Clone GH23983 Report

Search the DGRC for GH23983

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:239
Well:83
Vector:pOT2
Associated Gene/Transcriptvri-RA
Protein status:GH23983.pep: gold
Sequenced Size:3462

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
vri 2008-04-29 Release 5.5 accounting
vri 2008-04-29 Picked prior to 5.5
vri 2008-08-15 Release 5.9 accounting
vri 2008-12-18 5.12 accounting

Clone Sequence Records

GH23983.complete Sequence

3462 bp assembled on 2007-11-16

GenBank Submission: BT031200

> GH23983.complete
GCTTCTTTCGAAGCGGTTCAGGCGCTCGCGATAAGTCTCTAGACTATACT
ACCAAACCATATAATATACAGCCGATCGGGTTCACAACCGCGATAAGCAA
GTGAGAGCCGTCGGTCGAGCCGTTAAAAGCATTTCGGCCAAGTGCATCAA
GCGCAGAAACGTCGCGTTAGCCAACTAAATCGGTCAAATTGGTTAAACCC
CGAACTGCACAAGTGTTTGAAAAACAATTTTCAAAAGATTTGGATAATAT
CTGCAAGCGCACACAAAAACAATGCCAATTTGTTCGTTCTAACAACAAAA
CATTATGTCGATTGTCTGCACGCTGGAACAGAAAGTGAACTTTTTCAAAG
CGGCTGCAACGACCAAAAATCTGTTGATACTCAAAAACAATACGGATACG
AATTACATCAATAACTACAAGCAGGATAATCCCAGCAACAATAAATTTCC
CCGCATCCAAGCTCAAAGCAACAACAGCCATCTGCAACACCAGCAGCAAC
TGCAGCAGAAACTAGCGCAGCTGCATCACTACAGCCAGCAGAAGCTGAGC
GGCAGCGACTTTCCCTACGGGCCACGCCCCCCCACCGGAGGCAAAGAGGA
GAAGCTGCTCCTGCTAGCGCCGCCGGGCAAACTCTATCCGGAGGCGTCTG
TGTCCACAGCAATGCCCGAGGTCCTCAGCGGCACGCCCACCAACAGCCAC
AACAAAGCCAACATCGCCATGATGAACAACGTCCGGCTATCCAATATATC
GCCGACTCTCTCGATGAACGGCAGCTCCAACGAGGCTTCTAACTTGCATC
CGTTGTCCATGTACGGAGGATCCATAAGTCCGCAGTCAAATGACAGCGGC
ATGTCCGACAGTCTGGGCAAATATGTCCCGGGAAGCGGCTATGGAGATGG
AATGATGGCCCAGTCGCCCTCACAGGGTGGCAATGGACCGCAGTCGGCGT
TGACCGCCGCCCAGAAAGAGCTCTTCTCGCAGCGAAAGCAACGCGAATTC
ACCCCGGACAACAAGAAGGACGAGAGCTACTGGGATCGCCGGAGAAGGAA
CAACGAGGCGGCCAAGCGGAGTCGAGAGAAGAGGCGCTACAATGACATGG
TTCTGGAGCAGCGCGTCATCGAGCTGACCAAAGAGAACCATGTGCTGAAG
GCCCAGCTGGACGCCATACGCGACAAGTTCAACATCTCCGGCGAGAATCT
GGTGAGCGTGGAGAAGATCCTCGCCTCGCTGCCCACCAGCGAACAGGTGC
TGAGTAACACAAAGCGCGCCAAGATGAGCGGCAGTGGTGGCTCCTCCTCG
GGCTCCTCGCCCTCGGGCAGTGGATCGGGCGAGGGATCGCCTCAAGGTGG
CCACAATGGCTATCCGGTGGGTCCACCACTATCTCCACTGATCTACGGAC
CCAATGGCAATGCCCGGCCAGAGGCCACGGTTAAGAGTGTCCACCACATA
CATCATGCGGGTGTTGCGCCGCCACCAACGCACCTACAACAGTTGGTTGT
GCCCCAGTCCCAGACACAGCATCTCTACCAGCCACAGCCGCAGCAGCATC
AGCCGCATCAGCAGCAGCAGATTTCCCAGCCACCGCAGCAACAACAGCAG
CAGCAGGAGCCAAGTCCCAGTGCCGGCTCCAGTTCGCCAGTCATCTCCGA
TCCGCACAACCGCCCGCCAAGCACCACCATTGCCAATCTCCAGGTGCAAC
TGCAGCAGGCACTAAACCGCAATGTCAGGCCCGAGGATCTGGACAGCTTG
CGCAAGGTGGTGGCCGCCGGCGCTCTATACAATGCGGCAGCCGTGGTGGG
AGCACCACCACCGCCACCATCTGCTGGTCTCTACGTGCCCGCTCCCAGCG
CCTATAAGGATCACCTGGAAGCGGCTGCAGCCTGGAGCCACAATGTCGAG
GCTGCTGTGAGCAGCAGTGCTGTGGATGCGGTCAGTAGCTCATCGGTGTC
CGGCAGTGCGGCCAGTGTGCTGAATCTATCGCGTCGGGCCTGCTCACCCA
GCTACGAGCACATGCTCTCCTCCACCACTTCCTCCACTCTTTCCTCGGCC
TCCTCATCGGGAGCTGTTTCCGGCGATGATGAGCAGGAGCACGAACCAGC
GCACATGGCTCCACTGCAGCTGCAGCGAAGCAGTCCGCAGCAGGGCAGCG
ATGCCAACAACTGTCTGCCCCTCAAGCTGCGCCACAAGTCCCATCTCGGC
GACAAGGATGCGGCGGCCACGGCGCTACTCTCACTGCAGCACATCAAGCA
GGAGCCCAACTGCAGTCGGGCATCGCCGCCGGCTTGGAACGATGGCGGCG
ACAATTCCAGCGACGAAAGGGACTCCGGCATCTCCATCGCCAGTGCGGAG
TGGACGGCGCAGCTGCAGAGGAAGCTACTGGCGCCCAAGGAGGCCAATGT
GGTAACCAGTGCCGAGCGCGATCAAATGCTCAAGTCGCAGCTGGAGCGCC
TAGAGTCCGAGGTGGCCAGCATCAAGATGATCTTGGCGGAGTAAGCAAGC
CCCTGTCCAAGCTGGACAGGATCACGACTAGGCGGATCAGGAGAGAGAGC
GAAGAGACAGAGGCTCTGAAGGGATCAGAGTCGGGGGAGCAGAGCAGTAG
ATGGCAAAGCAGAGAGTTCCATGGCGCCAGTAGTTCTCCTGGACAAAGAA
GTTGGTTTAAGCATATGTTAGTAGAGATGTCCAAAACCGAGTGATAACTA
TTAGATACCGATGCATGCATGTCTCCATCTCTATGTAGAACTCTAGGGCC
AGGTCTGGACCACAAGGATTTGACACAAGACCCTGTGGCCCGAAACTGGC
CAACACTTATCTGTGTGTATGTTTATCTATCCACTGTATTGAGTCTTGTA
ATCGTGAATGTTTAACTATATAGATCTCGTCAACTCGGAGCTAAAAAAAA
ATCCTTAGGGTCAGCCCAAAAGAATTTCTAATTTAACCTGTTTGTTGTAT
ACACACAAGCTATTTGTTTGCATAGCTAGCTGGTGACCTGCGATGAGCAT
CGGGGTCACCAGCCACGTTTGTTCTCTTATGCATCCCAAGTTTCCTTATG
CACAGCGAAAGTGGAGAAGATAAAGAATTATTATGTTTGTAAGCAAACGT
TACAAAGTATTTGCTGTTGTACATATTACACAATTAATTATATATACTAT
ATAACTATACAGATATCTATATTCCTATCATGTACATAATTTTAGTTGCA
AGCTAAGCTTATTTTATTTTATTTTATTTTACTTTGTATTGAGTACTATT
ATTATTATTATTATTATGTAGTGAAACAAACATATACATTACACTTAAGA
AACGCGTGAAGCACATTCAAAACGTGAGAGATGAAAGAAATCTGAAAAGA
ATTGATGAATAAATTCTGCAATAAATAATTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

