Clone GH24360 Report

Search the DGRC for GH24360

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:243
Well:60
Vector:pOT2
Associated Gene/TranscriptCG8257-RA
Protein status:GH24360.pep: gold
Preliminary Size:1763
Sequenced Size:1787

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8257 2001-01-01 Release 2 assignment
CG8257 2001-09-19 Blastp of sequenced clone
CG8257 2003-01-01 Sim4 clustering to Release 3
CG8257 2008-04-29 Release 5.5 accounting
CG8257 2008-08-15 Release 5.9 accounting
CG8257 2008-12-18 5.12 accounting

Clone Sequence Records

GH24360.complete Sequence

1787 bp (1787 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058452

> GH24360.complete
ATGAAACTTTAGAAATAATTTTATTTAGACTTTAGACAAAATTTACAATA
TATAACAATGTATAGCCTCAAGGAGGGGCTCCGGGCTCTTAACAGTCGAA
CGAGACCAGCTCTCATTTGCCGGCGCAACATTTCGGAGGAGGCTCCCAAA
CAGGATAGTCCGTTTAAATGGAGAAAACCAATTGGCCAGCACACAGGAAT
CAATATATACAATCACGGCTTGCGGCAGAAGGTACCCCTAATCCTACGCA
ATCCCCAAATGGTCACATGGTACACTTGCGGACCCACTGTTTATGACTCC
GCGCACCTAGGTCATGCCAGCACCTATGTCAAGGTAGACATCCTGCAGCG
CATTCTCCGCGATTATTTTAAAATCAACCTGGTGACAGCCATGAACATCA
CGGATGTTGACGACAAGATCATTAAGCGGGCCCAGCTCGCTGGACTGGAC
TGGCAGAAGATGGCGCGAGCTTATGAAGCGGAATTTCGTCAGGACATGTT
GCGTCTCAATGTTCAGGCGCCGGATGTGCGCAGTCATGTGACTACCACCA
TGCCTGTCATTATTCAGTTCATTCAGCAGCTGATAGACGGAAAGCAGGCT
TACGTTACCCCGGATAACTCTGTTTACTTTGATGTCTCCAAAAGCAAGAA
CTATGGAAAGCTTCAAAACTTAGGCCTAAGCGAGGACAAATTGGACCCCA
TCAAACGAAACACTGCCGATTTTGCCTTGTGGAAGGCGCGTAAAAGTGGC
AGTGAGCCCACGTGGGCTGCACCCTGGGGTGGCGAGGGACGCCCCGGTTG
GCACATTGAATGCAGCGCCATTGCAGGTTTATTCTTTGGCCGCCAGTTGG
ACATTCATGCTGGCGGCTTGGACTTGCGTTTTCCGCACCACGAAAACGAG
GAGGCGCAGTGCTGTGCACGGTATAAAACTGACCAGTGGGTAAACTATTG
GGTGCACACCGGACAACTTCATATGGTTGGAGATCGGGAGAAGATGTCAA
AGTCTCTGGGCAACACGATCTCCGTGTCGGAGCTGCTGAAGAAGTACACC
GCCGATGAGTTTCGAATGGCCTGCCTGCTGTCCAATTACCGCAATGCAAT
GCCTTATAGCGATCAGTTGATGGTGACGGCTCGCCAGACCCTGCAGCGGT
TTAGAAACTTTCAGGCCGATCTAAGTGCCTATACCCAATTCCTGAAGCCC
GTGCACTTGTTAGACGAGGGAGCGTTAAAGGCCCAACTGACTCATACAGT
AACCGAATTCGATAATTGCCTTCGAGATGATTTCGATACCGCCAGAGCCA
TCAGCGTGCTAATCGATCAGATGAGCAGCATAAGTCGCTGCATAAATGAG
CAGCAAGTGGACGCACAGGAGGAGCCCGCCTACTGCATTGATCTGCTGTT
GGCAGCTGGAAACTTCATAAACCGTGCCATAGTCACGTTTGGTCTATCAG
AGTTGCAGGATAAAGAATCGTTGCAAGAAAAGGTTTCCTTTACGGATCAT
AGCATTGATCCCAATTTGCTTGTGAATGATGTGATAAACGTTCGGGGAAG
AATGCGGGAAAGGGCCACCTCCGGAAATGTTAAGAACCCGCAGCTTTTAG
CCGCCTGTGATGAACTGAGGAGCTTGTTACAACAGCACGGCATTCAGGTC
CGCGACCACAAACAGGGCAGCTCCTGGGTGTTTGCCGTGTCCTGTGAAAA
GCAAGATGATAAAAGCAAAAGCTCTGCCGAATAAAAGTTAATATATTATT
CTTTGGATGGTTACTACATAAAAAAAAAAAAAAAAAA

