Clone GH23935 Report

Search the DGRC for GH23935

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:239
Well:35
Vector:pOT2
Associated Gene/TranscriptCG9813-RC
Protein status:GH23935.pep: gold
Sequenced Size:2173

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9813 2003-01-01 Sim4 clustering to Release 3
CG9813 2005-05-19 Blastp of sequenced clone
CG9813 2008-04-29 Release 5.5 accounting
CG9813 2008-08-15 Release 5.9 accounting
CG9813 2008-12-18 5.12 accounting

Clone Sequence Records

GH23935.complete Sequence

2173 bp (2173 high quality bases) assembled on 2005-05-19

GenBank Submission: BT023409

> GH23935.complete
AGCAGACCTGCCTACCTTTTCACGTAAACTAGAAATCTGAGAGATAAAAC
AAGTTACAAGTCAGTCTTTTACAGCTAGAACATCATGGCGACGAGGAATC
TGTTGGCCATCCTTCTTTTGGCCAGCATCTGCATGACCCAGGCATATCCG
GCTTTGTTGCCCTACATCTACAATCCTTCCAAGCGCAGCGGTGATACGGC
TTTCCCCCAAATCGAGGACGATGTAAGTGAACTGGACCAGCTGCGGAATG
AACCGGGAGCGGTGATGGCCAAGCGTCAGCACGATGGAAGTACAGCCCGC
ACCACCACTACCACCAAGGAGAGTGTCGAGGAGGTCGCCGCTGTTCCCGA
GCCAGGTGCACAACCAAATGCGAATATTATGCCCGACTTGGAGAGGCAGT
TGGAGGTGGCGACGCCTCTGATTTCCACCACTACAACCACTAGCACGTCG
GCCACCACCACTACGGCGACGTCCAAGGAGGAGGGCGAAAGGTCCCAGCT
GGAGGAGCCGAAGACGCAGATCAAAACCGTAGTGGAGCCGACGGCCCATG
CGAAGAACGCCAAAAGCTTCTTGCGTAGTCCGAATGGTCAGTACTCTTCG
TTCGACATGGCCCAGTATATTTTTTGGACTGGAGATGAAACAGCTGTGGT
AAAAGCCGTGGAAGAACTGGTTGAGGGGAAAGTGATCACTCGGGAGAGCG
CCCTGAAGTTCCTGCAGGACATTCGGCTGGGAATAGAGTTCTTGCAGCGG
TCCTATGCCAATCGAATTTTCCCCGAAGAGGTTCGCCAGAATCAGTTAAA
GCGCCACAGTCCCGCCATTACCACGCCCCCAGCATCCACTACGACCACGA
CGACAACAAGCACCACCACAACCACAGAAAAGCCATTCCCAGCAGTGCAC
GAATCCGGTTCGGAATCAGGAATCGAGCGAGGCGCCGCAGGAGTCCTGCC
CGCGAAGAGCTTCGATAGCTTCACCTTCTGGAACAAACTCAAAGTTTTGG
ACAGCGAGGCACAGCAAGATTTGAATGACTATGATGAGGGTCGGGCCAAG
ATTGTCGAGTACTTGTACAATGAATACTCCCTGGAGGAGATCCTTTACAA
ACTGGCAAAGGTAATGTTTGCTCAATCGCTTTCGCATGGCTCCGATGAGG
CCCAAATGGAGCTGCAGAAGCTTACGGAATTTCTAGAGCGCGAGGGTAAC
ATGGGTGTCATACCCATCGACTTGCAAAAGAAGGTTTTAAGAGTTTTGCT
GAGCGCATTGTCGGACACCCTGACCGAACATCCGGAGTTTCTGCCGGCGG
CGCGGGTTAATCTGGCCAACCCATTTTACAGGCTTCCAATACACGCCCCT
AGCCAATAAAGACACATTGGGCGGCCATCTCAGATTAATAGAAACCCCTA
TAAATATATATATGTTAACCCGCATAATTCGCATCAGCTAAATGGCAAGC
ATATACCCACTGATCGGCGCTACTCTGGGGAGGCGCTCTCTCGGATCTTC
GATCCAACTCGACCTAATTAAGTTCATCCGATCGATTGGCACCTTTCACC
TTCGTTTACGGATTAGCCTACGTGTAATATAGCAAAAGATACTCAAGTGA
TATTTTGTGGTCAGGTGGAGTCGGCGGCAGATGCAGGTATCACCAAACCA
AATCAAAAAAACTAAAGACACAACTGATGAGAGAGACTTGCGCCCCTTTG
AGCTTTTAAAATTAATATAGACTATCTATATGTATATGTCCATATGTCCA
TATGTCGATATGCATACGAATTGGCGCACTTGCTTATATTTGATATGAGT
TTGTTAGTTAGATACATTCCGAGGTTGAGATGTCGAGGTCGCTGGCAAAA
TCGATGGGCCACCAGAAACGACCGATTTGAAGCAGGAAAGGGCTCTGAGT
CCGCCTATATCAGTAGCTAATATGGATATAACTTGTAACCGCTCCACAGA
CGAGCGACTTTCGTGAATAGTTATTATTCTATTTGTTGTCCCCCTCCCTG
AATAATTGAGCGTTACAGGCATTATTGATGGATTGGTTAAACGATTGATT
GTGTTGCGAGTTACATATACGATATGCAAGTAAGAACTAGAACCTGTATC
AACAAATTATCGATTATACACTCAATATACATAAATATATATATATATAT
ATAAAAAAAAAAAAAAAAAAAAA