GH23983.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
vri.d 3910 vri.d 54..3439 2..3385 16860 99.9 Plus
vri-RA 3910 vri-RA 54..3439 2..3385 16860 99.9 Plus
vri-RD 3436 vri-RD 54..3436 2..3382 16845 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5307120..5309709 795..3382 12870 99.9 Plus
chr2L 23010047 chr2L 5304821..5305265 2..446 2225 100 Plus
chr2L 23010047 chr2L 5306664..5307011 447..794 1740 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5308021..5310613 795..3385 12885 99.9 Plus
2L 23513712 2L 5305722..5306166 2..446 2225 100 Plus
2L 23513712 2L 5307565..5307912 447..794 1740 100 Plus
3R 32079331 3R 22884829..22884895 3369..3435 260 92.5 Plus
2R 25286936 2R 2136067..2136125 3369..3427 220 91.5 Plus
Xmm 1049845 Xmm 212034..212101 3436..3369 205 86.8 Minus
2R 25286936 2R 518278..518334 3369..3425 195 89.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5308021..5310613 795..3385 12895 99.8 Plus
2L 23513712 2L 5305722..5306166 2..446 2225 100 Plus
2L 23513712 2L 5307565..5307912 447..794 1740 100 Plus
3R 31820162 3R 22625660..22625726 3369..3435 260 92.5 Plus
2R 25260384 2R 2136067..2136125 3369..3427 220 91.5 Plus
2R 25260384 2R 518278..518334 3369..3425 195 89.4 Plus
Blast to na_te.dros performed 2019-03-16 11:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2543 382..529 150 62 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 555..663 3128..3232 148 62.4 Plus
Stalker4 7359 Stalker4 STALKER4 7359bp 6619..6739 3242..3365 143 61.6 Plus
Stalker 7256 Stalker STALKER 7256bp 6513..6647 3242..3382 132 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6946 487..719 128 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1587 458..521 120 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2880..2987 406..514 120 60.7 Plus

