Clone GH24095 Report

Search the DGRC for GH24095

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:240
Well:95
Vector:pOT2
Associated Gene/TranscriptCG17230-RA
Protein status:GH24095.pep: gold
Preliminary Size:1717
Sequenced Size:1699

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17230 2001-01-01 Release 2 assignment
CG17230 2001-07-04 Blastp of sequenced clone
CG17230 2003-01-01 Sim4 clustering to Release 3
CG17230 2008-04-29 Release 5.5 accounting
CG17230 2008-08-15 Release 5.9 accounting
CG17230 2008-12-18 5.12 accounting

Clone Sequence Records

GH24095.complete Sequence

1699 bp (1699 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051601

> GH24095.complete
AAACTTCCAGCGTTCAGATCCCAGTATCTGCGGCGTGGTGGCAATACATA
TATCTGCTTTACAAAGGAGGAAGGAGCAGGACCAAGGGCCAAGGACCAAG
GATGTCGGGGCGCCTTAACCACCAGCACGCGGCGTATGCGCATCGCATGG
AACAGGAACACAACCGGGTGCAGGCCACACAGGCAGTGAACAGCTACTAC
AGCCATTGGGGTAAGGTCACATCACGCTTCGAAAACTGGACCAACAAAGA
GTACTATGAGAAGGCGGATCAACAGCTGCAATCCCGTCGCGATCAGCAGG
AGAAGGAGGCAGCTCTTAATGAACGTCGGTCCAGACTTCGCCAGCTTCTG
GCCTCGGAGAGCGAAGAGTACAACAACGAGATGGAGCGACGTCGCCGGCC
TCGGGAACCCGGTGGTGGAGACCTCCAGATGCTTGATCGGGTTAACCAGT
CGCTTAAGGAGCAAGAGCAACTGCGTCGCAAGCTCGAGATGGAAGCCAAG
TTGTACGGCCGCTGGCGTCATGGCGTCGACGATGAAAAGCTGCTCTACCA
GTCCAAGTCGGACAACGAAGTGCTGGCCAAGCTCAACTGGCTGGACCGCC
AGATCGAGAGTCAGCAGCAGCGCGAGGAGCAGCAGGCCCTGGCCGCGGAG
AGGCAGCTCCTGCTGCAGCAGGAAATCAGTCGCACGGAACAAGCTCAAAA
GGAGCGCCAGCAGATCCGGGAGCAACAATTGCGCGAACTGCGTGCTCTGC
AAGAATCCCACATGTCCGAGCTTCGTCTGCGACAGCAGGAGGCGGACAAG
TTGAAGGAGGAGGAGCAGCACTTCCAGCTCTTCCTGGGCGAACTGGACAA
AGAGCGGGAATTGCTGGAGGAGAGCAGTGCTCTGGTGCTCAAACAAGTCG
ATTCCGGACACGCCTTCAACCTCAAGAAGATTAAGGTCTTCATCCGGCAG
CGTAGTGAGGCCAGTCGGAAGCAGATCTCCCTGTGCATCAACATGCTGCA
TCGCATGGCCAAGTATGTGGTCAAGACGGAGGAGCTAAAGACCCTGCTGG
ACAAGTACCGCTCCCAGTTGGAGAACGAGGAACTGGCCTGCGCCCAGATC
GAAAGCATGTACGAGTCAGAGGCCAAGTACAACCTACAGCGCAGTGAGGA
AAACTGGCGGGAACAGCACTTGCAGCGCTACGGAGAGCTAAGCAAGTTCA
TTGACCAGGAGAAGGATTGCCTGGGCGCCATGCTTCAGGAGAATGTGAGC
CAGCAGCAGACATTGGTGGAGCTGAGGAGCCAACACCTGACTGGCATCGA
GCAGGCCAACAAGCAGCTGGAGCAACTTAGCCAGGTGCAGGCGGACGAGG
TGCCGGCACCATCGCAAAGTAATCTCAAGGAGGTCGAATCACAATCTTCA
GTTTCCGAGACTTCCGTGGAGGAGAATCTGCTGCCCAAGGTGAGCGATTC
GTTCTCCAATCTGAACCTGGATGTGTGGAAGGATCTGCCCCCAGCTCGCA
GTGAAGTCGACATGCAGCGCCTAAACCAATCCCGATCCCTCAGTGTGGTC
ACCTCGCAGACAGCCGCTCCGCCGAAGTTCGCACGCAAGCGTGTGGCCTG
GACCTAACATTTCAATTCCATATTATCGTCTTTGTTCCAGTTAAAATTTC
AATGGTATTAATAGACATATTGCTAGTTAAAAAAAAAAAAAAAAAAAAA