GH23935.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9813.a 2683 CG9813.a 1079..2682 553..2156 8020 100 Plus
CG9813.c 2670 CG9813.c 1066..2669 553..2156 8020 100 Plus
CG9813-RA 2637 CG9813-RA 1033..2636 553..2156 8020 100 Plus
CG9813.a 2683 CG9813.a 193..685 63..555 2465 100 Plus
CG9813.c 2670 CG9813.c 149..639 65..555 2455 100 Plus
CG9813-RA 2637 CG9813-RA 149..639 65..555 2455 100 Plus
CG9813.a 2683 CG9813.a 20..83 1..64 320 100 Plus
CG9813.c 2670 CG9813.c 20..83 1..64 320 100 Plus
CG9813-RA 2637 CG9813-RA 20..83 1..64 320 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9198289..9199190 2152..1241 4310 98.7 Minus
chr3R 27901430 chr3R 9203591..9203973 555..173 1915 100 Minus
chr3R 27901430 chr3R 9199627..9199961 1018..684 1645 99.4 Minus
chr3R 27901430 chr3R 9199253..9199385 1241..1109 665 100 Minus
chr3R 27901430 chr3R 9202720..9202850 684..554 625 98.5 Minus
chr3R 27901430 chr3R 9204192..9204303 172..61 560 100 Minus
chr3R 27901430 chr3R 9199456..9199552 1113..1017 485 100 Minus
chr3R 27901430 chr3R 9204880..9204943 64..1 305 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13373100..13374015 2156..1241 4580 100 Minus
3R 32079331 3R 13378402..13378784 555..173 1915 100 Minus
3R 32079331 3R 13374447..13374781 1018..684 1675 100 Minus
3R 32079331 3R 13374078..13374210 1241..1109 665 100 Minus
3R 32079331 3R 13377533..13377663 684..554 655 100 Minus
3R 32079331 3R 13379003..13379114 172..61 560 100 Minus
3R 32079331 3R 13374276..13374372 1113..1017 485 100 Minus
3R 32079331 3R 13379685..13379748 64..1 320 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13113931..13114846 2156..1241 4580 100 Minus
3R 31820162 3R 13119233..13119615 555..173 1915 100 Minus
3R 31820162 3R 13115278..13115612 1018..684 1675 100 Minus
3R 31820162 3R 13114909..13115041 1241..1109 665 100 Minus
3R 31820162 3R 13118364..13118494 684..554 655 100 Minus
3R 31820162 3R 13119834..13119945 172..61 560 100 Minus
3R 31820162 3R 13115107..13115203 1113..1017 485 100 Minus
3R 31820162 3R 13120516..13120579 64..1 320 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:24:47 has no hits.