GH23983.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:21:13 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5304819..5305265 1..446 99 -> Plus
chr2L 5306664..5306683 447..466 100 == Plus
chr2L 5306774..5307011 557..794 100 -> Plus
chr2L 5307120..5307847 795..1522 100 == Plus
chr2L 5307936..5309535 1611..3208 99 == Plus
chr2L 5309595..5309709 3268..3382 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:41 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RD 1..2190 305..2494 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:02:10 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RD 1..2190 305..2494 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:39:51 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 1..2190 305..2494 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:47:32 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 1..2190 305..2494 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:56 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 1..2190 305..2494 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:47:52 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 13..3397 1..3382 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:02:10 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 13..3397 1..3382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:51 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 13..3397 1..3382 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:47:32 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 13..3397 1..3382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:56 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
vri-RA 71..3455 1..3382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:13 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5305720..5306166 1..446 99 -> Plus
2L 5307565..5307912 447..794 100 -> Plus
2L 5308021..5310610 795..3382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:13 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5305720..5306166 1..446 99 -> Plus
2L 5307565..5307912 447..794 100 -> Plus
2L 5308021..5310610 795..3382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:21:13 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5305720..5306166 1..446 99 -> Plus
2L 5307565..5307912 447..794 100 -> Plus
2L 5308021..5310610 795..3382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:51 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5305720..5306166 1..446 99 -> Plus
arm_2L 5307565..5307912 447..794 100 -> Plus
arm_2L 5308021..5310610 795..3382 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:54:07 Download gff for GH23983.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5305720..5306166 1..446 99 -> Plus
2L 5307565..5307912 447..794 100 -> Plus
2L 5308021..5310610 795..3382 99   Plus

GH23983.pep Sequence

Translation from 304 to 2493

> GH23983.pep
MSIVCTLEQKVNFFKAAATTKNLLILKNNTDTNYINNYKQDNPSNNKFPR
IQAQSNNSHLQHQQQLQQKLAQLHHYSQQKLSGSDFPYGPRPPTGGKEEK
LLLLAPPGKLYPEASVSTAMPEVLSGTPTNSHNKANIAMMNNVRLSNISP
TLSMNGSSNEASNLHPLSMYGGSISPQSNDSGMSDSLGKYVPGSGYGDGM
MAQSPSQGGNGPQSALTAAQKELFSQRKQREFTPDNKKDESYWDRRRRNN
EAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIRDKFNISGENLV
SVEKILASLPTSEQVLSNTKRAKMSGSGGSSSGSSPSGSGSGEGSPQGGH
NGYPVGPPLSPLIYGPNGNARPEATVKSVHHIHHAGVAPPPTHLQQLVVP
QSQTQHLYQPQPQQHQPHQQQQISQPPQQQQQQQEPSPSAGSSSPVISDP
HNRPPSTTIANLQVQLQQALNRNVRPEDLDSLRKVVAAGALYNAAAVVGA
PPPPPSAGLYVPAPSAYKDHLEAAAAWSHNVEAAVSSSAVDAVSSSSVSG
SAASVLNLSRRACSPSYEHMLSSTTSSTLSSASSSGAVSGDDEQEHEPAH
MAPLQLQRSSPQQGSDANNCLPLKLRHKSHLGDKDAAATALLSLQHIKQE
PNCSRASPPAWNDGGDNSSDERDSGISIASAEWTAQLQRKLLAPKEANVV
TSAERDQMLKSQLERLESEVASIKMILAE*

