Clone GH23825 Report

Search the DGRC for GH23825

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:238
Well:25
Vector:pOT2
Associated Gene/TranscriptCG11448-RA
Protein status:GH23825.pep: gold
Preliminary Size:3974
Sequenced Size:3727

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11448 2001-01-01 Release 2 assignment
CG11448 2001-07-04 Blastp of sequenced clone
CG11448 2003-01-01 Sim4 clustering to Release 3
CG11448 2008-04-29 Release 5.5 accounting
CG11448 2008-08-15 Release 5.9 accounting
CG11448 2008-12-18 5.12 accounting

Clone Sequence Records

GH23825.complete Sequence

3727 bp (3727 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060341

> GH23825.complete
ATGTGGGAATCGGCAGCGAAAAGCGACTCGGCGGCAGTAACAACTAGAGT
GAATGAAGTGAGCACTGCCACTCCCACGCACACTACTGTGCAGTCTGTGT
GCGCCAACTGTGAATTGCGAAGTGCGAATTCCGTACTTCGGATTGCGGAT
TCCCCCCCTCCCTTAAAGCACTTGGAAAACCAACACCTGGCGCACGTACA
CGCACACGCACACTTGTCCTGCTAGCGAAAGAAAAATCCCTGTCAGCTGG
TGCAGCGATTCCCGAAGCAACTCCGAGGAGCAGGACACCGTGGAAAGAGG
CGACAACTGAAGCTGGTCTTCAGTGAACACAGAGTCCAGTGAGCAAGTGT
GAGCAAGTAAACAAGTGATACAGCGCTTGGCAGGAGTCACAGATTATCTG
AGCGACCACCTGGATGCCCGGCTTTCACCTCAATGAGATGGGTGAAATGG
TCCTGGACGCCATCGACGACATCGGCGTGGTCGATGTGTACGACTTGGCC
TCCGACATTGGCAAGGAGTACGAGCGGATCATGGACCGCTTCGGCACGGA
CGCCGTCAGCGGGCTGATGCCCAAGATCATCAACACCCTGGAGCTGTTGG
AGGCGCTGGCCACGAAGAACGAGCGCGAGAACGCCACCATCCAGGAGCTG
CGCGATAAGGTGGCCCAGCTGGAGAGCGAGAAGCTGGAGAAGGCCGAGTT
CCGGCGGCGGTTCGACAAGGAGCTGGAGCTGATCGAAGAGCAGTGGCGCA
GCGAGACCAACGAGCTGGTCGATCTCGTCTCCTCGCTGCAAGACGAGAAC
AAGCGGCTGGTAAAGCAGACTCAGGATCTGCAGTCATCGTCCGCCCAGAG
CTCCGGCCTGGGGGCCAGTCTCACCGAGAGCATTATCAGCATGACCAACC
ACGAGCTGCACAGCGCTCTTTCGGATACTCAAGTGCTGCAACGGCTGAAG
GAGCAGATATACAAGCAGCGCGACGAGTTGAAGCACCGCGAGCGTGAGCT
GCAGGACAAGTACAGCGAGCTGGAGCACCTCAATATCCAGGCGGAGCGTC
TGAAGGCATCAGAGCGAGATACCCGGCGCCGCCACAAGCTGATGCAGGCC
CAAGTGAAGACGCTGTGCGAGGAGCGCGCCGACTTTCTTGCCCAGCTGCA
GGACCAGAGCCGGGAGATCAACCAACTGCGCAAGCGATTGGGCCTGGCCG
AAAAGGAGAATGAGGATTTGGTGGCCTCGTACGACGATGGCCAGAACGAT
CCCAACCGGCCGCGGTACACCACGCGCGAGCTGAAAGAGTTGATTAGCGA
GCGCGATGAGCTGCTGACCACCATCGACACCCTCAACGAGCAGCTGGCGG
AGCTGAAGCCACCAAGCCAGGCGAAGGGCAAGCGGCAGCGTCACTTCTCC
AGCTCCGACGATAGCGATGAGGACGACGATGGTCACGTGGCGGACAACGA
TGATGACGACGACGAGGAGGAGGCGGCTGCCGAGGCGAACGAGCTGGAGC
CACCAGCGGCCGGAGAAACGCCACCTGGACACGATGCGCCCGTGCAGGGC
