Clone GH24292 Report

Search the DGRC for GH24292

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:242
Well:92
Vector:pOT2
Associated Gene/TranscriptDrice-RA
Protein status:GH24292.pep: gold
Preliminary Size:1976
Sequenced Size:1949

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7788 2001-01-01 Release 2 assignment
CG7788 2001-09-19 Blastp of sequenced clone
CG7788 2003-01-01 Sim4 clustering to Release 3
Ice 2008-04-29 Release 5.5 accounting
Ice 2008-08-15 Release 5.9 accounting
Ice 2008-12-18 5.12 accounting

Clone Sequence Records

GH24292.complete Sequence

1949 bp (1949 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058451

> GH24292.complete
ATCAGGCGCTATTTGGTGTTTTTCAACTGCCAACAACGGTCTTACAGAAT
TAAAGACAAAAACGCAATCGACTAAAGTAATTAGTTAATAACTAGCTGTC
TTTGTTGCGCGTAAACACGGACTTTCCCCAGAACGAAGCTAATTTGCCCA
AGTCGTGCATCCAAGCTTTTCACAGATTTGGAAAAACCTGTTTCGCAGTG
CTTGTGACTCATCAGTTTTCGCAGGCTCAAGGAGAGAACTTAGCCATGGA
CGCCACTAACAATGGAGAATCCGCCGACCAGGTGGGCATCAGGGTGGGCA
ATCCGGAGCAGCCCAACGATCACACAGATGCCCTGGGCTCCGTGGGATCC
GGAGGAGCGGGTAGCAGCGGCCTGGTCGCAGGATCCTCGCATCCTTACGG
CAGCGGAGCCATTGGGCAGCTGGCCAACGGGTACAGCTCACCCTCGTCCA
GCTACCGTAAGAATGTAGCCAAAATGGTCACCGACCGCCATGCAGCCGAG
TACAACATGCGCCACAAGAACCGCGGAATGGCACTGATCTTCAACCATGA
GCACTTCGAGGTGCCCACCTTGAAGTCTCGCGCGGGAACCAATGTGGACT
GCGAGAATCTGACTCGGGTGCTCAAGCAGCTGGACTTCGAAGTGACCGTG
TACAAGGACTGCCGCTACAAGGACATTTTGAGGACAATCGAGTATGCAGC
GTCGCAGAATCACAGCGATAGTGATTGCATCCTGGTCGCCATCCTGTCGC
ACGGCGAGATGGGCTACATCTACGCCAAGGACACACAGTACAAGCTGGAT
AACATCTGGAGCTTCTTCACGGCCAATCACTGCCCCTCGCTAGCCGGCAA
ACCCAAGTTGTTCTTCATACAGGCCTGCCAGGGCGACAGATTGGATGGCG
GAGTGACCATGCAGCGTTCTCAGACGGAAACCGATGGCGACTCCTCGATG
AGCTACAAGATTCCAGTGCACGCCGACTTTCTGATCGCCTACTCGACGGT
TCCTGGATTCTATTCGTGGCGCAACACCACCCGCGGCAGCTGGTTCATGC
AGAGCCTGTGCGCCGAACTGGCGGCCAATGGCAAGCGGCTGGACATCCTG
ACCCTGCTCACATTCGTGTGCCAGCGGGTGGCCGTGGACTTTGAGTCCTG
CACCCCGGACACTCCGGAGATGCACCAGCAGAAGCAGATACCCTGCATAA
CCACCATGCTGACGCGCATTCTGCGTTTCAGCGACAAGCAGTTGGCACCA
GCCGGACGGGTTTGATGGCTAATGGTATGGATCAAACGGTGGGTACGGCG
AGGTGTGTGATAAACCAAGTCGCAATTAAGTTAGAACCTCATGGGCTATC
GGCCTTGCAGCATATTTTTTATACAACACTTTTTTAACCTGCCCAATTGC
TCGACGAGATTGGTGCCACTGCCCGTTTTATTTTATTTAGGCACAAAGTA
TCTTTCGATTGACATTTATTAATGTCGCATTTACTCGTCTGTATTTATAT
TTTTTGGGGTGGGTAGAGTAGATCGATTTAACTTAGAAATCTAAGAGGTT
TTTACTCCGGCCAAAATTTTTTGACAATTTTAACTTGCCAACTGAACAAA
GACGATCTCAAAATTTTAAATTCTCTACTAAACCTTATCATAGAACAACT
TGCGCCTCTTTGATTCTCGATCAGGAATGTCGGCCCACCCTTATCTATAT
CTACCTTAGACCATTTACAGACAAGACCTTTTTACAATTTTATACACATA
GATATCTTTATAGTATAAGCCTGTGTGTCATGGTCGTCCAAAACGAAAAC
AAACGATTTTAGCCTGTAGTCGAGTGTTTTATGAACAATATATACTATTT
CTATGCCATTTGTACTCTTATATAATGCACATTAGCAAATGTTCTCCTTT
CAAGTTAACCGCTAATAAATCCGATTGAAAACAAAAAAAAAAAAAAAAA