GH23935.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:26:01 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9198321..9199190 1241..2120 98 <- Minus
chr3R 9199254..9199383 1111..1240 100 <- Minus
chr3R 9199459..9199550 1019..1110 100 <- Minus
chr3R 9199627..9199960 685..1018 99 <- Minus
chr3R 9202720..9202848 556..684 98 <- Minus
chr3R 9203591..9203973 173..555 100 <- Minus
chr3R 9204192..9204299 65..172 100 <- Minus
chr3R 9204880..9204943 1..64 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:35 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RA 868..1671 556..1359 100   Plus
CG9813-RA 1..471 85..555 100 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:01:49 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RA 1..471 85..555 100 -> Plus
CG9813-RA 868..1671 556..1359 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:35:11 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RF 1..1275 85..1359 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:42:19 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RA 1..471 85..555 100 -> Plus
CG9813-RA 868..1671 556..1359 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:44 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RF 1..1275 85..1359 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:45:52 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RB 332..823 65..555 99 -> Plus
CG9813-RB 18..81 1..64 100 -> Plus
CG9813-RB 1220..2816 556..2152 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:01:49 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RE 25..579 1..555 100 -> Plus
CG9813-RE 976..2572 556..2152 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:35:11 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RF 28..2179 1..2152 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:42:20 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RE 25..579 1..555 100 -> Plus
CG9813-RE 976..2572 556..2152 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:44 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
CG9813-RF 28..2179 1..2152 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:01 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13374079..13374208 1111..1240 100 <- Minus
3R 13374279..13374370 1019..1110 100 <- Minus
3R 13373104..13374015 1241..2152 100 <- Minus
3R 13374447..13374780 685..1018 100 <- Minus
3R 13377533..13377661 556..684 100 <- Minus
3R 13378402..13378784 173..555 100 <- Minus
3R 13379003..13379110 65..172 100 <- Minus
3R 13379685..13379748 1..64 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:01 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13374079..13374208 1111..1240 100 <- Minus
3R 13374279..13374370 1019..1110 100 <- Minus
3R 13373104..13374015 1241..2152 100 <- Minus
3R 13374447..13374780 685..1018 100 <- Minus
3R 13377533..13377661 556..684 100 <- Minus
3R 13378402..13378784 173..555 100 <- Minus
3R 13379003..13379110 65..172 100 <- Minus
3R 13379685..13379748 1..64 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:26:01 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13374079..13374208 1111..1240 100 <- Minus
3R 13374279..13374370 1019..1110 100 <- Minus
3R 13373104..13374015 1241..2152 100 <- Minus
3R 13374447..13374780 685..1018 100 <- Minus
3R 13377533..13377661 556..684 100 <- Minus
3R 13378402..13378784 173..555 100 <- Minus
3R 13379003..13379110 65..172 100 <- Minus
3R 13379685..13379748 1..64 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:35:11 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9199801..9199930 1111..1240 100 <- Minus
arm_3R 9200001..9200092 1019..1110 100 <- Minus
arm_3R 9198826..9199737 1241..2152 100 <- Minus
arm_3R 9200169..9200502 685..1018 100 <- Minus
arm_3R 9203255..9203383 556..684 100 <- Minus
arm_3R 9204124..9204506 173..555 100 <- Minus
arm_3R 9204725..9204832 65..172 100 <- Minus
arm_3R 9205407..9205470 1..64 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:21:22 Download gff for GH23935.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13119233..13119615 173..555 100 <- Minus
3R 13119834..13119941 65..172 100 <- Minus
3R 13120516..13120579 1..64 100   Minus
3R 13113935..13114846 1241..2152 100 <- Minus
3R 13114910..13115039 1111..1240 100 <- Minus
3R 13115110..13115201 1019..1110 100 <- Minus
3R 13115278..13115611 685..1018 100 <- Minus
3R 13118364..13118492 556..684 100 <- Minus

GH23935.pep Sequence

Translation from 84 to 1358

> GH23935.pep
MATRNLLAILLLASICMTQAYPALLPYIYNPSKRSGDTAFPQIEDDVSEL
DQLRNEPGAVMAKRQHDGSTARTTTTTKESVEEVAAVPEPGAQPNANIMP
DLERQLEVATPLISTTTTTSTSATTTTATSKEEGERSQLEEPKTQIKTVV
EPTAHAKNAKSFLRSPNGQYSSFDMAQYIFWTGDETAVVKAVEELVEGKV
ITRESALKFLQDIRLGIEFLQRSYANRIFPEEVRQNQLKRHSPAITTPPA
STTTTTTTSTTTTTEKPFPAVHESGSESGIERGAAGVLPAKSFDSFTFWN
KLKVLDSEAQQDLNDYDEGRAKIVEYLYNEYSLEEILYKLAKVMFAQSLS
HGSDEAQMELQKLTEFLEREGNMGVIPIDLQKKVLRVLLSALSDTLTEHP
EFLPAARVNLANPFYRLPIHAPSQ*

