BDGP Sequence Production Resources |
Search the DGRC for GH24459
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 244 |
Well: | 59 |
Vector: | pOT2 |
Associated Gene/Transcript | Efhc1.2-RA |
Protein status: | GH24459.pep: gold |
Preliminary Size: | 3021 |
Sequenced Size: | 2541 |
Gene | Date | Evidence |
---|---|---|
CG11048 | 2001-01-01 | Release 2 assignment |
CG11048 | 2001-10-10 | Blastp of sequenced clone |
CG11048 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11048 | 2008-04-29 | Release 5.5 accounting |
CG11048 | 2008-08-15 | Release 5.9 accounting |
CG11048 | 2008-12-18 | 5.12 accounting |
2541 bp (2541 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060778
> GH24459.complete TTAACTGCCATATAACTGCTTTTGGCTTCAAGGCAAATGTAACCACAACG ATTTGGCGCAGGAAGTGCAGCAAAATTTTTATTTTGGTTTAGACAAAAGA GTACGAAATTATCTGTGCAAATGATGCGACTACCGGGAATGCCCATGCTA CCAGGTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCA AACGCTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGC CGGAACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCC GTGCCCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTT GCCACCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACT TCAAGGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAG GTGAAGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCC GAAAGTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGC GCATCCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGAC CTGAACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAG CGGATGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCG TGCCTGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAG CGATCAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAA AAAACATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGT TTCAGGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTT GAAGTCTGCTACTACCTGGCCGATGACACAATTGACATAAAGGAGAAATT TCCACGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAAAACGAGGCA AGTTGCCAAAGGAGTTTTCTGGTCTTCCTTTGCCTGGGCAACAAACGGCC ATGACGTTGCTTAATGTGCTGGGAAACAGTATGCGCGATGTGCGTTACGT AGCCGACCCGTTGAACACTGGTCAAAAAGAGGTTCAACATTACACCGATC AGGATCTGCAAATAGGCGCAGTGCTAAATGTTTTTGGGAGGAGTGTCGTA CTTACAAGCTGCGATCAGTTCACACAGAGCTACTACAGAGAAAAATACGG CATCCAGGAATTCAGCCCTCAGCCGATTCCAGAACGAAGTGATATTCGAC CGTACACTCAGGGTGGCATGGGATCCCGCCGATTGCCACCCTACAATGGC TGGGGTAGCCACGAGGATTCCGAAGGCAACTGTATCACCGTGGAGCCCAA ACCGCCACAGGCCGATTTCAAGAAGCTCTTCAAGTACGACGGATGCATCC TGCGCTTCGGAGCCAAGCTGATCTCGGCCATTCGGGATAATGGAGAGCGT GACTTTGTCATCAGCTATTTCCTGGCCGATGACACGTTGCAAATCTATGA GACGTCACGTCGAAACTCGGGCTTCCTGGGCGGCGAATTTCTTAAAAGGG CACGTGTGCCACTGCCGGGTCAGGATATGTACAGCTCATCAAGACCTGAA TACTACAGGGCCAATGACTTCTATATAGGACGCACAATGACTCTTAAGGA TCACATTTTCCACATTGTTTCCGCTGATGAGTTCACGCTGATGTACATGG AGCAACATCCCAGCGAGTTCCCCGTAGCGGACATTCAAAAAATCATGCAG AAGATACGCGAGGCAGTGCGTCCGGATTACAAGCAGTTTGTGCTGCGCTG CAAACCGGATGGTGACCTCGGCGACTATACCGCCGTTAGCTTCGAAACGT TGCGCTCGACTCTCCTGTCCTATCTGTCCAAGGATTGCCTGCTCAACCAT GAGATTGTGACCGTGTGTCGCTTTTTCTCGGCTGAGCAGGCAATGCCTCC CAGCTGCGATAGGAATCGAGTGCGAGCTGCCGCCCAACTGGAGCTGAAGC GAGCTTTGTGGAACGGCATGGATCAGCTGAACGATCATCTGAGCCACATT AATCCGGCGTGCAAGCCGTACATCAGTGAAGGTCAAGTGAGGTCTACTTT GCGAGGCTGCCGGCTGCCCTTCAGCTTGGAGCTGGTGGAGGACATACTGA TGGTGCTGCAGCGCAACGGACAGAACGAAATCGAGGTGCGCGACTTTCTC GCCTTCTTCAACATGCGCAACGACCAAGTGCCCGACATTGCTCCTCTCAA CATTGCCTTTGAGCTCTGCCCCAAGTTGCCCTTCCTGCACAAAGGGCGCC TGGTGGACTTCACCTGGTTCCTAGACTACCTTGGAATAGAGGAAGAACTA AAGCGAGCCAACAATTAATGAGTAGCCAACAATAATGAGGGCGTATCAAA AATTGCATGTATATACAGAAAAATTCGTGGCAATATAACTTTCGGAATGG TGAACATCGTGCTTAAGACCTAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11048-RA | 2572 | CG11048-RA | 43..2566 | 1..2524 | 12620 | 100 | Plus |
