Clone GH23768 Report

Search the DGRC for GH23768

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:237
Well:68
Vector:pOT2
Associated Gene/TranscriptCG9919-RA
Protein status:GH23768.pep: gold
Preliminary Size:994
Sequenced Size:1646

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9919 2002-01-01 Sim4 clustering to Release 2
CG9919 2002-06-13 Blastp of sequenced clone
CG9919 2003-01-01 Sim4 clustering to Release 3
CG9919 2008-04-29 Release 5.5 accounting
CG9919 2008-08-15 Release 5.9 accounting
CG9919 2008-12-18 5.12 accounting

Clone Sequence Records

GH23768.complete Sequence

1646 bp (1646 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122130

> GH23768.complete
CCTTGACGCAAGTCAGGGCATTGTGTTGAAAGCTTCATGATGAACATGCT
CTTTGGCAATTGTGTGGGCAGCTGTGACCAGCTGGCCGGTCCACCGCCGG
ACTTTATATTATCGATGCCGCCGCCGCCGCTGCCGTCCTTTCTAATCTCA
AAGCCGGCGACGGTGGACATCCTGGTGCCCTCCAATGAGTCGCAGCCGTG
CTTTGCCGCCTTCATGTGCGGCCATGGGATGCAGCACAACGAGAGCGGAA
ACGCGCTAATGGAGCTGGTGAGAAGTGATTCCAAGAGTCTGGAGAGCGTC
TGGCTGTTTGTCTCGTCCTGCATCGGGATCTTTGTGTTCGGCTGCTTCCT
GGCCCTCATCGTGATGCGGTGCAGAGACAGCTCCTTTTTCTCGTACCACG
ACGCCAATATCAAGCAGACGGCCATTAATGCCCTCGGCGAGGCGACCAAA
TCCAATGCCTTCACATCCGGCGGAATTCTTTATCCCTGCGCCACGGCCAA
CAGTAGGGATCTGCTCCAGAGCCAGCTGGTCAACGATAGCCGTCTACTGT
GGGCCACACTAACGCCCCACGGCACCAGGCACTTCATCATCGAGAACTCC
CAGGATGGGCACTACGAATCGGTGGACTATCGCGGCAAGTCGCACAGCCA
GGTGTTCCGTGGCTACGAGAAGCATTCGCAGTCGTTTGTCAAGTCCTTTG
ACAACAATGGCTTCGTTGACTACGACTATGAGGATCCCACGCCATTGATG
GACTCCTACCATGATGACATGGACTCCGGCTACCAGGAGCCGCACGAGGT
GACTGGCTCCCTGAAGCGTTCGGCGATGCGAACTGTGGAATCACTGAACA
CTGACACCCCGACCAGCGGCGGTTCGAGCTCCAACTATCATACCAGCGCC
AATCAGATCGGCAACACCAAGTCCATTAGCCGCAAGACGACGCTGTCACG
TCGCATCAGCGATGCCTCCTCCCAGAACGGAACATCCATGTAAATCCATG
CTGTCAATTGGGTAATGTACATTTCCCATGGAATGGAGGCCATTGGGATT
GAGATCGGGGATACTCGGAGATGGGAGAAGAGAGATCCGGTCATGTCGTC
CACAATAGAAACTGCAGAACGCAGTGAATACACGCTGATATTTTAGACTA
TTTAAAAAAAAAAAAGAGTGAGGCACAAGTGCGGGCTGTTCTCGGGGATC
ACAGGAGCAGTGCGTCCAGGAGACCAACCCGGGCTAACAGGATTACAACT
GCTTGAATCGTAGCTCATTTTAAGCCCACTATGGATTGCATCCGCTGGTG
TACCATGTATAATAATCGTGCACGAAATACTCGCTTGTAAACACACTACA
CACACACACGTCTTTTATAAATAATACCCGCAACTATTAAAACTATATCA
GATAATCCAACTAACGCTGATCGGAAAGGCCAACTATTGTATCTGCATAT
AGCTATTACCAACCTATCACTTGGAGTCCTTCACGCCCGGATCGGGGTCA
GGGGTCATGGGTCAGGAATAAATAAACATACATAGATTTTGAAAATACTC
TGAACACGTCTCGCCTTCAGCGCTCGTTTAATTGTTAGCCATAAGAACAA
TAAATAATAATAAAAATTCTCAGTAGTAAAAAAAAAAAAAAAAAAA

GH23768.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-RA 1825 CG9919-RA 199..1825 1..1627 8135 100 Plus
CalpC-RA 2903 CalpC-RA 2741..2903 1635..1473 785 98.7 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16218169..16219102 1627..692 4585 99.6 Minus
chrX 22417052 chrX 16219625..16219971 377..31 1705 99.4 Minus
chrX 22417052 chrX 16219245..16219560 693..378 1565 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16328429..16329372 1635..692 4690 99.8 Minus
X 23542271 X 16329895..16330241 377..31 1735 100 Minus
X 23542271 X 16329515..16329830 693..378 1580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16336527..16337470 1635..692 4690 99.7 Minus
X 23527363 X 16337993..16338339 377..31 1735 100 Minus
X 23527363 X 16337613..16337928 693..378 1580 100 Minus
X 23527363 X 16338802..16338837 36..1 165 97.2 Minus
Blast to na_te.dros performed 2019-03-16 19:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 195..273 1543..1622 118 62.5 Plus
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4951..5032 1540..1622 115 61.4 Plus

