Clone GH24315 Report

Search the DGRC for GH24315

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:243
Well:15
Vector:pOT2
Associated Gene/TranscriptCG11309-RB
Protein status:GH24315.pep: gold
Preliminary Size:1565
Sequenced Size:1430

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11309 2004-07-13 Blastp of sequenced clone
CG11309 2008-04-29 Release 5.5 accounting
CG11309 2008-08-15 Release 5.9 accounting
CG11309 2008-12-18 5.12 accounting

Clone Sequence Records

GH24315.complete Sequence

1430 bp (1430 high quality bases) assembled on 2004-07-13

GenBank Submission: BT015284

> GH24315.complete
TTTATTTTTCGTTCGCTCGATGCTTTCACCTGTTTGTTGGGCGCATTGGT
AATAAAATTATTCGAATGAAATCAATTCTGTATTAATTAGGAGGGAGCAC
AAGTATATTAAACAAATTGCAAAAAAATCTGTGACACAAAGACAACGTCG
TTACTGATAAGGGCCGAAATCGGCTAAACTTTGGAATTGGTGCTCATTCG
CTTTTTGGCCACTTTCGAGCGCAGAAATGGACACGGACGACAACTCAAGT
GGCACTATTACCGGCAGTGATCTTGGCCAGCGTTATCGGCATGCAGGCGA
CTTAACTGGCGAAGCCCCAACCAGACCCTTCGCCGAGATCAGCATTACGG
TTCCATGGGGGCACATATCCGGCAAGTGGTACGGTCCGCAGAACGTCCAA
CCAATTTTAGGACTGCACGGGTGGCAGGATAATGCGGGAACCTTTGATCG
CCTGATGCCGCTGCTGTCGCCGGACGTGGCATTCCTCGCGATCGATCTTC
CTGGTCACGGGCTATCGTCCCGACTGCCTGATGGCTGCTACTACAACTCC
GTGGATAATCTGTATGTGATCCGCCTGATCATGAAGCAGTACAAGTGGGA
GAAAGTGTCCCTGGTTGGACACTCAATGTCGTCCATTATTTGCTTTGTTT
TCGCCGCGGTCTTTCCGGACAAGGTGGACATGATCATTGGGATTGATGCC
CTGAAACCTCATCAGCGTCCGTATCCGTCGGTTATTAGGACCATGGAAAC
CCGTTTGGACGAGTTCTTGCGTGAAGACGAAAGGAACCGGAGTAAGAACG
AGCCGCCGAGCTACACCTACGATGAACTTATTGAGAGGGTCTATATCGGC
ACCTTCCATTCGGTGAACAAGGAGCACTGCAAGCATTTAATGGCTCGCAA
CATCGGCAAGTCGGAGAAGTACCCGGACAAGTACTTCTTCTGCCGCGATA
GGCGTCTCAAGTTTTACAACTATGCCATCGGGTCCCAGGAGCTGTGTGTG
GAAATGGCCAATCGGATTACATGTCCTTACTTGTTCATCAAGGCCGCCCA
GTCCTCGTATTTCGAGGACAAGAAGTACTACGACGAGGTGCTGGATGTGC
TGTTGAAGAAGCCGAACTTTGAGTACCTGGAGGTTAATGGCTCGCACCAT
GTGCACATGAACGATCCAGAGGCCATCATTGCACCGGTCAACAACTTTAT
CCAGCGCTTCGGACCGGCGGCAGCGGCTGCATCCCGCCAGAAGGCCAAGG
AGGCGAAGGAGAGCAAGCTTTAGGCCAACGGTGTGGTAAATAGAGCTTAT
TTATTGTAGTACAGATTGTACAGGTTTTTATACTTAATTGTTTATGCTAT
GTGATCGCGGCAGAGGACTCGGCTCTGCTATAAATACACAATGTACATAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH24315.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-RB 1767 CG11309-RB 76..1475 1..1400 7000 100 Plus
CG11309-RA 1730 CG11309-RA 385..1457 328..1400 5365 100 Plus
CG11309.a 1632 CG11309.a 287..1359 328..1400 5365 100 Plus
CG11309-RA 1730 CG11309-RA 28..355 1..328 1640 100 Plus
CG11309.a 1632 CG11309.a 76..257 147..328 910 100 Plus
CG11309.a 1632 CG11309.a 28..77 1..50 250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21291488..21292557 1398..329 5350 100 Minus
chr3L 24539361 chr3L 21292918..21293099 328..147 910 100 Minus
chr3L 24539361 chr3L 21293296..21293443 148..1 740 100 Minus
chr3L 24539361 chr3L 21294096..21294206 338..448 210 79.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21302478..21303549 1400..329 5360 100 Minus
3L 28110227 3L 21303910..21304091 328..147 910 100 Minus
3L 28110227 3L 21304288..21304435 148..1 740 100 Minus
3L 28110227 3L 21305088..21305198 338..448 210 79.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21295578..21296649 1400..329 5360 100 Minus
3L 28103327 3L 21297010..21297191 328..147 910 100 Minus
3L 28103327 3L 21297388..21297535 148..1 740 100 Minus
3L 28103327 3L 21298188..21298298 338..448 210 79.2 Plus
Blast to na_te.dros performed 2019-03-15 15:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 76..168 88..1 119 63.4 Minus