GH24360.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8257-RA 1932 CG8257-RA 93..1864 1..1772 8860 100 Plus
CG13016-RA 1526 CG13016-RA 1477..1526 1772..1723 250 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10046712..10048412 1769..69 8490 99.9 Minus
chr2R 21145070 chr2R 10048472..10048539 68..1 340 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14159388..14161091 1772..69 8520 100 Minus
2R 25286936 2R 14161151..14161218 68..1 340 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14160587..14162290 1772..69 8520 100 Minus
2R 25260384 2R 14162350..14162417 68..1 340 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:53:08 has no hits.

GH24360.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:53:52 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10046712..10048412 69..1769 99 <- Minus
chr2R 10048472..10048539 1..68 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:00 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 1..1677 58..1734 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:26 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 1..1677 58..1734 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:12:56 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 1..1677 58..1734 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:36:08 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 1..1677 58..1734 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:11:03 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 1..1677 58..1734 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:53 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 10..1778 1..1769 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:26 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 32..1800 1..1769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:12:56 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 45..1813 1..1769 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:36:08 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 10..1778 1..1769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:03 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
CG8257-RA 45..1813 1..1769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:52 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14159391..14161091 69..1769 100 <- Minus
2R 14161151..14161218 1..68 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:52 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14159391..14161091 69..1769 100 <- Minus
2R 14161151..14161218 1..68 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:53:52 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14159391..14161091 69..1769 100 <- Minus
2R 14161151..14161218 1..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:12:56 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10046896..10048596 69..1769 100 <- Minus
arm_2R 10048656..10048723 1..68 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:13 Download gff for GH24360.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14160590..14162290 69..1769 100 <- Minus
2R 14162350..14162417 1..68 100   Minus

GH24360.pep Sequence

Translation from 57 to 1733

> GH24360.pep
MYSLKEGLRALNSRTRPALICRRNISEEAPKQDSPFKWRKPIGQHTGINI
YNHGLRQKVPLILRNPQMVTWYTCGPTVYDSAHLGHASTYVKVDILQRIL
RDYFKINLVTAMNITDVDDKIIKRAQLAGLDWQKMARAYEAEFRQDMLRL
NVQAPDVRSHVTTTMPVIIQFIQQLIDGKQAYVTPDNSVYFDVSKSKNYG
KLQNLGLSEDKLDPIKRNTADFALWKARKSGSEPTWAAPWGGEGRPGWHI
ECSAIAGLFFGRQLDIHAGGLDLRFPHHENEEAQCCARYKTDQWVNYWVH
TGQLHMVGDREKMSKSLGNTISVSELLKKYTADEFRMACLLSNYRNAMPY
SDQLMVTARQTLQRFRNFQADLSAYTQFLKPVHLLDEGALKAQLTHTVTE
FDNCLRDDFDTARAISVLIDQMSSISRCINEQQVDAQEEPAYCIDLLLAA
GNFINRAIVTFGLSELQDKESLQEKVSFTDHSIDPNLLVNDVINVRGRMR
ERATSGNVKNPQLLAACDELRSLLQQHGIQVRDHKQGSSWVFAVSCEKQD
DKSKSSAE*