CCTTTGCCCTACGAGCCGGACGATGCGCCCTGGAAGAAGAGCTCCGAGTC
GGGAATACGCAAATTCTTCCGGAAGCTGTTCTCGGACCCGTCGGACGGCA
GCAACACGTTCCCGAAACGTTCCTTGGCCACGCTCTCCAAGATGGCGCTG
TCGGCCACGCCCGGTTCCGTTTCCGCCTCCGCAGCGGCGAAGTAAGCGCC
CCTTAAAGCATCCGAGTTGGCGTGCATTTCACTTTTCGTTTGTTTTCTGT
TTTTCCGTTTCCGTTCCATTCCGTTCCGTTCCGTTTGCACTGCCCCCCGC
ACCCCTGCATCTTGCATCCTAATTTATTATTTATTTTTTACTTTTACGTC
TTACGATTACGTTTACATTTAGTTTAGGCAACAGCCTGTATCTGACCCTG
TCCCTCGCCATTCACCTGCTCCGCCTGAGCTGTACATACATAGTTTACAC
ACTCGATTGCTGTGCCCTCATAATTCTAAGTTGTTATGCAATTTTGTTTA
CGTAATACGCGTTTTATTCGTAACTCGTAACCCCTAACTGTACTGGATAT
ATTTAATACGAATCCACTTTGTATTTTTCGTACCTTCGATTTATTCTAAC
TTGATTAACGACTACCACATAAGACTCCAAACATACCACAGCCCCCACAT
GTGCACGTGTTTCAAAAATCAAGATCGAGAACGAAAACGAGAACGAAAAC
GATATCGAGATTGTGCAAAGATTGCCGAGTGAGTTTTTAATGAATTTAGA
CAAAAACAAGCTTAGAAAGACAAACAGTCCTCCCAGGTGCAGATGCAGAG
AAAACGATTCGGTGAGATGAGGAGACGAGACGAGGAGGACTCTGGTTCTG
GGACCCCAGATTTTAGAAAGTCTAGGTAGAACGGGAAGATTTTGCTTCAA
TTATCCGTAGTGTAACTGTCCCTAAGACCCCTGCATCTATCTAGATCTTC
GGCTATCGCCAGCCCGTATGAGTATTTTAGCACTCTCATAGCAGTTGCCC
CAAGCGGCCTTATAAATATATTACAAATTTATCAAAATACGCAAACCTTA
GAGCGAAAGAAACCTAAAAGTATATATAATTGATATATAATTAGCAAACG
TTACAACCTTAGCGCATTGTTTGTTGACTTGAATTGAACTAACTAACGAA
ACCAATCTCAGCATAGTAGATTCCATTGATAGCATTCGATTGCACAAAGA
TGCCAAAAAGCGAAAATCTCCGCGTTACCCCATTGCCGGCCGGCCAGTCT
AAATCAAGGAATGTTTTAGCCAAGAGTTTTACCATAGACTTAGCCACTGA
CCAGCTCGAATTGTTGTTACCGCACCCAGACGACTTCGCCCAGAGCCCCC
ACTCCACTTGAAGCCCAGTGATTTCGAGGAGATCTCAGTCCGATCCTCGT
TCATAGCTAGTATCCATGAGAGAGACGCCCATGTAGTGCAATTACCAATA
TGGTGTCACTTCCCGCTCCCCTTCCACTCACAAGCACAAAGCGAGGAAAC
TCCGTTTACATATCAGCTCCATCGCTATCGTCGATGCGAACGTGCCAAAG
ACTAATGGTCAGACCCTATGCCCCCATTATTCGCAACTCCCCCCCACTAC
CCACACCACGCACCGAACACCCAGCCCACAACACCCGACTTACCAATCTC
AATTAACCCATCTCGTTTCGAACACAACAAAGAGTGGCAACTGAACTTTT
ATAAAATTGAACACGAGCGCGCAATGGCATCGATATGAAAAAGTGGACTA
ACGTTGAGTGGGTGAAGACCACGAAAAGAAGATGGAGAGAAATTGAGTAT
TTGGTGAATTAATGTTAACTAAATTTATATACACATATACACATGCATTA
TACATAATATACTTTACTATATACTATGTAATACCGTATTATATGGAACT
ATGACTAACCAAAAAGGCAACAAGGCAACAATTATACAAAATTCAAAGCG
TACCAGGGTGGCACTTGGACCATGGACTGCAGGAGCGACCAGAGCGATAG
CGAGCATCGGATCGGATCGGATTGGATCGCATCATGGTGAACCGCATCAG
AGGGCGACGCCTCCGCATCCGGGTATCATCTGCTCACCCCTGTACGTACA
TCAAATTTATGAGTGGCTTCCTTTGAGCGACCACCAAAATAAACTTATGA
ACCGTGGAAAAAAAAAAAAAAAAAAAA

