Clone GH23891 Report

Search the DGRC for GH23891

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:238
Well:91
Vector:pOT2
Associated Gene/TranscriptCG9780-RA
Protein status:GH23891.pep: gold
Preliminary Size:2304
Sequenced Size:2185

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9780 2001-01-01 Release 2 assignment
CG9780 2001-09-19 Blastp of sequenced clone
CG9780 2003-01-01 Sim4 clustering to Release 3
CG9780 2008-04-29 Release 5.5 accounting
CG9780 2008-08-15 Release 5.9 accounting
CG9780 2008-12-18 5.12 accounting

Clone Sequence Records

GH23891.complete Sequence

2185 bp (2185 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058449

> GH23891.complete
TGTCTAAGCCGCAGTCTGGAAGCAGAAGCACGGAAGTGGGCCGAGGTATT
AAGAGCGACCTTTTGCTGTTCCGACCTCTAAGAAGAAAACAAGGCCCACT
ACCTCCGGCGCAAACGGCAAATGGCGTCGTGCTCATTTTGATTCGAGCGA
CTACAGCACCAGCACCCAGGAGAAATGATTTCAAAAGCACTGGCCGTCCT
GTGGATAGCTGGCATCGCCTACGGCCAGGACGATCTGCTCAGGGTGGAAA
CCGAATTGTTGAGCTTCTCTCACAACCTAGAGCCGTATCTCGACACCAGC
AAGCAGCCCTGCCAGGACTTCTACGGTTATGTCTGCTCGCACAGCGCCAA
CCTCAGCGAGACTGGCAGGCAGCGATTCCAAAGCTTGCTTAAGGAAACGG
ACGTGGCGCAGCTGATGGACATGGAACTCCAACTGATAAACTTCTTCAAG
TCTTGCGAGAGCGGGCGTGGCGTAGAGGCGCTCAAGGGATCTCAATTGTA
TAGGCAGAGTGGGGGCTGGCCTAGCTTGGAACCGAACAAAGTCAATGCCA
GTCAGCGGACTAACCAAACCCAAAGATGGCTGGGACTTCTTGGGTACTTC
CACGAAGTGGGCGCGCCCTATTTCTTCGAGACGTCGGTCACCATGCAGTC
CAACAAGCGACTTGTGGTACTGCAACCCGACGGCACGCGCCGAAACACTC
TAAGAAAATTCGAGCAGCGGGTGGGCGAAGTCCTGCAAAGCTTCGGGATA
GAACAGAGCCGCGCCCACGTGACCGCCCTCGAAGTGCTCAGCTTGGAGCG
CAGTAGACGGGACATTGTAAAGGCGGATCACGTCGAGGATCAAGTGCAGT
TTTCCTATGGAAACTTTAAGCGCATCGTCTTCGGAAACGCCTCGCTGATC
AGACTGGACTGGGATGGCTACTTCCGCAAGTTGCTAGGCGGCAAAACGCC
ACAGGCCAGCGACACCATTGTAGTCAAACAACTGCCCAGACTGGTTGAGT
ACTTCGCGCTGCTCCAAAACACAAGCATGGTTCGACTTCTTAATTGGATA
TGGACGGACTACTTGATGGACATCGTAGATGCAGACTGCCACCAATTATC
GGAAACCTACGCCGGGGACCTTTACGCCCACGTAGTGCAACGTGTTACGG
CAAATCGAGTCGAACTGGCCCAAATGTACTCGGAGCTGGGAAAGGCCTAC
ACAGACCAGCTAGGCGGCAGTGTGTGGATCGATGAGATCTCTAGGCAGAG
CTCGAGACAGTTTTTGGGTAACATAATGCACACTACGCTGAATGGAGATG
AGCGATTGGACGCGGCATACCACTCGATTTTGTTGGGTCGGCGGAGCCTC
TACCGCAACCTGGAGAAGCTGCGCAAGTTTCAGCGCACGCGACGTTTGGC
CTCCCATTCCGCCCAGCAGGTGCGTCGCTACGCCCAAATGTTCGCTCCAG
TAAATGCGTTCCTAGGGCAGCACAATCTGAGCACGCCGCTCAACTACCTC
CTACTGGGGGAGTTCTTTTCGCGAAGCCTTGTAGCCGCAGGTAGCAGCTC
TCGTACGCAAGGAGCCTGGCGGAGCTCGGACTCCGAGAGGCGCTTTGCCA
TCTTCCAACAGTGCGTAGGTAAGCAGACGAACGCCATCGATCTGCTTCTG
AGCCTGCTCGCCCAAAGGCAAGCGCTTAGTGCTTACGGTCAGTGGCTTGC
CACCCAGGCGGGGCTAGTGGAGAGAGTCGACGCGGTTCTGGCCGCCGGTA
GCTCGAAGATGTCCCTACAGAGGCTCTTTTTCGTTACCAGCCTGCTCGTC
GACTGCCGCTCCGAGCTGGGCGCCCTGCAGCAGGACCGTAAGCGGCAGGT
GACTCACGCCACACTGCGCAACTCGCCGGAGTTCCTGGAGGCCTTTAGGT
GCCGTCCTGGAGATGTCCTCTACCCGCAGGACCAGCGCTGCAATCCTCTT
TAGGGTCGGACCTTGAACTTTTAGCTGCTGTTGCCACCGGTGGTGTTAAA
AATCAATAGGACGTGCCTACAACAACTGGAGGGCTTCTAAGGCAGCGACC
AACCCCCAATTGATTGATTTTTCCCGTCACATTTGCACAGTTTCATGGAT
CACCATATGCTTACGGAAACGTTACGTTACGTGAAAAATAAATGTTGTTC
GCTTGGAAAGACAAAAAAAAAAAAAAAAAAAAAAA

GH23891.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9780-RA 2273 CG9780-RA 68..2230 1..2162 10775 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 117994..119088 2162..1069 5425 99.9 Minus
chr3R 27901430 chr3R 119473..120541 1069..1 5345 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4292274..4293368 2162..1069 5425 99.9 Minus
3R 32079331 3R 4293753..4294821 1069..1 5345 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4033105..4034199 2162..1069 5435 99.9 Minus
3R 31820162 3R 4034584..4035652 1069..1 5345 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:04:20 has no hits.