GH24360.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12902-PA 559 GF12902-PA 1..559 1..558 2351 76.4 Plus
Dana\GF11862-PA 741 GF11862-PA 204..631 132..537 557 34 Plus
Dana\GF11862-PA 741 GF11862-PA 9..98 38..126 245 47.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22443-PA 560 GG22443-PA 1..560 1..558 2799 91.6 Plus
Dere\GG20575-PA 741 GG20575-PA 204..631 132..537 563 34 Plus
Dere\GG20575-PA 741 GG20575-PA 9..98 38..126 249 48.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23122-PA 533 GH23122-PA 7..532 29..557 1898 65.6 Plus
Dgri\GH21680-PA 743 GH21680-PA 205..634 132..538 556 34.1 Plus
Dgri\GH21680-PA 743 GH21680-PA 13..99 40..126 255 51.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
CysRS-m-PB 558 CG8257-PB 1..558 1..558 2933 100 Plus
CysRS-m-PA 558 CG8257-PA 1..558 1..558 2933 100 Plus
CysRS-PA 741 CG8431-PA 204..654 132..558 538 33.6 Plus
CysRS-PA 741 CG8431-PA 20..98 48..126 237 53.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18944-PA 537 GI18944-PA 5..527 26..542 1937 66.3 Plus
Dmoj\GI18835-PA 740 GI18835-PA 204..630 132..537 557 34.5 Plus
Dmoj\GI18835-PA 740 GI18835-PA 9..98 38..126 248 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10829-PA 556 GL10829-PA 22..546 21..543 2203 73.8 Plus
Dper\GL10698-PA 741 GL10698-PA 204..641 132..550 569 34.1 Plus
Dper\GL10698-PA 741 GL10698-PA 9..98 38..126 255 51.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20936-PA 556 GA20936-PA 22..546 21..543 2197 73.6 Plus
Dpse\GA21073-PA 741 GA21073-PA 204..641 132..550 569 34.1 Plus
Dpse\GA21073-PA 741 GA21073-PA 9..98 38..126 255 51.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20229-PA 558 GM20229-PA 1..558 1..558 2956 97.5 Plus
Dsec\GM21666-PA 741 GM21666-PA 204..631 132..537 551 34 Plus
Dsec\GM15123-PA 256 GM15123-PA 1..206 175..367 438 45.1 Plus
Dsec\GM21666-PA 741 GM21666-PA 9..98 38..126 246 48.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11166-PA 741 GD11166-PA 204..631 132..537 548 34.4 Plus
Dsim\GD11166-PA 741 GD11166-PA 9..98 38..126 247 48.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21318-PA 566 GJ21318-PA 38..555 26..542 1933 66.8 Plus
Dvir\GJ21863-PA 741 GJ21863-PA 204..641 132..550 557 33.9 Plus
Dvir\GJ21863-PA 741 GJ21863-PA 9..98 38..126 242 48.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22127-PA 491 GK22127-PA 1..483 68..545 1897 71.3 Plus
Dwil\GK15775-PA 741 GK15775-PA 204..641 132..550 566 34.2 Plus
Dwil\GK15775-PA 741 GK15775-PA 9..98 38..126 250 48.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12334-PA 560 GE12334-PA 1..560 1..558 2797 92 Plus
Dyak\GE11760-PA 741 GE11760-PA 204..631 132..537 568 34.5 Plus
Dyak\GE11760-PA 741 GE11760-PA 9..98 38..126 249 48.9 Plus

GH24360.hyp Sequence

Translation from 57 to 1733

> GH24360.hyp
MYSLKEGLRALNSRTRPALICRRNISEEAPKQDSPFKWRKPIGQHTGINI
YNHGLRQKVPLILRNPQMVTWYTCGPTVYDSAHLGHASTYVKVDILQRIL
RDYFKINLVTAMNITDVDDKIIKRAQLAGLDWQKMARAYEAEFRQDMLRL
NVQAPDVRSHVTTTMPVIIQFIQQLIDGKQAYVTPDNSVYFDVSKSKNYG
KLQNLGLSEDKLDPIKRNTADFALWKARKSGSEPTWAAPWGGEGRPGWHI
ECSAIAGLFFGRQLDIHAGGLDLRFPHHENEEAQCCARYKTDQWVNYWVH
TGQLHMVGDREKMSKSLGNTISVSELLKKYTADEFRMACLLSNYRNAMPY
SDQLMVTARQTLQRFRNFQADLSAYTQFLKPVHLLDEGALKAQLTHTVTE
FDNCLRDDFDTARAISVLIDQMSSISRCINEQQVDAQEEPAYCIDLLLAA
GNFINRAIVTFGLSELQDKESLQEKVSFTDHSIDPNLLVNDVINVRGRMR
ERATSGNVKNPQLLAACDELRSLLQQHGIQVRDHKQGSSWVFAVSCEKQD
DKSKSSAE*

GH24360.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8257-PB 558 CG8257-PB 1..558 1..558 2933 100 Plus
CG8257-PA 558 CG8257-PA 1..558 1..558 2933 100 Plus
Aats-cys-PA 741 CG8431-PA 204..654 132..558 538 33.6 Plus
Aats-cys-PA 741 CG8431-PA 20..98 48..126 237 53.2 Plus