GH24292.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ice-RA 1933 Ice-RA 1..1933 1..1933 9665 100 Plus
Dcp-1-RA 1985 Dcp-1-RA 872..1024 734..886 360 82.3 Plus
Dcp-1-RA 1985 Dcp-1-RA 1080..1189 942..1051 190 78.1 Plus
Dcp-1-RA 1985 Dcp-1-RA 1317..1377 1179..1239 185 86.8 Plus
Dcp-1-RA 1985 Dcp-1-RA 628..685 490..547 155 84.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25622222..25624139 1..1932 9290 99 Plus
chr2R 21145070 chr2R 19438918..19439181 734..997 405 76.9 Plus
chr2R 21145070 chr2R 19439345..19439483 1101..1239 230 77.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:05:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29799653..29801586 1..1934 9670 100 Plus
2R 25286936 2R 23552592..23552855 734..997 405 76.9 Plus
2R 25286936 2R 23553019..23553157 1101..1239 230 77.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29540484..29542417 1..1934 9670 100 Plus
2R 25260384 2R 23553791..23553943 734..886 360 82.3 Plus
2R 25260384 2R 23554296..23554356 1179..1239 185 86.8 Plus
2R 25260384 2R 23553999..23554054 942..997 160 85.7 Plus
2R 25260384 2R 23553547..23553604 490..547 155 84.4 Plus
Blast to na_te.dros performed on 2019-03-16 03:04:47 has no hits.

GH24292.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:05:32 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25622222..25624139 1..1932 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:57 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1020 246..1265 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:53 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1020 246..1265 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:07 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1020 246..1265 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:19:07 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1020 246..1265 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:36 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Drice-RA 1..1020 246..1265 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:46:38 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1932 1..1932 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:53 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1932 1..1932 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:07 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1927 6..1932 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:19:07 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1932 1..1932 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:36 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
Drice-RA 1..1927 6..1932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:32 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29799653..29801584 1..1932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:32 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29799653..29801584 1..1932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:05:32 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29799653..29801584 1..1932 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:07 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25625375..25627306 1..1932 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:54:02 Download gff for GH24292.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29540484..29542415 1..1932 100   Plus

GH24292.pep Sequence

Translation from 245 to 1264

> GH24292.pep
MDATNNGESADQVGIRVGNPEQPNDHTDALGSVGSGGAGSSGLVAGSSHP
YGSGAIGQLANGYSSPSSSYRKNVAKMVTDRHAAEYNMRHKNRGMALIFN
HEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEY
AASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLA
GKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYS
TVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFE
SCTPDTPEMHQQKQIPCITTMLTRILRFSDKQLAPAGRV*

