059

> GH23746.hyp
MSRHLENFFTNRVRRQLQVAEQMTTAASTSQHATSSSTMMAGSGSLATSS
SAAAPTTTPSSSAVRALAMEYKSLQEEPVEGFRVKLINDDNLFEWEVAIF
GPPDTLYQGGYFKAHMKFPHDYPYSPPSIRFLTKVWHPNVYENGDLCISI
LHPPVDDPQSGELPCERWNPTQNVRTILLSVISLLNEPNTFSPANVDASV
MYRRWRDSQGKDNEYPNIIRKQALAANAEAKREGIVVPMTLEDYCLKPTR
KPTTESGLDANFYDDDFDLETEDDLPSDDDFDEDDDDDEDEDEDEDSATA
PISKNNGGSSKCKNNGLVREAAAAGADDAESADDSGKGETT*

GH23746.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7656-PE 319 CG7656-PE 1..319 23..341 1688 100 Plus
CG7656-PD 319 CG7656-PD 1..319 23..341 1688 100 Plus
CG7656-PF 317 CG7656-PF 1..317 23..341 1664 99.4 Plus
CG7656-PA 317 CG7656-PA 1..317 23..341 1664 99.4 Plus
CG40045-PA 168 CG40045-PA 10..148 67..208 433 54.2 Plus