CG11208-RA | 2341 | CG11208-RA | 1929..2341 | 2524..2112 | 2065 | 100 | Minus |
CG8959-RA | 2661 | CG8959-RA | 387..516 | 350..479 | 260 | 80 | Plus |
CG8959-RA | 2661 | CG8959-RA | 830..970 | 805..945 | 165 | 74.4 | Plus |
CG8959-RA | 2661 | CG8959-RA | 2327..2394 | 2305..2372 | 160 | 82.3 | Plus |
CG8959-RA | 2661 | CG8959-RA | 1720..1776 | 1704..1760 | 150 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 16129177..16129922 | 1766..2521 | 3505 | 97.9 | Plus |
chr2R | 21145070 | chr2R | 16127270..16127823 | 172..725 | 2665 | 98.7 | Plus |
chr2R | 21145070 | chr2R | 16128533..16129054 | 1246..1767 | 2565 | 99.4 | Plus |
chr2R | 21145070 | chr2R | 16127945..16128465 | 725..1245 | 2485 | 98.5 | Plus |
chr2R | 21145070 | chr2R | 16127045..16127215 | 1..171 | 840 | 99.4 | Plus |
chrX | 22417052 | chrX | 15672914..15673213 | 649..350 | 285 | 73 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 20242118..20242876 | 1766..2524 | 3795 | 100 | Plus |
2R | 25286936 | 2R | 20240212..20240765 | 172..725 | 2770 | 100 | Plus |
2R | 25286936 | 2R | 20241474..20241995 | 1246..1767 | 2610 | 100 | Plus |
2R | 25286936 | 2R | 20240886..20241406 | 725..1245 | 2605 | 100 | Plus |
2R | 25286936 | 2R | 20239987..20240157 | 1..171 | 855 | 100 | Plus |
X | 23542271 | X | 15783054..15783353 | 649..350 | 300 | 73.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 20243317..20244075 | 1766..2524 | 3795 | 100 | Plus |
2R | 25260384 | 2R | 20241411..20241964 | 172..725 | 2770 | 100 | Plus |
2R | 25260384 | 2R | 20242673..20243194 | 1246..1767 | 2610 | 100 | Plus |
2R | 25260384 | 2R | 20242085..20242605 | 725..1245 | 2605 | 100 | Plus |
2R | 25260384 | 2R | 20241186..20241356 | 1..171 | 855 | 100 | Plus |
X | 23527363 | X | 15791322..15791451 | 479..350 | 260 | 80 | Minus |
X | 23527363 | X | 15790812..15790952 | 945..805 | 165 | 74.4 | Minus |
X | 23527363 | X | 15788748..15788815 | 2372..2305 | 160 | 82.3 | Minus |
X | 23527363 | X | 15789366..15789422 | 1760..1704 | 150 | 84.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 4880..4938 | 1337..1396 | 117 | 68.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16127045..16127215 | 1..171 | 99 | -> | Plus |
chr2R | 16127270..16127823 | 172..725 | 98 | -> | Plus |
chr2R | 16127946..16128465 | 726..1245 | 98 | -> | Plus |
chr2R | 16128533..16129054 | 1246..1767 | 99 | -> | Plus |
chr2R | 16129179..16129922 | 1768..2521 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11048-RA | 1..2298 | 121..2418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11048-RA | 1..2298 | 121..2418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Efhc1.2-RA | 1..2298 | 121..2418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11048-RA | 1..2298 | 121..2418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Efhc1.2-RA | 1..2298 | 121..2418 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11048-RA | 1..2521 | 1..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11048-RA | 1..2521 | 1..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Efhc1.2-RA | 52..2572 | 1..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11048-RA | 1..2521 | 1..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Efhc1.2-RA | 52..2572 | 1..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20239987..20240157 | 1..171 | 100 | -> | Plus |