GH24315.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:32:22 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21291488..21292557 329..1398 100 <- Minus
chr3L 21292918..21293099 147..328 100 <- Minus
chr3L 21293298..21293443 1..146 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:54:59 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 1..1047 227..1273 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:35:26 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 1..1047 227..1273 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:32:07 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RC 1..1047 227..1273 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:19:18 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 1..1047 227..1273 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:09:22 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RD 1..1047 227..1273 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:42:09 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 28..1425 1..1398 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:35:26 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 28..1425 1..1398 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:07 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 33..1430 1..1398 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:19:18 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 28..1425 1..1398 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:09:22 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
CG11309-RB 33..1430 1..1398 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:22 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302480..21303549 329..1398 100 <- Minus
3L 21303910..21304091 147..328 100 <- Minus
3L 21304290..21304435 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:22 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302480..21303549 329..1398 100 <- Minus
3L 21303910..21304091 147..328 100 <- Minus
3L 21304290..21304435 1..146 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:32:22 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21302480..21303549 329..1398 100 <- Minus
3L 21303910..21304091 147..328 100 <- Minus
3L 21304290..21304435 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:07 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21295580..21296649 329..1398 100 <- Minus
arm_3L 21297010..21297191 147..328 100 <- Minus
arm_3L 21297390..21297535 1..146 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:56:31 Download gff for GH24315.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21295580..21296649 329..1398 100 <- Minus
3L 21297010..21297191 147..328 100 <- Minus
3L 21297390..21297535 1..146 100   Minus

GH24315.pep Sequence

Translation from 226 to 1272

> GH24315.pep
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWGHISGK
WYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRL
PDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKV
DMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDE
LIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCRDRRLKFYNYA
IGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLDVLLKKPNFEY
LEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKAKEAKESKL*

