Clone GH23839 Report

Search the DGRC for GH23839

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:238
Well:39
Vector:pOT2
Associated Gene/TranscriptCG10585-RA
Protein status:GH23839.pep: gold
Preliminary Size:1959
Sequenced Size:1973

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10585 2001-01-01 Release 2 assignment
CG10585 2001-07-04 Blastp of sequenced clone
CG10585 2003-01-01 Sim4 clustering to Release 3
CG10585 2008-04-29 Release 5.5 accounting
CG10585 2008-08-15 Release 5.9 accounting
CG10585 2008-12-18 5.12 accounting

Clone Sequence Records

GH23839.complete Sequence

1973 bp (1973 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051597

> GH23839.complete
CCGAAGCGGCGCTGCCGTGCGAAAACCTGTTCCCGCTCAAGACCGCCGTT
ACACACCCCCTGCGCCGCCTCCTCGGAATTCCATGACACTGCGTGGGGCA
ATAAAAACAAACAGAACGCTTGGCGGCCACCTGAGAGCGGAGCAGCGACC
AACTGTAAAAGTGGGCCGCCCGGGAAGAAGAAGAAGCAGCGTAGGCAGCA
GGTGACGCCGACAGCGACGTCGGCAGAGACGCAAGCAGCGACGGACCTCG
AAGATTTCACTTTTCGACGAACGATTTAACTGAGCGGAGCTAAGAAACGC
GATTTTCATACAAGCAATTGAAAAAAATAGTCGTGTTGTAGGCGAAAATA
ACTAGAAAATGGCCATGTACCGCGCCAGTGGGTTAAGGATTATGCAACAG
ATGCGACGCAGGATTCCCGTCGAACTGCAGCCACTCCAAGTGGCCAAAGC
TGCGCCTGCGCTGCAAACTTTCACTTCTCAGCGCTGGACTTCGACGACGA
CGACCAGTGGAAAGCATGCCAGTCCACAGGTTACGACCCCGCCCCCGAGA
CACGACTGGAATAGGGCGGTCAGCGAGGCGGAGCGCATCGTCGGCTATCC
CACATCCTTCCTCAGTCTGCGCTGGCTGCTCAGCGACGAGATCGCCAATG
TGGCGCTGCACCTGCGCAAACTGGTGGGCAGCGCCCATCCGCTGATGAAG
ACGGCCAAGCACCTGCTCTACAATGGCAAGAACACGATGCAAGCCTGGGG
ATTGATAGTGCTCCTGGTGTCCAAGGCCGCAGGACATGCACCCAGTGTTC
CAGACGTGGAGCAGGACAAGAGTGCCGGAGTGCTGCACTCCCAAAGGGCT
TTGGCCGAGGTCACCGAGATGATACGGATATCTCATCTGGTGCACAATAG
CGTGGTTAATCTGCAATCGAGCACGCAGGCTGGGCAGGATGTGGACACCT
ACGACGACATGTCGTTTGGCAACAAGATCGGCCTGCTGACCGGCGACTAT
CTTCTGGGCCATTCCAGTGCGGAGCTGGCTAATCTGCGCAACCAGGAGGT
GGTGGAGCTGATCTCGTCGGCGGTGCGAGATTTTTCCGAGTCGGAATTCA
TTGGAGAGCGTGATGAACAGAACAACCCGCTGCCTTATAAGCCAGGAACC
TTCCAGCGACCATCTCTCAGCGTTGGAGTGGATTTCAACGAGCACGACGT
GATGACGCCAATGCCGATTGCCCAGGTTCTCGGCAATCCGGAGGAGGAAT
GGGAGTGCCGTAATATCCTTAATGCGGGTAGCCTGCTGGGCAAATCCTGC
CAAGCTTCGCTAAAGCTGGCCGGACAGAGTGAGGAACTGCAGCGACATGC
TTACCGCTTTGGCAAACATTTGGCGCTCGCTTGGCAGGCTTGCTTGGATG
CCGAACCTTTTCAGTGCCCCCAACTGCCGCTAGATGTTACTTTCAGTCTG
GTTAGTGCTCCAGTCCTATTCCACTTGGAGCACGACCCTGGCATGTATTC
TCAATTGGAGGCTGGCAAGCAGTCGGTCGATAACATCGACTACGACAAGA
TCCACAAGGCCATTCTGGCCGGGCCGGCTTTGGCCAAAACCAAGGAACTG
CAGCGGAAGCACACAGCCGCTGCCCTGGCCGTTCTGCAACATTTCCCGGC
GACGGACGCTCGACAGGCTCTGGAGAACATCATTCTGGCCATGCAGGATC
TTTGATCCCGAGCAGCAGTTACTGATTTTTCACGGGTTCAGGGCTTAGGT
TAGTTGTATTTATTCCGTTGGGTAATTTTTCAGTAAAGCAGACGTTGTTG
ACTAATCTTTAATGATTCATTTAAAGTAAAGTTTAAATGCTTTATTTTTC
TGAACTTCAAGTAATACTTGGTGCAAGGTCACAAAAATATATTTTGTAAA
TCGTCTTGTATCGCAAAAGTTCATTTTTATTATAAGGGAAAATATAGTTC
GTCATAAAAAAAAAAAAAAAAAA

