Clone GH24245 Report

Search the DGRC for GH24245

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:242
Well:45
Vector:pOT2
Associated Gene/TranscriptCG4610-RA
Protein status:GH24245.pep: gold
Preliminary Size:2012
Sequenced Size:2100

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4610 2002-01-01 Sim4 clustering to Release 2
CG4610 2002-05-18 Blastp of sequenced clone
CG4610 2003-01-01 Sim4 clustering to Release 3
CG4610 2008-04-29 Release 5.5 accounting
CG4610 2008-08-15 Release 5.9 accounting
CG4610 2008-12-18 5.12 accounting

Clone Sequence Records

GH24245.complete Sequence

2100 bp (2100 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118816

> GH24245.complete
TGTTGTTATTGTGGGGTGTTTTGAAAATGCAGCAGCTACGAAATGCCGTG
GTGCACGGTTGGGCTAGAAGGATAAGGGCCCCATCGAGAAGTGCCCACAG
TGCCGGTGCCGATATCTACGACGTGGTGGTCATCGGAGGCGGACATGCCG
GAACAGAGGCCTCGGCGGCAGCTGCTCGCATGGGATCACGCACCCTGCTG
CTAACCCACAAACTGGAGACTATTGGCGAGATGTCCTGCAACCCGTCGTT
CGGTGGCATTGGCAAGGGTCACCTGATGCGCGAGGTGGATGCCCTGGATG
GCGTATGTGCCCGCTGCTGCGATGTTTCCGGAGTACACTACAAGGTGCTC
AATAGACGGCGCGGTCCAGCTGTTTGGGGGCCCAGGGCGCAGATCGATCG
CCAGCTGTACAAAAAGGCTGTGCAGCAGGAACTGCACAGCACCCCCAATC
TGGAGATTCGAGCAGCCGCTGTGGACAACCTGCTGATAGAGGATGAACAG
GATACCCAAGCCCGCCGTTGTACCGGCGTCCTTTTGGCCAACGGAGAAGT
GGTACGTAGTCGATCCGTGGTACTCACCACGGGAACATTCCTGCGGGCAC
ACATAAACATCGGACTCGAGGTGCGACCGGCCGGCCGAATTGGAGACGCT
CCAGCCAAAGCGCTGGGCGAGGCGATCGACAGATTAGGTTTTCGCATGGG
GAGGCTGAAAACTGGAACTCCGCCTAGAATAGCAAAGGACAGTGTGGATT
TCTCACAGCTCCAAAGGCACGAAGGTGATGATCCGCCTATGCCTTTCTCC
TTTCTCAACAAAGACGTTTGGCTACCCGCCAAGGACCAACTACCCTGCTA
CCTTACCTACACCACACCAAAAGTCAGCGACATTGTGCGCGACAATCTTC
ATGTAAATCGCCATGTCACCGAGGAGATTACCGGCCCACGCTACTGCCCC
TCGATTGAGTCCAAGATCCTGAGGTTCGGCGCGAAGGTACATCAGGTGTG
GTTAGAGCCAGAAGGTCTGGACAGTTCCTTAGTGTATCCCCAAGGAATCT
CCTGCACGCTGCCCCACGATCAGCAAGTAGAGCTGGTCCATGCCATCCAA
GGTCTGGAAAAGGCGGTAGTTGTCCAGCCCGGTTATGGCGTGGAGTACGA
CTTCATAGACCCCCGTGAGTTGTATCCCACACTGGAGACGAAACGAGTGC
CAGGACTCTTCTTTGCTGGCCAGATAAATGGAACTACGGGCTATGAAGAA
GCAGCCGCTCAGGGCATCATAGCTGGTGCCAATGCAGCTGGAAAAACCAG
GCATAGCGATGGAAGGCAACTAACCATAAGTCGAACTGAGGGCTACATAG
GCGTGTTGATCGATGACCTGACTTCGTTAGGCACAAATGAACCCTACCGC
ATGTTTACAAGTCGGGCAGAGTTTCGGTTGTCACTTCGTCCGGACAATGC
CGACATGCGTCTCACACAAAAGGGCTACGAATTTGGACTTGTATCTTCAG
ATCGCTACCAGCACTTCCAGCAAACCGAGGCGAGATTGCAATCGGCCATT
GAGTCCTTGCGGCGATTGCGGAAGCACACTCATTACTGGCGACAAGCACT
CAATCTGCCCAAGGCCAAAGCTTCGGTGGAGAAATCGGCTTTCGACATGC
TGGGAATTCCAGCAGATAACATCACTATCGAGCAGCTAATCCATCTTCAT
CCCAACGAACTGAGCTGGCTTAAAGGCGAGCGAAATCTGGCCGAAAGGCT
GAAAATAGAGGCACTGTATTCGTTCTTTGTCGATGAACAGCAACGAGATG
TGGAGGATGTACGGCGTGAGGAGCGCCTGTCCATTCCCGCCGACATTGAT
TACTTCTCAAAGTCCCTAAGCTTGTCCAACGAGGAGCGACAGAAGCTGAC
GCTCATCCAGCCACAGACAATTGCGGCGGCTAGTAGAATTCAAGGAGTGA
CTCCATCGACAATTGTAAGGATTCTTAAATACGTTAAAAAAGCGGAGCTA
GCAAAAGCCTAGGTTACGATTATGTAAAAATATATGTAATATTTGATCGC
AGAGTCCCAAACCAAAAAAGAACTTGCAAAGTAAAAAAAAAAAAAAAAAA

GH24245.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4610-RA 2082 CG4610-RA 1..2082 1..2082 10410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18378758..18380839 1..2082 10200 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22492214..22494296 1..2083 10415 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22493413..22495495 1..2083 10415 100 Plus
Blast to na_te.dros performed on 2019-03-15 17:27:34 has no hits.