GH24315.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24201-PA 348 GF24201-PA 1..348 1..348 1779 94 Plus
Dana\GF10275-PA 330 GF10275-PA 31..329 32..330 866 52.5 Plus
Dana\GF24930-PA 362 GF24930-PA 21..332 37..346 718 43.6 Plus
Dana\GF24931-PA 315 GF24931-PA 2..312 32..341 620 42.4 Plus
Dana\GF24933-PA 344 GF24933-PA 12..324 38..346 607 40.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13244-PA 349 GG13244-PA 1..349 1..348 1841 96.6 Plus
Dere\GG16172-PA 330 GG16172-PA 19..329 27..330 883 51.8 Plus
Dere\GG14529-PA 357 GG14529-PA 21..316 37..330 667 43.6 Plus
Dere\GG14531-PA 335 GG14531-PA 9..320 35..347 641 41.1 Plus
Dere\GG14532-PA 344 GG14532-PA 9..322 35..346 620 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16159-PA 359 GH16159-PA 8..359 2..348 1599 86.1 Plus
Dgri\GH16485-PA 353 GH16485-PA 22..332 37..345 696 42.8 Plus
Dgri\GH16488-PA 343 GH16488-PA 9..322 35..347 628 39.8 Plus
Dgri\GH23210-PA 318 GH23210-PA 9..317 35..342 563 38.9 Plus
Dgri\GH16489-PA 318 GH16489-PA 9..317 35..342 563 38.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PF 348 CG11309-PF 1..348 1..348 1864 100 Plus
CG11309-PE 348 CG11309-PE 1..348 1..348 1864 100 Plus
CG11309-PD 348 CG11309-PD 1..348 1..348 1864 100 Plus
CG11309-PC 348 CG11309-PC 1..348 1..348 1864 100 Plus
CG11309-PB 348 CG11309-PB 1..348 1..348 1864 100 Plus
CG11309-PA 358 CG11309-PA 1..358 1..348 1843 97.2 Plus
CG7632-PA 330 CG7632-PA 19..329 27..330 859 50.8 Plus
CG7632-PB 312 CG7632-PB 16..311 35..330 854 52.4 Plus
CG5707-PA 357 CG5707-PA 21..316 37..330 726 45.3 Plus
CG5707-PC 361 CG5707-PC 25..320 37..330 726 45.3 Plus
CG5707-PB 361 CG5707-PB 25..320 37..330 726 45.3 Plus
CG5704-PB 335 CG5704-PB 9..320 35..347 663 43.1 Plus
CG5704-PA 335 CG5704-PA 9..320 35..347 663 43.1 Plus
CG15879-PA 342 CG15879-PA 6..316 35..342 619 41.2 Plus
CG15820-PA 308 CG15820-PA 7..302 35..330 595 41.9 Plus
kraken-PB 331 CG3943-PB 41..329 37..326 495 37.3 Plus
kraken-PA 331 CG3943-PA 41..329 37..326 495 37.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13311-PA 352 GI13311-PA 7..352 5..348 1564 85.5 Plus
Dmoj\GI12011-PA 336 GI12011-PA 37..335 32..330 894 53.5 Plus
Dmoj\GI12158-PA 395 GI12158-PA 60..355 37..330 710 45.3 Plus
Dmoj\GI12160-PA 342 GI12160-PA 9..305 35..330 655 43 Plus
Dmoj\GI12161-PA 343 GI12161-PA 9..331 35..346 599 39.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24589-PA 348 GL24589-PA 1..348 1..348 1738 92.5 Plus
Dper\GL24680-PA 330 GL24680-PA 31..329 32..330 853 52.2 Plus
Dper\GL24627-PA 331 GL24627-PA 9..325 35..348 660 41.6 Plus
Dper\GL24626-PA 348 GL24626-PA 9..329 35..347 643 42.5 Plus
Dper\GL19501-PA 186 GL19501-PA 1..184 141..326 224 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10906-PA 348 GA10906-PA 1..348 1..348 1738 92.5 Plus
Dpse\GA20494-PA 330 GA20494-PA 31..329 32..330 853 52.2 Plus
Dpse\GA19073-PA 365 GA19073-PA 28..323 37..330 715 46 Plus
Dpse\GA23367-PA 348 GA23367-PA 9..329 35..347 659 43.4 Plus
Dpse\GA23368-PA 332 GA23368-PA 9..305 35..330 649 43.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26924-PA 355 GM22149-PA 1..355 1..348 1834 95.8 Plus
Dsec\GM22356-PA 329 GM22356-PA 21..328 30..330 864 51.3 Plus
Dsec\GM14139-PA 345 GM14139-PA 9..319 35..342 619 41 Plus
Dsec\GM14136-PA 308 GM14136-PA 7..306 35..334 595 41.3 Plus
Dsec\GM14138-PA 293 GM14138-PA 9..270 35..298 594 44.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12125-PA 360 GD12125-PA 1..360 1..348 1858 96.1 Plus
Dsim\GD14950-PA 330 GD14950-PA 19..329 27..330 863 50.5 Plus
Dsim\GD13405-PA 357 GD13405-PA 21..316 37..330 670 44 Plus
Dsim\GD13408-PA 335 GD13408-PA 9..320 35..347 669 43 Plus
Dsim\GD13410-PA 345 GD13410-PA 9..319 35..342 627 41.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12081-PA 357 GJ12081-PA 24..357 15..348 1609 90.7 Plus
Dvir\GJ13282-PA 336 GJ13282-PA 37..335 32..330 887 53.8 Plus
Dvir\GJ13437-PA 357 GJ13437-PA 22..317 37..330 701 44.6 Plus
Dvir\GJ11632-PA 343 GJ11632-PA 9..321 35..346 644 40.5 Plus
Dvir\GJ13440-PA 343 GJ13440-PA 9..321 35..346 639 41.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20424-PA 352 GK20424-PA 18..333 15..330 1603 92.1 Plus
Dwil\GK20467-PA 335 GK20467-PA 36..334 32..330 844 51.2 Plus
Dwil\GK12598-PA 358 GK12598-PA 20..315 37..330 682 45.6 Plus
Dwil\GK12602-PA 346 GK12602-PA 9..311 35..335 669 43.9 Plus
Dwil\GK24439-PA 338 GK24439-PA 42..335 35..325 543 39.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22964-PA 348 GE22964-PA 1..348 1..348 1867 98.3 Plus
Dyak\GE19742-PA 330 GE19742-PA 19..329 27..330 878 51.8 Plus
Dyak\GE23049-PA 330 GE23049-PA 19..329 27..330 878 51.8 Plus
Dyak\GE20878-PA 357 GE20878-PA 21..316 37..330 669 44 Plus
Dyak\GE20883-PA 335 GE20883-PA 9..320 35..347 636 42.1 Plus

GH24315.hyp Sequence

Translation from 226 to 1272

> GH24315.hyp
MDTDDNSSGTITGSDLGQRYRHAGDLTGEAPTRPFAEISITVPWGHISGK
WYGPQNVQPILGLHGWQDNAGTFDRLMPLLSPDVAFLAIDLPGHGLSSRL
PDGCYYNSVDNLYVIRLIMKQYKWEKVSLVGHSMSSIICFVFAAVFPDKV
DMIIGIDALKPHQRPYPSVIRTMETRLDEFLREDERNRSKNEPPSYTYDE
LIERVYIGTFHSVNKEHCKHLMARNIGKSEKYPDKYFFCRDRRLKFYNYA
IGSQELCVEMANRITCPYLFIKAAQSSYFEDKKYYDEVLDVLLKKPNFEY
LEVNGSHHVHMNDPEAIIAPVNNFIQRFGPAAAAASRQKAKEAKESKL*

GH24315.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11309-PF 348 CG11309-PF 1..348 1..348 1864 100 Plus
CG11309-PE 348 CG11309-PE 1..348 1..348 1864 100 Plus
CG11309-PD 348 CG11309-PD 1..348 1..348 1864 100 Plus
CG11309-PC 348 CG11309-PC 1..348 1..348 1864 100 Plus
CG11309-PB 348 CG11309-PB 1..348 1..348 1864 100 Plus