GH23825.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-RA 3844 CG11448-RA 89..3796 1..3708 18540 100 Plus
CG11448.a 3663 CG11448.a 1830..3615 1923..3708 8930 100 Plus
CG11448.a 3663 CG11448.a 89..1829 1..1741 8705 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1289171..1291262 1616..3707 10445 100 Plus
chrX 22417052 chrX 1287056..1288083 1..1028 5140 100 Plus
chrX 22417052 chrX 1288149..1288640 1029..1520 2460 100 Plus
chrX 22417052 chrX 1289023..1289118 1520..1615 480 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1395246..1397338 1616..3708 10465 100 Plus
X 23542271 X 1393131..1394158 1..1028 5140 100 Plus
X 23542271 X 1394224..1394715 1029..1520 2460 100 Plus
X 23542271 X 1395098..1395193 1520..1615 480 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1403344..1405436 1616..3708 10465 100 Plus
X 23527363 X 1401229..1402256 1..1028 5140 100 Plus
X 23527363 X 1402322..1402813 1029..1520 2460 100 Plus
X 23527363 X 1403196..1403291 1520..1615 480 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:42:54 has no hits.

GH23825.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:43:42 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1287056..1288083 1..1028 100 -> Plus
chrX 1288149..1288525 1029..1405 100 == Plus
chrX 1288592..1288639 1472..1519 100 -> Plus
chrX 1289023..1289118 1520..1615 100 -> Plus
chrX 1289171..1291262 1616..3707 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:28 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 1..1332 414..1745 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:03 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 1..1332 414..1745 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:48:38 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 1..1332 414..1745 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:53 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 1..1332 414..1745 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:32 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 1..1332 414..1745 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:21:58 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 67..3773 1..3707 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:03 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 67..3773 1..3707 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:48:38 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 78..3784 1..3707 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:56:53 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 67..3773 1..3707 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:32 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
CG11448-RA 78..3784 1..3707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:42 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
X 1393131..1394158 1..1028 100 -> Plus
X 1394224..1394714 1029..1519 100 -> Plus
X 1395098..1395193 1520..1615 100 -> Plus
X 1395246..1397337 1616..3707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:42 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
X 1393131..1394158 1..1028 100 -> Plus
X 1394224..1394714 1029..1519 100 -> Plus
X 1395098..1395193 1520..1615 100 -> Plus
X 1395246..1397337 1616..3707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:42 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
X 1393131..1394158 1..1028 100 -> Plus
X 1394224..1394714 1029..1519 100 -> Plus
X 1395098..1395193 1520..1615 100 -> Plus
X 1395246..1397337 1616..3707 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:48:38 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1287164..1288191 1..1028 100 -> Plus
arm_X 1288257..1288747 1029..1519 100 -> Plus
arm_X 1289131..1289226 1520..1615 100 -> Plus
arm_X 1289279..1291370 1616..3707 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:38 Download gff for GH23825.complete
Subject Subject Range Query Range Percent Splice Strand
X 1401229..1402256 1..1028 100 -> Plus
X 1402322..1402812 1029..1519 100 -> Plus
X 1403196..1403291 1520..1615 100 -> Plus
X 1403344..1405435 1616..3707 100   Plus

GH23825.pep Sequence

Translation from 413 to 1744

> GH23825.pep
MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFGTDAVSG
LMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRF
DKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLG
ASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKY
SELEHLNIQAERLKASERDTRRRHKLMQAQVKTLCEERADFLAQLQDQSR
EINQLRKRLGLAEKENEDLVASYDDGQNDPNRPRYTTRELKELISERDEL
LTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDD
EEEAAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRK
FFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAAK*

GH23825.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21015-PA 439 GF21015-PA 1..439 1..443 2196 95.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12852-PA 442 GG12852-PA 1..442 1..443 2292 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24880-PA 430 GH24880-PA 1..425 1..435 1953 87.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 443 CG11448-PA 1..443 1..443 2239 100 Plus
CG11448-PC 486 CG11448-PC 1..442 1..442 2234 100 Plus
CG11448-PB 448 CG11448-PB 1..448 1..443 2223 98.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15695-PA 426 GI15695-PA 1..425 1..436 1957 87.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:22:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14250-PA 380 GL14250-PA 104..360 175..433 959 81.5 Plus
Dper\GL14250-PA 380 GL14250-PA 1..143 1..142 675 91.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11009-PA 453 GA11009-PA 1..433 1..433 1989 92.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19135-PA 443 GM19135-PA 1..443 1..443 2306 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15229-PA 428 GJ15229-PA 1..425 1..437 1976 88.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16318-PA 437 GK16318-PA 1..436 1..441 1956 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16686-PA 443 GE16686-PA 1..443 1..443 2304 99.3 Plus

GH23825.hyp Sequence

Translation from 413 to 1744

> GH23825.hyp
MPGFHLNEMGEMVLDAIDDIGVVDVYDLASDIGKEYERIMDRFGTDAVSG
LMPKIINTLELLEALATKNERENATIQELRDKVAQLESEKLEKAEFRRRF
DKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQSSSAQSSGLG
ASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDKY
SELEHLNIQAERLKASERDTRRRHKLMQAQVKTLCEERADFLAQLQDQSR
EINQLRKRLGLAEKENEDLVASYDDGQNDPNRPRYTTRELKELISERDEL
LTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDD
EEEAAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRK
FFRKLFSDPSDGSNTFPKRSLATLSKMALSATPGSVSASAAAK*

GH23825.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11448-PA 443 CG11448-PA 1..443 1..443 2239 100 Plus
CG11448-PC 486 CG11448-PC 1..442 1..442 2234 100 Plus
CG11448-PB 448 CG11448-PB 1..448 1..443 2223 98.9 Plus