GH24245.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:28:20 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18378758..18380839 1..2082 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:52 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..1986 27..2012 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:39 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..1986 27..2012 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:37:39 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..1986 27..2012 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:37:59 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..1986 27..2012 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:50 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..1986 27..2012 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:21:03 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..2082 1..2082 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:39 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..2082 1..2082 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:37:39 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 18..2099 1..2082 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:37:59 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 1..2082 1..2082 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:50 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
CG4610-RA 18..2099 1..2082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:20 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22492214..22494295 1..2082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:20 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22492214..22494295 1..2082 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:20 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22492214..22494295 1..2082 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:37:39 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18379719..18381800 1..2082 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:10:16 Download gff for GH24245.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22493413..22495494 1..2082 100   Plus

GH24245.hyp Sequence

Translation from 2 to 2011

> GH24245.hyp
LLLWGVLKMQQLRNAVVHGWARRIRAPSRSAHSAGADIYDVVVIGGGHAG
TEASAAAARMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDALDG
VCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNL
EIRAAAVDNLLIEDEQDTQARRCTGVLLANGEVVRSRSVVLTTGTFLRAH
INIGLEVRPAGRIGDAPAKALGEAIDRLGFRMGRLKTGTPPRIAKDSVDF
SQLQRHEGDDPPMPFSFLNKDVWLPAKDQLPCYLTYTTPKVSDIVRDNLH
VNRHVTEEITGPRYCPSIESKILRFGAKVHQVWLEPEGLDSSLVYPQGIS
CTLPHDQQVELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLETKRVP
GLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHSDGRQLTISRTEGYIG
VLIDDLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSD
RYQHFQQTEARLQSAIESLRRLRKHTHYWRQALNLPKAKASVEKSAFDML
GIPADNITIEQLIHLHPNELSWLKGERNLAERLKIEALYSFFVDEQQRDV
EDVRREERLSIPADIDYFSKSLSLSNEERQKLTLIQPQTIAAASRIQGVT
PSTIVRILKYVKKAELAKA*

GH24245.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4610-PA 661 CG4610-PA 1..661 9..669 3411 100 Plus

GH24245.pep Sequence

Translation from 26 to 2011

> GH24245.pep
MQQLRNAVVHGWARRIRAPSRSAHSAGADIYDVVVIGGGHAGTEASAAAA
RMGSRTLLLTHKLETIGEMSCNPSFGGIGKGHLMREVDALDGVCARCCDV
SGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQELHSTPNLEIRAAAVD
NLLIEDEQDTQARRCTGVLLANGEVVRSRSVVLTTGTFLRAHINIGLEVR
PAGRIGDAPAKALGEAIDRLGFRMGRLKTGTPPRIAKDSVDFSQLQRHEG
DDPPMPFSFLNKDVWLPAKDQLPCYLTYTTPKVSDIVRDNLHVNRHVTEE
ITGPRYCPSIESKILRFGAKVHQVWLEPEGLDSSLVYPQGISCTLPHDQQ
VELVHAIQGLEKAVVVQPGYGVEYDFIDPRELYPTLETKRVPGLFFAGQI
NGTTGYEEAAAQGIIAGANAAGKTRHSDGRQLTISRTEGYIGVLIDDLTS
LGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVSSDRYQHFQQT
EARLQSAIESLRRLRKHTHYWRQALNLPKAKASVEKSAFDMLGIPADNIT
IEQLIHLHPNELSWLKGERNLAERLKIEALYSFFVDEQQRDVEDVRREER
LSIPADIDYFSKSLSLSNEERQKLTLIQPQTIAAASRIQGVTPSTIVRIL
KYVKKAELAKA*

GH24245.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11898-PA 663 GF11898-PA 1..663 1..661 3091 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21052-PA 661 GG21052-PA 1..661 1..661 3427 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20470-PA 658 GH20470-PA 1..658 1..661 2794 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4610-PA 661 CG4610-PA 1..661 1..661 3411 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21007-PA 663 GI21007-PA 1..654 1..657 2847 82.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10454-PA 479 GL10454-PA 1..467 1..469 2229 89.8 Plus
Dper\GL10455-PA 154 GL10455-PA 1..154 508..661 680 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18299-PA 659 GA18299-PA 1..659 1..661 3087 87.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15919-PA 661 GM15919-PA 1..661 1..661 3440 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11675-PA 661 GD11675-PA 1..661 1..661 3454 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21932-PA 659 GJ21932-PA 1..658 1..661 2857 82.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22159-PA 656 GK22159-PA 1..655 1..661 2903 81 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13994-PA 661 GE13994-PA 1..661 1..661 3420 96.5 Plus