Clone GH24192 Report

Search the DGRC for GH24192

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:241
Well:92
Vector:pOT2
Associated Gene/TranscriptCG13671-RA
Protein status:GH24192.pep: gold
Preliminary Size:2649
Sequenced Size:2669

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13671 2001-01-01 Release 2 assignment
CG13671 2001-10-10 Blastp of sequenced clone
CG13671 2003-01-01 Sim4 clustering to Release 3
CG13671 2008-04-29 Release 5.5 accounting
CG13671 2008-08-15 Release 5.9 accounting
CG13671 2008-12-18 5.12 accounting

Clone Sequence Records

GH24192.complete Sequence

2669 bp (2669 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060777

> GH24192.complete
GGAAACGCTACTTCGTTTACGCGTCGCAGTGGGTTTAGAACAGCCGTTGT
TGATAATTTAATTAACAGAGTTTTAATTAAGAAAGTAAACAGCAGAAGTG
ATTAATTAATATCACTTGGAATCGATAGTGCTGCTATCGATAACTGCGGG
CAGTGTGGGGAAGAAAGTAAAGCTTAATGAGACCGTAACCATTTAGTGCT
TAACAACGTTTCTTTTGCATTTCCAAAACAAGTTATTTTTGAATATTGAA
CCTATTTAAAGAATTATTTTCAAATTTAAAATTTAGATTTAGTCATTACT
TATAAATTATTATTATTAACAACACTACCGACGTTACCAGTGTGGCCATC
CTCGCGGCAAACATCTGTTCACGGCGGTTGCTGTTGTGTTGTTCTTAACA
TCTAATTAGCTTCCCACCGGTTGCAATGAAAATAATTTTGAGCCTGCTGC
TCCTGGCTCTCTCTATCGCTCAGTTGGACGCCTCAAGGTCAGCCACATCC
GACCAGGCTCCCATTGTCGAGTGTCCCGGACGCAGTGTTCCCCAGCTCCG
TGCGGAAGCGTCAGAGTCAGAGATCTCGCTGCTATTTTACTACGTGTCCT
GGGCCAGCGAAGCACGGCAGGCACGACTGGTCTACAATGGACTGGCCCAC
TATTACCAGGAGTATGGCTTCTTTGGAGCCATCGATTGCTGGCACTTGCA
GTGCAATTGCAGCCGTACTTTGATGCCGGCACCAGGAGTCGCCGGCGCAG
GAGGTTATCCTGACAAATGGCCCACGCTGATCGTGCGCTACGGCCAAAAG
CAGTTACTCCAGTACCAGGGCTCGTGGAGCTTTGAAGATCTCGCCCGGTT
CATGAATAACCTGCTTCAGCCACTGGACCGGGCACACAGTAGTCAGGATC
TCGCCGCCATTCGGAAGCACTCGGATGCGGTGGTTTTGGGTCTGCTTGAC
TCGCCAGACGACAAGGCCTACAATCTTTACTTGGCTGCCGGTCTGCGCTG
