BDGP Sequence Production Resources |
Search the DGRC for GH23983
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 239 |
Well: | 83 |
Vector: | pOT2 |
Associated Gene/Transcript | vri-RA |
Protein status: | GH23983.pep: gold |
Sequenced Size: | 3462 |
Gene | Date | Evidence |
---|---|---|
vri | 2008-04-29 | Release 5.5 accounting |
vri | 2008-04-29 | Picked prior to 5.5 |
vri | 2008-08-15 | Release 5.9 accounting |
vri | 2008-12-18 | 5.12 accounting |
3462 bp assembled on 2007-11-16
GenBank Submission: BT031200
> GH23983.complete GCTTCTTTCGAAGCGGTTCAGGCGCTCGCGATAAGTCTCTAGACTATACT ACCAAACCATATAATATACAGCCGATCGGGTTCACAACCGCGATAAGCAA GTGAGAGCCGTCGGTCGAGCCGTTAAAAGCATTTCGGCCAAGTGCATCAA GCGCAGAAACGTCGCGTTAGCCAACTAAATCGGTCAAATTGGTTAAACCC CGAACTGCACAAGTGTTTGAAAAACAATTTTCAAAAGATTTGGATAATAT CTGCAAGCGCACACAAAAACAATGCCAATTTGTTCGTTCTAACAACAAAA CATTATGTCGATTGTCTGCACGCTGGAACAGAAAGTGAACTTTTTCAAAG CGGCTGCAACGACCAAAAATCTGTTGATACTCAAAAACAATACGGATACG AATTACATCAATAACTACAAGCAGGATAATCCCAGCAACAATAAATTTCC CCGCATCCAAGCTCAAAGCAACAACAGCCATCTGCAACACCAGCAGCAAC TGCAGCAGAAACTAGCGCAGCTGCATCACTACAGCCAGCAGAAGCTGAGC GGCAGCGACTTTCCCTACGGGCCACGCCCCCCCACCGGAGGCAAAGAGGA GAAGCTGCTCCTGCTAGCGCCGCCGGGCAAACTCTATCCGGAGGCGTCTG TGTCCACAGCAATGCCCGAGGTCCTCAGCGGCACGCCCACCAACAGCCAC AACAAAGCCAACATCGCCATGATGAACAACGTCCGGCTATCCAATATATC GCCGACTCTCTCGATGAACGGCAGCTCCAACGAGGCTTCTAACTTGCATC CGTTGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAAATGACAGCGGC ATGTCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTATGGAGATGG AATGATGGCCCAGTCGCCCTCACAGGGTGGCAATGGACCGCAGTCGGCGT TGACCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAACGCGAATTC ACCCCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCGGAGAAGGAA CAACGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACAATGACATGG TTCTGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAACCATGTGCTGAAG GCCCAGCTGGACGCCATACGCGACAAGTTCAACATCTCCGGCGAGAATCT GGTGAGCGTGGAGAAGATCCTCGCCTCGCTGCCCACCAGCGAACAGGTGC TGAGTAACACAAAGCGCGCCAAGATGAGCGGCAGTGGTGGCTCCTCCTCG GGCTCCTCGCCCTCGGGCAGTGGATCGGGCGAGGGATCGCCTCAAGGTGG CCACAATGGCTATCCGGTGGGTCCACCACTATCTCCACTGATCTACGGAC CCAATGGCAATGCCCGGCCAGAGGCCACGGTTAAGAGTGTCCACCACATA CATCATGCGGGTGTTGCGCCGCCACCAACGCACCTACAACAGTTGGTTGT GCCCCAGTCCCAGACACAGCATCTCTACCAGCCACAGCCGCAGCAGCATC AGCCGCATCAGCAGCAGCAGATTTCCCAGCCACCGCAGCAACAACAGCAG CAGCAGGAGCCAAGTCCCAGTGCCGGCTCCAGTTCGCCAGTCATCTCCGA TCCGCACAACCGCCCGCCAAGCACCACCATTGCCAATCTCCAGGTGCAAC TGCAGCAGGCACTAAACCGCAATGTCAGGCCCGAGGATCTGGACAGCTTG CGCAAGGTGGTGGCCGCCGGCGCTCTATACAATGCGGCAGCCGTGGTGGG AGCACCACCACCGCCACCATCTGCTGGTCTCTACGTGCCCGCTCCCAGCG CCTATAAGGATCACCTGGAAGCGGCTGCAGCCTGGAGCCACAATGTCGAG GCTGCTGTGAGCAGCAGTGCTGTGGATGCGGTCAGTAGCTCATCGGTGTC CGGCAGTGCGGCCAGTGTGCTGAATCTATCGCGTCGGGCCTGCTCACCCA GCTACGAGCACATGCTCTCCTCCACCACTTCCTCCACTCTTTCCTCGGCC TCCTCATCGGGAGCTGTTTCCGGCGATGATGAGCAGGAGCACGAACCAGC GCACATGGCTCCACTGCAGCTGCAGCGAAGCAGTCCGCAGCAGGGCAGCG ATGCCAACAACTGTCTGCCCCTCAAGCTGCGCCACAAGTCCCATCTCGGC GACAAGGATGCGGCGGCCACGGCGCTACTCTCACTGCAGCACATCAAGCA GGAGCCCAACTGCAGTCGGGCATCGCCGCCGGCTTGGAACGATGGCGGCG