GH24095.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17230.g 2301 CG17230.g 78..1757 1..1680 8400 100 Plus
CG17230.e 3489 CG17230.e 78..1757 1..1680 8400 100 Plus
CG17230.f 2043 CG17230.f 78..1757 1..1680 8400 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7289507..7291120 65..1678 8010 99.8 Plus
chr3R 27901430 chr3R 7289176..7289242 1..67 335 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11464025..11465640 65..1680 8080 100 Plus
3R 32079331 3R 11463694..11463760 1..67 335 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 11204856..11206471 65..1680 8080 100 Plus
3R 31820162 3R 11204525..11204591 1..67 335 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:37:10 has no hits.

GH24095.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:37:56 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7289176..7289241 1..66 100 -> Plus
chr3R 7289509..7291120 67..1678 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:47 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 1..1506 102..1607 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:56 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 1..1506 102..1607 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:50:28 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RA 1..1506 102..1607 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:46 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 1..1506 102..1607 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:50:55 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RA 1..1506 102..1607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:21:48 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 59..1736 1..1678 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:56 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 59..1736 1..1678 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:50:28 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 59..1736 1..1678 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:56:46 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 59..1736 1..1678 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:50:55 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
CG17230-RB 59..1736 1..1678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:56 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11463694..11463759 1..66 100 -> Plus
3R 11464027..11465638 67..1678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:56 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11463694..11463759 1..66 100 -> Plus
3R 11464027..11465638 67..1678 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:37:56 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11463694..11463759 1..66 100 -> Plus
3R 11464027..11465638 67..1678 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:50:28 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7289416..7289481 1..66 100 -> Plus
arm_3R 7289749..7291360 67..1678 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:30 Download gff for GH24095.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11204858..11206469 67..1678 100   Plus
3R 11204525..11204590 1..66 100 -> Plus

GH24095.hyp Sequence

Translation from 2 to 1606

> GH24095.hyp
TSSVQIPVSAAWWQYIYLLYKGGRSRTKGQGPRMSGRLNHQHAAYAHRME
QEHNRVQATQAVNSYYSHWGKVTSRFENWTNKEYYEKADQQLQSRRDQQE
KEAALNERRSRLRQLLASESEEYNNEMERRRRPREPGGGDLQMLDRVNQS
LKEQEQLRRKLEMEAKLYGRWRHGVDDEKLLYQSKSDNEVLAKLNWLDRQ
IESQQQREEQQALAAERQLLLQQEISRTEQAQKERQQIREQQLRELRALQ
ESHMSELRLRQQEADKLKEEEQHFQLFLGELDKERELLEESSALVLKQVD
SGHAFNLKKIKVFIRQRSEASRKQISLCINMLHRMAKYVVKTEELKTLLD
KYRSQLENEELACAQIESMYESEAKYNLQRSEENWREQHLQRYGELSKFI
DQEKDCLGAMLQENVSQQQTLVELRSQHLTGIEQANKQLEQLSQVQADEV
PAPSQSNLKEVESQSSVSETSVEENLLPKVSDSFSNLNLDVWKDLPPARS
EVDMQRLNQSRSLSVVTSQTAAPPKFARKRVAWT*

GH24095.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG17230-PC 501 CG17230-PC 1..501 34..534 2530 100 Plus
CG17230-PB 501 CG17230-PB 1..501 34..534 2530 100 Plus
CG17230-PA 501 CG17230-PA 1..501 34..534 2530 100 Plus
rgn-PD 800 CG6014-PD 322..702 98..469 188 23.6 Plus
rgn-PA 800 CG6014-PA 322..702 98..469 188 23.6 Plus
rgn-PD 800 CG6014-PD 411..753 73..432 157 23.1 Plus