GH23768.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:53:01 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16218169..16219100 694..1627 99 <- Minus
chrX 16219245..16219560 378..693 99 <- Minus
chrX 16219625..16219969 33..377 99 <- Minus
chrX 16220438..16220469 1..32 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:21 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 1..957 37..993 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:42 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 1..957 37..993 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:46 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 1..957 37..993 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:12:31 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 1..957 37..993 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:15 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 1..957 37..993 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:47:57 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 2..1628 1..1627 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:42 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 2..1628 1..1627 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:46 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 21..1647 1..1627 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:12:31 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 2..1628 1..1627 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:15 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
CG9919-RA 21..1647 1..1627 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:01 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
X 16328437..16329370 694..1627 100 <- Minus
X 16329515..16329830 378..693 100 <- Minus
X 16329895..16330239 33..377 100 <- Minus
X 16330708..16330739 1..32 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:01 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
X 16328437..16329370 694..1627 100 <- Minus
X 16329515..16329830 378..693 100 <- Minus
X 16329895..16330239 33..377 100 <- Minus
X 16330708..16330739 1..32 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:53:01 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
X 16328437..16329370 694..1627 100 <- Minus
X 16329515..16329830 378..693 100 <- Minus
X 16329895..16330239 33..377 100 <- Minus
X 16330708..16330739 1..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:46 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16222470..16223403 694..1627 100 <- Minus
arm_X 16223548..16223863 378..693 100 <- Minus
arm_X 16223928..16224272 33..377 100 <- Minus
arm_X 16224741..16224772 1..32 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:45:12 Download gff for GH23768.complete
Subject Subject Range Query Range Percent Splice Strand
X 16336535..16337468 694..1627 100 <- Minus
X 16337613..16337928 378..693 100 <- Minus
X 16337993..16338337 33..377 100 <- Minus
X 16338806..16338837 1..32 100   Minus

GH23768.hyp Sequence

Translation from 36 to 992

> GH23768.hyp
MMNMLFGNCVGSCDQLAGPPPDFILSMPPPPLPSFLISKPATVDILVPSN
ESQPCFAAFMCGHGMQHNESGNALMELVRSDSKSLESVWLFVSSCIGIFV
FGCFLALIVMRCRDSSFFSYHDANIKQTAINALGEATKSNAFTSGGILYP
CATANSRDLLQSQLVNDSRLLWATLTPHGTRHFIIENSQDGHYESVDYRG
KSHSQVFRGYEKHSQSFVKSFDNNGFVDYDYEDPTPLMDSYHDDMDSGYQ
EPHEVTGSLKRSAMRTVESLNTDTPTSGGSSSNYHTSANQIGNTKSISRK
TTLSRRISDASSQNGTSM*

GH23768.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-PA 318 CG9919-PA 1..318 1..318 1683 100 Plus
CG9919-PB 317 CG9919-PB 1..317 1..318 1667 99.7 Plus

GH23768.pep Sequence

Translation from 36 to 992

> GH23768.pep
MMNMLFGNCVGSCDQLAGPPPDFILSMPPPPLPSFLISKPATVDILVPSN
ESQPCFAAFMCGHGMQHNESGNALMELVRSDSKSLESVWLFVSSCIGIFV
FGCFLALIVMRCRDSSFFSYHDANIKQTAINALGEATKSNAFTSGGILYP
CATANSRDLLQSQLVNDSRLLWATLTPHGTRHFIIENSQDGHYESVDYRG
KSHSQVFRGYEKHSQSFVKSFDNNGFVDYDYEDPTPLMDSYHDDMDSGYQ
EPHEVTGSLKRSAMRTVESLNTDTPTSGGSSSNYHTSANQIGNTKSISRK
TTLSRRISDASSQNGTSM*

GH23768.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19620-PA 249 GF19620-PA 1..249 75..318 1027 80.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19330-PA 318 GG19330-PA 1..318 1..318 1670 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12464-PA 323 GH12464-PA 1..323 2..318 1359 82.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9919-PA 318 CG9919-PA 1..318 1..318 1683 100 Plus
CG9919-PB 317 CG9919-PB 1..317 1..318 1667 99.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11142-PA 319 GI11142-PA 1..319 2..318 1378 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15895-PA 309 GL15895-PA 1..309 2..318 1268 79.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22123-PA 309 GA22123-PA 1..309 2..318 1268 79.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13408-PA 291 GM13408-PA 1..291 27..318 1544 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15755-PA 316 GD15755-PA 1..316 2..318 1682 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18699-PA 310 GJ18699-PA 1..282 2..285 1263 84.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10065-PA 319 GK10065-PA 1..319 2..318 1358 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15977-PA 317 GE15977-PA 1..317 1..318 1689 99.1 Plus