GCTGGAACTGGATCCGGAGAGGAATATCCGCTTCACCGTGTACTTTGGCA
ACAGTGCCAGGAAGATGTTGAAGTCCTCGGAGGCCAAGCTGCCCCAGTTT
GTAGTTATCGACAGCCGAAATGGAGTTCATACGTTTAATGGTACATCTGG
AGTATGGAAGACCATCGACATTCTGCGCTGGGTACGGAGCACACTCAAAA
ATATGTCGCTGTTCTCCAATGGCTATGGCACTCCTATGACCATCGCCATG
AAGGCACGACATGTCCCCGTGCTGGCTATGGGAGTTCGAATGAACCAATA
TCACCATGCTAGCGTCATGGGCGAGGAGATGGCTTACGCTCAAAAAAAGC
AGTCGGAGGGGTGCGAAGACTACTGGAAAAAATTCGATAAACAATCTGAA
GACATATCCTCCTCCCTAAATCAAGTTCCCAAGGAGCTGTTTGGGGATGG
TGAACAAACCCGGACATGTTACCCGGCCTGGAGTAAAAACAAGACCACAC
TTAAGAACTATTATCGGATTAATAGGTATCTAAACCACCTATGGAGGCAG
TACTCGCACCAGAACCATCCGAGTTATCGAAACGTCCCCCACTTGCTGCG
GCTTCACTCCAGAAACCTTTGCCTGGCACACTCACAGCATGGAACGCCGG
CCATAAAAATCGGCATTGCCAAAATGGTAACCAAATATGGCCAGCTCATT
TGGCAGCACTCGACGGAGCGCGCAGCCCACAATCGGTCGCTGGGCGTGGT
GATCTTCGATTCTGTGAAATATAGAGACTATCTACACCAGCTTGGCATTC
AGCAAACCCATCAGCAGGTGCAGGTTTTCATCTTGGATGCGGCTGAAGAG
TCACTGTATGTTATGCCACAGCAACACACATTCTCCTACGTAGCTCTTAA
AGATTTTATACGGCAGTTTTACGCCAGAACATTGCCAAGGACTCACAAAA
ATGCTCTTGCCATGATGGAATCTGGGTTCAGTAGAAAATACAATAGACAG
ATGCTGTTGCAGGCAATCCAGCGACCAAATGTCACCAATGTGGTATTTAT
GCATCGTCCTGACTGCGCTCTGTCAGCCGTTCTATCCCAAGCATTTCTGC
AGGTTTCGGCGCTGCTCGGCAGCCCCGAGGTGCACTTTGTACGCTTCGAT
AGCCAGGCTAATGATCTGCCCTGGGAGTTGGCCATGCCAACCACGCCGTC
TCTAATTGTCTTCCCCCAGGCAAAGAGCGCGGAATCCGTGGTTTTCCCAA
CCGATGTGCGGATTGATGTGCAAAACGTTTTTGCATTTGTGATCGCCCAA
TTGGAGCCGGAGCAGCAGGTGCGTTCGGTCTTGACCAGCTGCAGGCGGCG
GATGCGTAACGTTAGGAGCTGTCTTGACTTTGCCCGCAACCTGGTACTCC
AGCACGTTAACCAATATCTCAAATTCTGGGATATCTATGAACGGGAGCGG
GACGACATCCTTTCGCACCTAAGGGAGTTCAACAACTTGCACATGTCCAT
CGAAAGCAGCATTCGATTATAGCGAAATCCCCCTGAAATATAACTTTAGT
TAAAAGTTACCGTTGATATTTCCTGTAGATCGTAAGGCTAAAGTTGTCTC
TTCATAAGATATTTAACACTCATAGTTGTATAAATATACATACATATAAA
CAAAAAAAAAAAAAAAAAA