ACAATTCCAGCGACGAAAGGGACTCCGGCATCTCCATCGCCAGTGCGGAG TGGACGGCGCAGCTGCAGAGGAAGCTACTGGCGCCCAAGGAGGCCAATGT GGTAACCAGTGCCGAGCGCGATCAAATGCTCAAGTCGCAGCTGGAGCGCC TAGAGTCCGAGGTGGCCAGCATCAAGATGATCTTGGCGGAGTAAGCAAGC CCCTGTCCAAGCTGGACAGGATCACGACTAGGCGGATCAGGAGAGAGAGC GAAGAGACAGAGGCTCTGAAGGGATCAGAGTCGGGGGAGCAGAGCAGTAG ATGGCAAAGCAGAGAGTTCCATGGCGCCAGTAGTTCTCCTGGACAAAGAA GTTGGTTTAAGCATATGTTAGTAGAGATGTCCAAAACCGAGTGATAACTA TTAGATACCGATGCATGCATGTCTCCATCTCTATGTAGAACTCTAGGGCC AGGTCTGGACCACAAGGATTTGACACAAGACCCTGTGGCCCGAAACTGGC CAACACTTATCTGTGTGTATGTTTATCTATCCACTGTATTGAGTCTTGTA ATCGTGAATGTTTAACTATATAGATCTCGTCAACTCGGAGCTAAAAAAAA ATCCTTAGGGTCAGCCCAAAAGAATTTCTAATTTAACCTGTTTGTTGTAT ACACACAAGCTATTTGTTTGCATAGCTAGCTGGTGACCTGCGATGAGCAT CGGGGTCACCAGCCACGTTTGTTCTCTTATGCATCCCAAGTTTCCTTATG CACAGCGAAAGTGGAGAAGATAAAGAATTATTATGTTTGTAAGCAAACGT TACAAAGTATTTGCTGTTGTACATATTACACAATTAATTATATATACTAT ATAACTATACAGATATCTATATTCCTATCATGTACATAATTTTAGTTGCA AGCTAAGCTTATTTTATTTTATTTTATTTTACTTTGTATTGAGTACTATT ATTATTATTATTATTATGTAGTGAAACAAACATATACATTACACTTAAGA AACGCGTGAAGCACATTCAAAACGTGAGAGATGAAAGAAATCTGAAAAGA ATTGATGAATAAATTCTGCAATAAATAATTTTAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 5307120..5309709 | 795..3382 | 12870 | 99.9 | Plus |
chr2L | 23010047 | chr2L | 5304821..5305265 | 2..446 | 2225 | 100 | Plus |
chr2L | 23010047 | chr2L | 5306664..5307011 | 447..794 | 1740 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 5308021..5310613 | 795..3385 | 12885 | 99.9 | Plus |
2L | 23513712 | 2L | 5305722..5306166 | 2..446 | 2225 | 100 | Plus |
2L | 23513712 | 2L | 5307565..5307912 | 447..794 | 1740 | 100 | Plus |
3R | 32079331 | 3R | 22884829..22884895 | 3369..3435 | 260 | 92.5 | Plus |
2R | 25286936 | 2R | 2136067..2136125 | 3369..3427 | 220 | 91.5 | Plus |
Xmm | 1049845 | Xmm | 212034..212101 | 3436..3369 | 205 | 86.8 | Minus |
2R | 25286936 | 2R | 518278..518334 | 3369..3425 | 195 | 89.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 5308021..5310613 | 795..3385 | 12895 | 99.8 | Plus |
2L | 23513712 | 2L | 5305722..5306166 | 2..446 | 2225 | 100 | Plus |
2L | 23513712 | 2L | 5307565..5307912 | 447..794 | 1740 | 100 | Plus |
3R | 31820162 | 3R | 22625660..22625726 | 3369..3435 | 260 | 92.5 | Plus |
2R | 25260384 | 2R | 2136067..2136125 | 3369..3427 | 220 | 91.5 | Plus |
2R | 25260384 | 2R | 518278..518334 | 3369..3425 | 195 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2543 | 382..529 | 150 | 62 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 555..663 | 3128..3232 | 148 | 62.4 | Plus |
Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 6619..6739 | 3242..3365 | 143 | 61.6 | Plus |
Stalker | 7256 | Stalker STALKER 7256bp | 6513..6647 | 3242..3382 | 132 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6946 | 487..719 | 128 | 54.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1587 | 458..521 | 120 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2880..2987 | 406..514 | 120 | 60.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 5304819..5305265 | 1..446 | 99 | -> | Plus |