GH24095.pep Sequence

Translation from 101 to 1606

> GH24095.pep
MSGRLNHQHAAYAHRMEQEHNRVQATQAVNSYYSHWGKVTSRFENWTNKE
YYEKADQQLQSRRDQQEKEAALNERRSRLRQLLASESEEYNNEMERRRRP
REPGGGDLQMLDRVNQSLKEQEQLRRKLEMEAKLYGRWRHGVDDEKLLYQ
SKSDNEVLAKLNWLDRQIESQQQREEQQALAAERQLLLQQEISRTEQAQK
ERQQIREQQLRELRALQESHMSELRLRQQEADKLKEEEQHFQLFLGELDK
ERELLEESSALVLKQVDSGHAFNLKKIKVFIRQRSEASRKQISLCINMLH
RMAKYVVKTEELKTLLDKYRSQLENEELACAQIESMYESEAKYNLQRSEE
NWREQHLQRYGELSKFIDQEKDCLGAMLQENVSQQQTLVELRSQHLTGIE
QANKQLEQLSQVQADEVPAPSQSNLKEVESQSSVSETSVEENLLPKVSDS
FSNLNLDVWKDLPPARSEVDMQRLNQSRSLSVVTSQTAAPPKFARKRVAW
T*

GH24095.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18372-PA 501 GF18372-PA 1..501 1..501 1850 78.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18178-PA 501 GG18178-PA 1..501 1..501 2301 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17325-PA 510 GH17325-PA 1..510 1..501 1681 64.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17230-PC 501 CG17230-PC 1..501 1..501 2530 100 Plus
CG17230-PB 501 CG17230-PB 1..501 1..501 2530 100 Plus
CG17230-PA 501 CG17230-PA 1..501 1..501 2530 100 Plus
rgn-PD 800 CG6014-PD 322..702 65..436 188 23.6 Plus
rgn-PA 800 CG6014-PA 322..702 65..436 188 23.6 Plus
rgn-PC 808 CG6014-PC 330..710 65..436 188 23.6 Plus
rgn-PB 808 CG6014-PB 330..710 65..436 188 23.6 Plus
Slik-PA 1300 CG4527-PA 945..1297 152..472 174 23.4 Plus
Slik-PF 1635 CG4527-PF 945..1298 152..472 173 23.4 Plus
Slik-PB 1703 CG4527-PB 945..1298 152..472 173 23.4 Plus
Slik-PD 1703 CG4527-PD 945..1298 152..472 173 23.4 Plus
Slik-PE 1342 CG4527-PE 945..1309 152..480 167 22.9 Plus
CLIP-190-PN 1598 CG5020-PN 472..938 49..476 163 25.8 Plus
CLIP-190-PR 1601 CG5020-PR 475..941 49..476 163 25.8 Plus
CLIP-190-PP 1623 CG5020-PP 497..963 49..476 163 25.8 Plus
CLIP-190-PC 1652 CG5020-PC 526..992 49..476 163 25.8 Plus
CLIP-190-PS 1653 CG5020-PS 527..993 49..476 163 25.8 Plus
CLIP-190-PM 1668 CG5020-PM 542..1008 49..476 163 25.8 Plus
CLIP-190-PB 1689 CG5020-PB 563..1029 49..476 163 25.8 Plus
CLIP-190-PA 1690 CG5020-PA 564..1030 49..476 163 25.8 Plus
rgn-PD 800 CG6014-PD 411..753 40..399 157 23.1 Plus
rgn-PA 800 CG6014-PA 411..753 40..399 157 23.1 Plus
rgn-PC 808 CG6014-PC 419..761 40..399 157 23.1 Plus
rgn-PB 808 CG6014-PB 419..761 40..399 157 23.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10288-PA 507 GI10288-PA 1..507 1..501 1694 64 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12376-PA 501 GL12376-PA 1..500 1..500 1763 68.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14404-PA 501 GA14404-PA 1..500 1..500 1763 68.5 Plus
Dpse\GA23215-PA 501 GA23215-PA 1..500 1..500 1759 68.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23947-PA 501 GM23947-PA 1..501 1..501 2546 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11096-PA 496 GJ11096-PA 3..496 2..501 1701 66.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11298-PA 504 GK11298-PA 1..504 1..501 1710 66.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26099-PA 501 GE26099-PA 1..501 1..501 2242 93.4 Plus