GH23839.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10585-RA 2091 CG10585-RA 137..2091 1..1955 9775 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21018094..21019150 899..1955 5285 100 Plus
chr3L 24539361 chr3L 21016959..21017667 1..709 3545 100 Plus
chr3L 24539361 chr3L 21017725..21017914 709..898 950 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21029085..21030147 899..1961 5315 100 Plus
3L 28110227 3L 21027950..21028658 1..709 3545 100 Plus
3L 28110227 3L 21028716..21028905 709..898 950 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21022185..21023247 899..1961 5315 100 Plus
3L 28103327 3L 21021050..21021758 1..709 3545 100 Plus
3L 28103327 3L 21021816..21022005 709..898 950 100 Plus
Blast to na_te.dros performed 2019-03-16 01:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1271..1371 1894..1795 125 62.5 Minus

GH23839.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:53:05 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21016959..21017666 1..708 100 -> Plus
chr3L 21017725..21017914 709..898 100 -> Plus
chr3L 21018094..21019150 899..1955 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:30 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 1..1347 359..1705 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:24:06 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 1..1347 359..1705 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:56:52 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 1..1347 359..1705 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:55 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 1..1347 359..1705 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:43:35 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 1..1347 359..1705 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:22:01 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 56..2010 1..1955 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:24:05 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 56..2010 1..1955 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:52 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 36..1990 1..1955 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:56:55 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 56..2010 1..1955 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:43:35 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
CG10585-RA 36..1990 1..1955 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:05 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21027950..21028657 1..708 100 -> Plus
3L 21028716..21028905 709..898 100 -> Plus
3L 21029085..21030141 899..1955 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:05 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21027950..21028657 1..708 100 -> Plus
3L 21028716..21028905 709..898 100 -> Plus
3L 21029085..21030141 899..1955 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:53:05 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21027950..21028657 1..708 100 -> Plus
3L 21028716..21028905 709..898 100 -> Plus
3L 21029085..21030141 899..1955 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:52 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21021050..21021757 1..708 100 -> Plus
arm_3L 21021816..21022005 709..898 100 -> Plus
arm_3L 21022185..21023241 899..1955 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:41 Download gff for GH23839.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21021050..21021757 1..708 100 -> Plus
3L 21021816..21022005 709..898 100 -> Plus
3L 21022185..21023241 899..1955 100   Plus

GH23839.pep Sequence

Translation from 358 to 1704

> GH23839.pep
MAMYRASGLRIMQQMRRRIPVELQPLQVAKAAPALQTFTSQRWTSTTTTS
GKHASPQVTTPPPRHDWNRAVSEAERIVGYPTSFLSLRWLLSDEIANVAL
HLRKLVGSAHPLMKTAKHLLYNGKNTMQAWGLIVLLVSKAAGHAPSVPDV
EQDKSAGVLHSQRALAEVTEMIRISHLVHNSVVNLQSSTQAGQDVDTYDD
MSFGNKIGLLTGDYLLGHSSAELANLRNQEVVELISSAVRDFSESEFIGE
RDEQNNPLPYKPGTFQRPSLSVGVDFNEHDVMTPMPIAQVLGNPEEEWEC
RNILNAGSLLGKSCQASLKLAGQSEELQRHAYRFGKHLALAWQACLDAEP
FQCPQLPLDVTFSLVSAPVLFHLEHDPGMYSQLEAGKQSVDNIDYDKIHK
AILAGPALAKTKELQRKHTAAALAVLQHFPATDARQALENIILAMQDL*

GH23839.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24292-PA 453 GF24292-PA 1..453 3..448 2171 90.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16155-PA 446 GG16155-PA 1..446 3..448 2345 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15641-PA 445 GH15641-PA 1..445 3..448 2040 87.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10585-PB 448 CG10585-PB 1..448 1..448 2306 100 Plus
CG10585-PA 448 CG10585-PA 1..448 1..448 2306 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12688-PA 444 GI12688-PA 5..444 8..448 1972 84 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24462-PA 443 GL24462-PA 1..443 3..448 2120 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10416-PA 449 GA10416-PA 1..449 3..448 2164 90.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22336-PA 448 GM22336-PA 1..448 1..448 2392 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14926-PA 448 GD14926-PA 1..448 1..448 2388 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12673-PA 446 GJ12673-PA 1..446 3..448 2011 85.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25396-PA 443 GK25396-PA 10..443 23..448 2079 89.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23254-PA 446 GE23254-PA 1..446 3..448 2343 97.3 Plus
Dyak\GE19723-PA 446 GE19723-PA 1..446 3..448 2339 97.1 Plus

GH23839.hyp Sequence

Translation from 358 to 1704

> GH23839.hyp
MAMYRASGLRIMQQMRRRIPVELQPLQVAKAAPALQTFTSQRWTSTTTTS
GKHASPQVTTPPPRHDWNRAVSEAERIVGYPTSFLSLRWLLSDEIANVAL
HLRKLVGSAHPLMKTAKHLLYNGKNTMQAWGLIVLLVSKAAGHAPSVPDV
EQDKSAGVLHSQRALAEVTEMIRISHLVHNSVVNLQSSTQAGQDVDTYDD
MSFGNKIGLLTGDYLLGHSSAELANLRNQEVVELISSAVRDFSESEFIGE
RDEQNNPLPYKPGTFQRPSLSVGVDFNEHDVMTPMPIAQVLGNPEEEWEC
RNILNAGSLLGKSCQASLKLAGQSEELQRHAYRFGKHLALAWQACLDAEP
FQCPQLPLDVTFSLVSAPVLFHLEHDPGMYSQLEAGKQSVDNIDYDKIHK
AILAGPALAKTKELQRKHTAAALAVLQHFPATDARQALENIILAMQDL*

GH23839.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:53:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10585-PB 448 CG10585-PB 1..448 1..448 2306 100 Plus
CG10585-PA 448 CG10585-PA 1..448 1..448 2306 100 Plus