GH24292.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18666-PA 338 GF18666-PA 1..338 1..339 1576 88.5 Plus
Dana\GF13064-PA 326 GF13064-PA 60..319 72..331 1060 71.9 Plus
Dana\GF17937-PA 309 GF17937-PA 56..299 94..324 407 36 Plus
Dana\GF10584-PA 450 GF10584-PA 161..409 63..288 231 25.2 Plus
Dana\GF13826-PA 525 GF13826-PA 264..523 39..330 216 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22866-PA 323 GG22866-PA 29..316 25..331 1050 62.2 Plus
Dere\GG16826-PA 308 GG16826-PA 56..305 94..331 420 35.6 Plus
Dere\GG10839-PA 531 GG10839-PA 275..529 45..330 235 28.9 Plus
Dere\GG12750-PA 503 GG12750-PA 265..495 88..312 232 31.3 Plus
Dere\GG15422-PA 451 GG15422-PA 174..411 72..285 228 27.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19956-PA 351 GH19956-PA 14..348 8..337 1425 81 Plus
Dgri\GH19945-PA 294 GH19945-PA 5..291 53..337 1019 65.6 Plus
Dgri\GH21208-PA 318 GH21208-PA 24..313 28..331 981 57.9 Plus
Dgri\GH13138-PA 292 GH13138-PA 36..279 85..330 607 49.4 Plus
Dgri\GH20516-PA 309 GH20516-PA 57..307 94..332 404 33.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
Drice-PA 339 CG7788-PA 1..339 1..339 1795 100 Plus
Dcp-1-PA 323 CG5370-PA 57..316 72..331 980 67.7 Plus
Decay-PA 308 CG14902-PA 56..305 94..331 405 35.6 Plus
Strica-PB 527 CG7863-PB 317..525 98..330 232 32.5 Plus
Strica-PA 527 CG7863-PA 317..525 98..330 232 32.5 Plus
Dredd-PD 488 CG7486-PD 253..480 88..312 201 30.1 Plus
Dronc-PA 450 CG8091-PA 187..410 86..288 199 24 Plus
Dredd-PG 440 CG7486-PG 199..432 88..312 195 29.3 Plus
Dredd-PE 494 CG7486-PE 253..486 88..312 195 29.3 Plus
Damm-PB 255 CG18188-PB 42..218 98..291 155 24.5 Plus
Damm-PA 255 CG18188-PA 42..218 98..291 155 24.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22043-PA 345 GI22043-PA 14..344 8..338 1461 82 Plus
Dmoj\GI20496-PA 318 GI20496-PA 41..311 57..331 993 63.3 Plus
Dmoj\GI22869-PA 295 GI22869-PA 7..295 34..328 691 45.6 Plus
Dmoj\GI10391-PA 539 GI10391-PA 28..244 64..275 362 36.7 Plus
Dmoj\GI12317-PA 451 GI12317-PA 186..402 75..279 260 29 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23515-PA 344 GL23515-PA 16..344 11..339 1572 89.4 Plus
Dper\GL16870-PA 323 GL16870-PA 49..316 64..331 981 64.9 Plus
Dper\GL11317-PA 257 GL11317-PA 8..252 83..331 809 59.8 Plus
Dper\GL27295-PA 308 GL27295-PA 56..305 94..331 432 36.8 Plus
Dper\GL12563-PA 457 GL12563-PA 167..417 63..285 222 25 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20588-PA 344 GA20588-PA 16..344 11..339 1577 89.7 Plus
Dpse\GA18828-PA 323 GA18828-PA 49..316 64..331 982 64.9 Plus
Dpse\GA24681-PA 261 GA24681-PA 8..256 83..331 880 63.1 Plus
Dpse\GA13340-PA 308 GA13340-PA 56..305 94..331 432 36.8 Plus
Dpse\GA20817-PA 457 GA20817-PA 167..417 63..285 225 25 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12823-PA 343 GM12823-PA 1..343 1..339 1815 98 Plus
Dsec\GM16025-PA 323 GM16025-PA 57..316 72..331 1019 68.1 Plus
Dsec\GM15423-PA 308 GM15423-PA 56..305 94..331 420 36 Plus
Dsec\GM16490-PA 526 GM16490-PA 316..524 98..330 255 32.1 Plus
Dsec\GM25197-PA 449 GM25197-PA 189..409 86..288 227 26.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21467-PA 343 GD21467-PA 1..343 1..339 1824 98.3 Plus
Dsim\GD11774-PA 323 GD11774-PA 57..316 72..331 1019 68.1 Plus
Dsim\GD20281-PA 302 GD20281-PA 56..299 94..331 352 32.4 Plus
Dsim\GD14228-PA 449 GD14228-PA 189..409 86..288 236 27 Plus
Dsim\GD10341-PA 160 GD10341-PA 4..158 153..330 188 31.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24096-PA 345 GJ24096-PA 12..344 8..338 1460 83.6 Plus
Dvir\GJ22346-PA 314 GJ22346-PA 11..308 14..332 1063 61.4 Plus
Dvir\GJ23418-PA 300 GJ23418-PA 6..294 39..330 763 52 Plus
Dvir\GJ19552-PA 271 GJ19552-PA 16..265 83..331 727 56 Plus
Dvir\GJ22849-PA 310 GJ22849-PA 57..300 94..324 418 36 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11928-PA 346 GK11928-PA 11..346 4..339 1493 84.1 Plus
Dwil\GK11926-PA 256 GK11926-PA 1..256 77..331 1128 78.9 Plus
Dwil\GK23280-PA 330 GK23280-PA 59..326 68..337 1036 68.6 Plus
Dwil\GK11927-PA 255 GK11927-PA 1..255 77..331 991 67.1 Plus
Dwil\GK11868-PA 311 GK11868-PA 56..308 94..331 395 34.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23886-PA 339 GE23886-PA 1..339 1..339 1792 96.8 Plus
Dyak\GE14302-PA 325 GE14302-PA 12..318 30..331 1045 61.6 Plus
Dyak\GE26146-PA 308 GE26146-PA 56..305 94..331 409 35.2 Plus
Dyak\GE21731-PA 451 GE21731-PA 162..411 63..288 235 26.7 Plus
Dyak\Dredd-PA 507 GE16575-PA 262..499 81..312 233 30.8 Plus

GH24292.hyp Sequence

Translation from 245 to 1264

> GH24292.hyp
MDATNNGESADQVGIRVGNPEQPNDHTDALGSVGSGGAGSSGLVAGSSHP
YGSGAIGQLANGYSSPSSSYRKNVAKMVTDRHAAEYNMRHKNRGMALIFN
HEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEY
AASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLA
GKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYS
TVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFE
SCTPDTPEMHQQKQIPCITTMLTRILRFSDKQLAPAGRV*

GH24292.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Drice-PA 339 CG7788-PA 1..339 1..339 1795 100 Plus
Dcp-1-PA 323 CG5370-PA 57..316 72..331 980 67.7 Plus
Decay-PA 308 CG14902-PA 56..305 94..331 405 35.6 Plus
Strica-PB 527 CG7863-PB 317..525 98..330 232 32.5 Plus
Strica-PA 527 CG7863-PA 317..525 98..330 232 32.5 Plus