GH23983.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14387-PA 733 GF14387-PA 1..733 1..729 2388 76.2 Plus
Dana\GF12658-PA 197 GF12658-PA 110..175 227..292 148 42.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25066-PA 723 GG25066-PA 1..723 1..729 3659 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13383-PA 844 GH13383-PA 1..414 1..382 889 53 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
vri-PF 729 CG14029-PF 1..729 1..729 3750 100 Plus
vri-PD 729 CG14029-PD 1..729 1..729 3750 100 Plus
vri-PA 729 CG14029-PA 1..729 1..729 3750 100 Plus
vri-PE 610 CG14029-PE 1..610 120..729 3125 100 Plus
vri-PC 610 CG14029-PC 1..610 120..729 3125 100 Plus
CG14478-PD 512 CG14478-PD 6..279 294..589 161 24.5 Plus
CG14478-PC 512 CG14478-PC 6..279 294..589 161 24.5 Plus
CG14478-PB 512 CG14478-PB 6..279 294..589 161 24.5 Plus
CG14478-PA 512 CG14478-PA 6..279 294..589 161 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17625-PA 814 GI17625-PA 135..814 114..729 1700 62.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19569-PA 753 GL19569-PA 1..753 1..729 2252 71.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12711-PA 757 GA12711-PA 1..757 1..729 2220 71.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18545-PA 728 GM18545-PA 1..728 1..729 3763 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23334-PA 728 GD23334-PA 1..728 1..729 3764 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17539-PA 775 GJ17539-PA 124..775 118..729 1769 64.4 Plus
Dvir\GJ21676-PA 192 GJ21676-PA 106..171 227..292 148 42.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24157-PA 761 GK24157-PA 1..761 1..729 1956 62.4 Plus
Dwil\GK20980-PA 196 GK20980-PA 109..174 227..292 153 43.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25380-PA 730 GE25380-PA 1..730 1..729 3733 97.4 Plus

GH23983.hyp Sequence

Translation from 304 to 2493

> GH23983.hyp
MSIVCTLEQKVNFFKAAATTKNLLILKNNTDTNYINNYKQDNPSNNKFPR
IQAQSNNSHLQHQQQLQQKLAQLHHYSQQKLSGSDFPYGPRPPTGGKEEK
LLLLAPPGKLYPEASVSTAMPEVLSGTPTNSHNKANIAMMNNVRLSNISP
TLSMNGSSNEASNLHPLSMYGGSISPQSNDSGMSDSLGKYVPGSGYGDGM
MAQSPSQGGNGPQSALTAAQKELFSQRKQREFTPDNKKDESYWDRRRRNN
EAAKRSREKRRYNDMVLEQRVIELTKENHVLKAQLDAIRDKFNISGENLV
SVEKILASLPTSEQVLSNTKRAKMSGSGGSSSGSSPSGSGSGEGSPQGGH
NGYPVGPPLSPLIYGPNGNARPEATVKSVHHIHHAGVAPPPTHLQQLVVP
QSQTQHLYQPQPQQHQPHQQQQISQPPQQQQQQQEPSPSAGSSSPVISDP
HNRPPSTTIANLQVQLQQALNRNVRPEDLDSLRKVVAAGALYNAAAVVGA
PPPPPSAGLYVPAPSAYKDHLEAAAAWSHNVEAAVSSSAVDAVSSSSVSG
SAASVLNLSRRACSPSYEHMLSSTTSSTLSSASSSGAVSGDDEQEHEPAH
MAPLQLQRSSPQQGSDANNCLPLKLRHKSHLGDKDAAATALLSLQHIKQE
PNCSRASPPAWNDGGDNSSDERDSGISIASAEWTAQLQRKLLAPKEANVV
TSAERDQMLKSQLERLESEVASIKMILAE*

GH23983.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
vri-PF 729 CG14029-PF 1..729 1..729 3750 100 Plus
vri-PD 729 CG14029-PD 1..729 1..729 3750 100 Plus
vri-PA 729 CG14029-PA 1..729 1..729 3750 100 Plus
vri-PE 610 CG14029-PE 1..610 120..729 3125 100 Plus
vri-PC 610 CG14029-PC 1..610 120..729 3125 100 Plus