GH23891.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:05:27 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 117994..119087 1070..2162 99 <- Minus
chr3R 119473..120541 1..1069 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:32 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 1..1779 175..1953 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:24 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 1..1779 175..1953 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:17 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 1..1779 175..1953 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:05 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 1..1779 175..1953 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:51:22 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 1..1779 175..1953 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:50 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 16..2178 1..2162 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:23 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 16..2178 1..2162 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:17 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 20..2182 1..2162 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:05 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 16..2178 1..2162 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:22 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
CG9780-RA 20..2182 1..2162 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:27 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4292274..4293367 1070..2162 99 <- Minus
3R 4293753..4294821 1..1069 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:27 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4292274..4293367 1070..2162 99 <- Minus
3R 4293753..4294821 1..1069 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:05:27 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4292274..4293367 1070..2162 99 <- Minus
3R 4293753..4294821 1..1069 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:17 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 117996..119089 1070..2162 99 <- Minus
arm_3R 119475..120543 1..1069 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:09 Download gff for GH23891.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4033105..4034198 1070..2162 99 <- Minus
3R 4034584..4035652 1..1069 100   Minus

GH23891.pep Sequence

Translation from 174 to 1952

> GH23891.pep
MISKALAVLWIAGIAYGQDDLLRVETELLSFSHNLEPYLDTSKQPCQDFY
GYVCSHSANLSETGRQRFQSLLKETDVAQLMDMELQLINFFKSCESGRGV
EALKGSQLYRQSGGWPSLEPNKVNASQRTNQTQRWLGLLGYFHEVGAPYF
FETSVTMQSNKRLVVLQPDGTRRNTLRKFEQRVGEVLQSFGIEQSRAHVT
ALEVLSLERSRRDIVKADHVEDQVQFSYGNFKRIVFGNASLIRLDWDGYF
RKLLGGKTPQASDTIVVKQLPRLVEYFALLQNTSMVRLLNWIWTDYLMDI
VDADCHQLSETYAGDLYAHVVQRVTANRVELAQMYSELGKAYTDQLGGSV
WIDEISRQSSRQFLGNIMHTTLNGDERLDAAYHSILLGRRSLYRNLEKLR
KFQRTRRLASHSAQQVRRYAQMFAPVNAFLGQHNLSTPLNYLLLGEFFSR
SLVAAGSSSRTQGAWRSSDSERRFAIFQQCVGKQTNAIDLLLSLLAQRQA
LSAYGQWLATQAGLVERVDAVLAAGSSKMSLQRLFFVTSLLVDCRSELGA
LQQDRKRQVTHATLRNSPEFLEAFRCRPGDVLYPQDQRCNPL*

GH23891.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16819-PA 613 GF16819-PA 1..613 1..592 2273 71.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11696-PA 590 GG11696-PA 1..590 1..592 2782 88 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21824-PA 590 GH21824-PA 27..587 31..589 1740 57.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Nepl11-PA 592 CG9780-PA 1..592 1..592 3038 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21929-PA 596 GI21929-PA 1..585 1..590 1747 57 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12332-PA 597 GL12332-PA 1..597 1..592 2260 71.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22031-PA 597 GA22031-PA 1..597 1..592 2266 71.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10713-PA 592 GM10713-PA 1..592 1..592 2942 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19690-PA 593 GD19690-PA 1..593 1..592 2973 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14289-PA 595 GJ14289-PA 9..591 8..592 1810 60.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12140-PA 608 GK12140-PA 4..606 6..590 1924 60 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25364-PA 592 GE25364-PA 1..592 1..592 2730 87.2 Plus

GH23891.hyp Sequence

Translation from 174 to 1952

> GH23891.hyp
MISKALAVLWIAGIAYGQDDLLRVETELLSFSHNLEPYLDTSKQPCQDFY
GYVCSHSANLSETGRQRFQSLLKETDVAQLMDMELQLINFFKSCESGRGV
EALKGSQLYRQSGGWPSLEPNKVNASQRTNQTQRWLGLLGYFHEVGAPYF
FETSVTMQSNKRLVVLQPDGTRRNTLRKFEQRVGEVLQSFGIEQSRAHVT
ALEVLSLERSRRDIVKADHVEDQVQFSYGNFKRIVFGNASLIRLDWDGYF
RKLLGGKTPQASDTIVVKQLPRLVEYFALLQNTSMVRLLNWIWTDYLMDI
VDADCHQLSETYAGDLYAHVVQRVTANRVELAQMYSELGKAYTDQLGGSV
WIDEISRQSSRQFLGNIMHTTLNGDERLDAAYHSILLGRRSLYRNLEKLR
KFQRTRRLASHSAQQVRRYAQMFAPVNAFLGQHNLSTPLNYLLLGEFFSR
SLVAAGSSSRTQGAWRSSDSERRFAIFQQCVGKQTNAIDLLLSLLAQRQA
LSAYGQWLATQAGLVERVDAVLAAGSSKMSLQRLFFVTSLLVDCRSELGA
LQQDRKRQVTHATLRNSPEFLEAFRCRPGDVLYPQDQRCNPL*

GH23891.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9780-PA 592 CG9780-PA 1..592 1..592 3038 100 Plus