GH24192.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13671-RA 2656 CG13671-RA 1..2654 1..2654 13270 100 Plus
CG7197-RA 1303 CG7197-RA 1..107 107..1 535 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8291684..8294344 1..2651 13000 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8299691..8302344 1..2654 13270 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8292791..8295444 1..2654 13270 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:36:30 has no hits.

GH24192.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:37:39 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8291684..8291935 1..252 99 == Plus
chr3L 8292013..8294344 320..2651 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:49 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2097 426..2522 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:19 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2097 426..2522 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:50:49 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2097 426..2522 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:11 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2097 426..2522 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:46 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2097 426..2522 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:56 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2651 1..2651 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:18 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2651 1..2651 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:50:49 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2278 374..2651 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:13 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2651 1..2651 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:46 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
CG13671-RA 1..2278 374..2651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:39 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8299691..8302341 1..2651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:39 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8299691..8302341 1..2651 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:39 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8299691..8302341 1..2651 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:50:49 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8292791..8295441 1..2651 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:11 Download gff for GH24192.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8292791..8295441 1..2651 100   Plus

GH24192.pep Sequence

Translation from 425 to 2521

> GH24192.pep
MKIILSLLLLALSIAQLDASRSATSDQAPIVECPGRSVPQLRAEASESEI
SLLFYYVSWASEARQARLVYNGLAHYYQEYGFFGAIDCWHLQCNCSRTLM
PAPGVAGAGGYPDKWPTLIVRYGQKQLLQYQGSWSFEDLARFMNNLLQPL
DRAHSSQDLAAIRKHSDAVVLGLLDSPDDKAYNLYLAAGLRWLELDPERN
IRFTVYFGNSARKMLKSSEAKLPQFVVIDSRNGVHTFNGTSGVWKTIDIL
RWVRSTLKNMSLFSNGYGTPMTIAMKARHVPVLAMGVRMNQYHHASVMGE
EMAYAQKKQSEGCEDYWKKFDKQSEDISSSLNQVPKELFGDGEQTRTCYP
AWSKNKTTLKNYYRINRYLNHLWRQYSHQNHPSYRNVPHLLRLHSRNLCL
AHSQHGTPAIKIGIAKMVTKYGQLIWQHSTERAAHNRSLGVVIFDSVKYR
DYLHQLGIQQTHQQVQVFILDAAEESLYVMPQQHTFSYVALKDFIRQFYA
RTLPRTHKNALAMMESGFSRKYNRQMLLQAIQRPNVTNVVFMHRPDCALS
AVLSQAFLQVSALLGSPEVHFVRFDSQANDLPWELAMPTTPSLIVFPQAK
SAESVVFPTDVRIDVQNVFAFVIAQLEPEQQVRSVLTSCRRRMRNVRSCL
DFARNLVLQHVNQYLKFWDIYERERDDILSHLREFNNLHMSIESSIRL*

GH24192.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10873-PA 698 GF10873-PA 1..698 1..698 2855 74.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14297-PA 696 GG14297-PA 1..696 1..698 3412 91.3 Plus
Dere\GG14298-PA 696 GG14298-PA 1..696 1..698 3412 91.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16096-PA 699 GH16096-PA 18..699 27..698 2165 58.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13671-PA 698 CG13671-PA 1..698 1..698 3661 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:37:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12360-PA 674 GI12360-PA 1..674 41..698 1981 55.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22546-PA 717 GL22546-PA 19..717 20..698 2440 64.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12449-PA 717 GA12449-PA 19..717 20..698 2441 64.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25039-PA 698 GM25039-PA 1..698 1..698 3670 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14075-PA 698 GD14075-PA 18..698 18..698 3458 96 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12252-PA 700 GJ12252-PA 18..700 27..698 2060 56 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17192-PA 696 GK17192-PA 1..696 1..698 2450 65.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20726-PA 699 GE20726-PA 1..699 1..698 3437 91.6 Plus

GH24192.hyp Sequence

Translation from 425 to 2521

> GH24192.hyp
MKIILSLLLLALSIAQLDASRSATSDQAPIVECPGRSVPQLRAEASESEI
SLLFYYVSWASEARQARLVYNGLAHYYQEYGFFGAIDCWHLQCNCSRTLM
PAPGVAGAGGYPDKWPTLIVRYGQKQLLQYQGSWSFEDLARFMNNLLQPL
DRAHSSQDLAAIRKHSDAVVLGLLDSPDDKAYNLYLAAGLRWLELDPERN
IRFTVYFGNSARKMLKSSEAKLPQFVVIDSRNGVHTFNGTSGVWKTIDIL
RWVRSTLKNMSLFSNGYGTPMTIAMKARHVPVLAMGVRMNQYHHASVMGE
EMAYAQKKQSEGCEDYWKKFDKQSEDISSSLNQVPKELFGDGEQTRTCYP
AWSKNKTTLKNYYRINRYLNHLWRQYSHQNHPSYRNVPHLLRLHSRNLCL
AHSQHGTPAIKIGIAKMVTKYGQLIWQHSTERAAHNRSLGVVIFDSVKYR
DYLHQLGIQQTHQQVQVFILDAAEESLYVMPQQHTFSYVALKDFIRQFYA
RTLPRTHKNALAMMESGFSRKYNRQMLLQAIQRPNVTNVVFMHRPDCALS
AVLSQAFLQVSALLGSPEVHFVRFDSQANDLPWELAMPTTPSLIVFPQAK
SAESVVFPTDVRIDVQNVFAFVIAQLEPEQQVRSVLTSCRRRMRNVRSCL
DFARNLVLQHVNQYLKFWDIYERERDDILSHLREFNNLHMSIESSIRL*

GH24192.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13671-PA 698 CG13671-PA 1..698 1..698 3661 100 Plus