chr2L | 5306664..5306683 | 447..466 | 100 | == | Plus |
chr2L | 5306774..5307011 | 557..794 | 100 | -> | Plus |
chr2L | 5307120..5307847 | 795..1522 | 100 | == | Plus |
chr2L | 5307936..5309535 | 1611..3208 | 99 | == | Plus |
chr2L | 5309595..5309709 | 3268..3382 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RD | 1..2190 | 305..2494 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RD | 1..2190 | 305..2494 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 1..2190 | 305..2494 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 1..2190 | 305..2494 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 1..2190 | 305..2494 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 13..3397 | 1..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 13..3397 | 1..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 13..3397 | 1..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 13..3397 | 1..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vri-RA | 71..3455 | 1..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5305720..5306166 | 1..446 | 99 | -> | Plus |
2L | 5307565..5307912 | 447..794 | 100 | -> | Plus |
2L | 5308021..5310610 | 795..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5305720..5306166 | 1..446 | 99 | -> | Plus |
2L | 5307565..5307912 | 447..794 | 100 | -> | Plus |
2L | 5308021..5310610 | 795..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5305720..5306166 | 1..446 | 99 | -> | Plus |
2L | 5307565..5307912 | 447..794 | 100 | -> | Plus |
2L | 5308021..5310610 | 795..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 5305720..5306166 | 1..446 | 99 | -> | Plus |
arm_2L | 5307565..5307912 | 447..794 | 100 | -> | Plus |
arm_2L | 5308021..5310610 | 795..3382 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 5305720..5306166 | 1..446 | 99 | -> | Plus |
2L | 5307565..5307912 | 447..794 | 100 | -> | Plus |
2L | 5308021..5310610 | 795..3382 | 99 | Plus |
Translation from 304 to 2493
> GH23983.pep MSIVCTLEQKVNFFKAAATTKNLLILKNNTDTNYINNYKQDNPSNNKFPR IQAQSNNSHLQHQQQLQQKLAQLHHYSQQKLSGSDFPYGPRPPTGGKEEK LLLLAPPGKLYPEASVSTAMPEVLSGTPTNSHNKANIAMMNNVRLSNISP TLSMNGSSNEASNLHPLSMYGGSISPQSNDSGMSDSLGKYVPGSGYGDGM MAQSPSQGGNGPQSALTAAQKELFSQRKQREFTPDNKKDESYWDRRRRNN EAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIRDKFNISGENLV SVEKILASLPTSEQVLSNTKRAKMSGSGGSSSGSSPSGSGSGEGSPQGGH NGYPVGPPLSPLIYGPNGNARPEATVKSVHHIHHAGVAPPPTHLQQLVVP QSQTQHLYQPQPQQHQPHQQQQISQPPQQQQQQQEPSPSAGSSSPVISDP HNRPPSTTIANLQVQLQQALNRNVRPEDLDSLRKVVAAGALYNAAAVVGA PPPPPSAGLYVPAPSAYKDHLEAAAAWSHNVEAAVSSSAVDAVSSSSVSG SAASVLNLSRRACSPSYEHMLSSTTSSTLSSASSSGAVSGDDEQEHEPAH MAPLQLQRSSPQQGSDANNCLPLKLRHKSHLGDKDAAATALLSLQHIKQE PNCSRASPPAWNDGGDNSSDERDSGISIASAEWTAQLQRKLLAPKEANVV TSAERDQMLKSQLERLESEVASIKMILAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14387-PA | 733 | GF14387-PA | 1..733 | 1..729 | 2388 | 76.2 | Plus |