GH23935.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17388-PA 553 GF17388-PA 289..553 158..424 1165 87.6 Plus
Dana\GF17388-PA 553 GF17388-PA 1..170 1..169 583 81.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17060-PA 556 GG17060-PA 284..556 152..424 1313 96.7 Plus
Dere\GG17060-PA 556 GG17060-PA 1..157 1..157 604 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18549-PA 564 GH18549-PA 294..562 152..423 987 74.5 Plus
Dgri\GH18549-PA 564 GH18549-PA 1..171 1..169 416 67.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9813-PC 424 CG9813-PC 1..424 1..424 2141 100 Plus
CG9813-PF 424 CG9813-PF 1..424 1..424 2141 100 Plus
CG9813-PG 567 CG9813-PG 191..567 69..424 1391 77.2 Plus
CG9813-PD 556 CG9813-PD 180..556 69..424 1391 77.2 Plus
CG9813-PA 556 CG9813-PA 180..556 69..424 1391 77.2 Plus
CG9813-PB 556 CG9813-PB 180..556 69..424 1391 77.2 Plus
CG9813-PE 556 CG9813-PE 180..556 69..424 1391 77.2 Plus
CG9813-PG 567 CG9813-PG 1..183 1..185 791 87.6 Plus
CG9813-PD 556 CG9813-PD 1..169 1..169 786 94.7 Plus
CG9813-PA 556 CG9813-PA 1..169 1..169 786 94.7 Plus
CG9813-PB 556 CG9813-PB 1..169 1..169 786 94.7 Plus
CG9813-PE 556 CG9813-PE 1..169 1..169 786 94.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23248-PA 546 GI23248-PA 280..546 152..424 983 73.9 Plus
Dmoj\GI23248-PA 546 GI23248-PA 1..169 1..169 387 60.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23068-PA 567 GL23068-PA 298..567 152..424 1100 82.1 Plus
Dper\GL23068-PA 567 GL23068-PA 1..173 1..169 504 71.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22053-PB 420 GA22053-PB 1..420 1..424 1587 79.8 Plus
Dpse\GA22053-PA 563 GA22053-PA 294..563 152..424 1098 81.8 Plus
Dpse\GA22053-PA 563 GA22053-PA 1..173 1..169 504 71.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25945-PA 556 GM25945-PA 284..556 152..424 1323 97.4 Plus
Dsec\GM25945-PA 556 GM25945-PA 1..157 1..157 628 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20505-PA 556 GD20505-PA 284..556 152..424 1323 97.1 Plus
Dsim\GD20505-PA 556 GD20505-PA 1..157 1..157 628 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10745-PA 559 GJ10745-PA 294..559 152..424 1010 74.2 Plus
Dvir\GJ10745-PA 559 GJ10745-PA 1..172 1..169 413 60.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13351-PA 544 GK13351-PA 270..544 156..424 1017 72.7 Plus
Dwil\GK13351-PA 544 GK13351-PA 1..146 1..157 416 71.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24448-PA 556 GE24448-PA 284..556 152..424 1312 96.7 Plus
Dyak\GE24448-PA 556 GE24448-PA 1..169 1..169 609 91.1 Plus

GH23935.hyp Sequence

Translation from 84 to 1358

> GH23935.hyp
MATRNLLAILLLASICMTQAYPALLPYIYNPSKRSGDTAFPQIEDDVSEL
DQLRNEPGAVMAKRQHDGSTARTTTTTKESVEEVAAVPEPGAQPNANIMP
DLERQLEVATPLISTTTTTSTSATTTTATSKEEGERSQLEEPKTQIKTVV
EPTAHAKNAKSFLRSPNGQYSSFDMAQYIFWTGDETAVVKAVEELVEGKV
ITRESALKFLQDIRLGIEFLQRSYANRIFPEEVRQNQLKRHSPAITTPPA
STTTTTTTSTTTTTEKPFPAVHESGSESGIERGAAGVLPAKSFDSFTFWN
KLKVLDSEAQQDLNDYDEGRAKIVEYLYNEYSLEEILYKLAKVMFAQSLS
HGSDEAQMELQKLTEFLEREGNMGVIPIDLQKKVLRVLLSALSDTLTEHP
EFLPAARVNLANPFYRLPIHAPSQ*

GH23935.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9813-PC 424 CG9813-PC 1..424 1..424 2141 100 Plus
CG9813-PF 424 CG9813-PF 1..424 1..424 2141 100 Plus
CG9813-PD 556 CG9813-PD 180..556 69..424 1391 77.2 Plus
CG9813-PA 556 CG9813-PA 180..556 69..424 1391 77.2 Plus
CG9813-PB 556 CG9813-PB 180..556 69..424 1391 77.2 Plus
CG9813-PD 556 CG9813-PD 1..169 1..169 786 94.7 Plus
CG9813-PA 556 CG9813-PA 1..169 1..169 786 94.7 Plus