Dana\GF12658-PA | 197 | GF12658-PA | 110..175 | 227..292 | 148 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25066-PA | 723 | GG25066-PA | 1..723 | 1..729 | 3659 | 95.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13383-PA | 844 | GH13383-PA | 1..414 | 1..382 | 889 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vri-PF | 729 | CG14029-PF | 1..729 | 1..729 | 3750 | 100 | Plus |
vri-PD | 729 | CG14029-PD | 1..729 | 1..729 | 3750 | 100 | Plus |
vri-PA | 729 | CG14029-PA | 1..729 | 1..729 | 3750 | 100 | Plus |
vri-PE | 610 | CG14029-PE | 1..610 | 120..729 | 3125 | 100 | Plus |
vri-PC | 610 | CG14029-PC | 1..610 | 120..729 | 3125 | 100 | Plus |
CG14478-PD | 512 | CG14478-PD | 6..279 | 294..589 | 161 | 24.5 | Plus |
CG14478-PC | 512 | CG14478-PC | 6..279 | 294..589 | 161 | 24.5 | Plus |
CG14478-PB | 512 | CG14478-PB | 6..279 | 294..589 | 161 | 24.5 | Plus |
CG14478-PA | 512 | CG14478-PA | 6..279 | 294..589 | 161 | 24.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17625-PA | 814 | GI17625-PA | 135..814 | 114..729 | 1700 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19569-PA | 753 | GL19569-PA | 1..753 | 1..729 | 2252 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12711-PA | 757 | GA12711-PA | 1..757 | 1..729 | 2220 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18545-PA | 728 | GM18545-PA | 1..728 | 1..729 | 3763 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23334-PA | 728 | GD23334-PA | 1..728 | 1..729 | 3764 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17539-PA | 775 | GJ17539-PA | 124..775 | 118..729 | 1769 | 64.4 | Plus |
Dvir\GJ21676-PA | 192 | GJ21676-PA | 106..171 | 227..292 | 148 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24157-PA | 761 | GK24157-PA | 1..761 | 1..729 | 1956 | 62.4 | Plus |
Dwil\GK20980-PA | 196 | GK20980-PA | 109..174 | 227..292 | 153 | 43.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25380-PA | 730 | GE25380-PA | 1..730 | 1..729 | 3733 | 97.4 | Plus |
Translation from 304 to 2493
> GH23983.hyp MSIVCTLEQKVNFFKAAATTKNLLILKNNTDTNYINNYKQDNPSNNKFPR IQAQSNNSHLQHQQQLQQKLAQLHHYSQQKLSGSDFPYGPRPPTGGKEEK LLLLAPPGKLYPEASVSTAMPEVLSGTPTNSHNKANIAMMNNVRLSNISP TLSMNGSSNEASNLHPLSMYGGSISPQSNDSGMSDSLGKYVPGSGYGDGM MAQSPSQGGNGPQSALTAAQKELFSQRKQREFTPDNKKDESYWDRRRRNN EAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIRDKFNISGENLV SVEKILASLPTSEQVLSNTKRAKMSGSGGSSSGSSPSGSGSGEGSPQGGH NGYPVGPPLSPLIYGPNGNARPEATVKSVHHIHHAGVAPPPTHLQQLVVP QSQTQHLYQPQPQQHQPHQQQQISQPPQQQQQQQEPSPSAGSSSPVISDP HNRPPSTTIANLQVQLQQALNRNVRPEDLDSLRKVVAAGALYNAAAVVGA PPPPPSAGLYVPAPSAYKDHLEAAAAWSHNVEAAVSSSAVDAVSSSSVSG SAASVLNLSRRACSPSYEHMLSSTTSSTLSSASSSGAVSGDDEQEHEPAH MAPLQLQRSSPQQGSDANNCLPLKLRHKSHLGDKDAAATALLSLQHIKQE PNCSRASPPAWNDGGDNSSDERDSGISIASAEWTAQLQRKLLAPKEANVV TSAERDQMLKSQLERLESEVASIKMILAE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vri-PF | 729 | CG14029-PF | 1..729 | 1..729 | 3750 | 100 | Plus |
vri-PD | 729 | CG14029-PD | 1..729 | 1..729 | 3750 | 100 | Plus |
vri-PA | 729 | CG14029-PA | 1..729 | 1..729 | 3750 | 100 | Plus |
vri-PE | 610 | CG14029-PE | 1..610 | 120..729 | 3125 | 100 | Plus |
vri-PC | 610 | CG14029-PC | 1..610 | 120..729 | 3125 | 100 | Plus |