2R | 20240212..20240765 | 172..725 | 100 | -> | Plus |
2R | 20240887..20241406 | 726..1245 | 100 | -> | Plus |
2R | 20241474..20241995 | 1246..1767 | 100 | -> | Plus |
2R | 20242120..20242873 | 1768..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20239987..20240157 | 1..171 | 100 | -> | Plus |
2R | 20240212..20240765 | 172..725 | 100 | -> | Plus |
2R | 20240887..20241406 | 726..1245 | 100 | -> | Plus |
2R | 20241474..20241995 | 1246..1767 | 100 | -> | Plus |
2R | 20242120..20242873 | 1768..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20239987..20240157 | 1..171 | 100 | -> | Plus |
2R | 20240212..20240765 | 172..725 | 100 | -> | Plus |
2R | 20240887..20241406 | 726..1245 | 100 | -> | Plus |
2R | 20241474..20241995 | 1246..1767 | 100 | -> | Plus |
2R | 20242120..20242873 | 1768..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16127492..16127662 | 1..171 | 100 | -> | Plus |
arm_2R | 16127717..16128270 | 172..725 | 100 | -> | Plus |
arm_2R | 16128392..16128911 | 726..1245 | 100 | -> | Plus |
arm_2R | 16128979..16129500 | 1246..1767 | 100 | -> | Plus |
arm_2R | 16129625..16130378 | 1768..2521 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20241411..20241964 | 172..725 | 100 | -> | Plus |
2R | 20242086..20242605 | 726..1245 | 100 | -> | Plus |
2R | 20242673..20243194 | 1246..1767 | 100 | -> | Plus |
2R | 20243319..20244072 | 1768..2521 | 100 | Plus | |
2R | 20241186..20241356 | 1..171 | 100 | -> | Plus |
Translation from 120 to 2417
> GH24459.pep MMRLPGMPMLPGAQFYDRGKRRHPRQQTLMHYQGIQMLSDRREPELVEPN GIVADPKCPPVPAQLNSLWAPKATTKLPPWLAYDKQVLCFNAYFKENLTE IYHAPYQVRKVKIFFYLEDGTMQVTEPKVENSGIPQGCLVHRQRIPKAPP TDREFISIFDLNVDTDVQIFDRVYHISGCDVFTRQFLNRAGIFVPEAQQE PCDPTTEIRKRSGLKQTGNTATSALPKKHAFAQFLEFDRRVLKFQGYWND RSEFGDVRKLEVCYYLADDTIDIKEKFPRNSGREGPTTFLKRGKLPKEFS GLPLPGQQTAMTLLNVLGNSMRDVRYVADPLNTGQKEVQHYTDQDLQIGA VLNVFGRSVVLTSCDQFTQSYYREKYGIQEFSPQPIPERSDIRPYTQGGM GSRRLPPYNGWGSHEDSEGNCITVEPKPPQADFKKLFKYDGCILRFGAKL ISAIRDNGERDFVISYFLADDTLQIYETSRRNSGFLGGEFLKRARVPLPG QDMYSSSRPEYYRANDFYIGRTMTLKDHIFHIVSADEFTLMYMEQHPSEF PVADIQKIMQKIREAVRPDYKQFVLRCKPDGDLGDYTAVSFETLRSTLLS YLSKDCLLNHEIVTVCRFFSAEQAMPPSCDRNRVRAAAQLELKRALWNGM DQLNDHLSHINPACKPYISEGQVRSTLRGCRLPFSLELVEDILMVLQRNG QNEIEVRDFLAFFNMRNDQVPDIAPLNIAFELCPKLPFLHKGRLVDFTWF LDYLGIEEELKRANN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11750-PA | 765 | GF11750-PA | 1..764 | 1..764 | 3753 | 89.1 | Plus |
Dana\GF15903-PA | 795 | GF15903-PA | 1..749 | 1..756 | 2318 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22018-PA | 765 | GG22018-PA | 1..765 | 1..765 | 4010 | 96.5 | Plus |
Dere\GG19373-PA | 791 | GG19373-PA | 1..749 | 1..756 | 2387 | 58.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23034-PA | 763 | GH23034-PA | 1..763 | 1..765 | 3426 | 81.7 | Plus |
Dgri\GH22339-PA | 780 | GH22339-PA | 1..759 | 1..764 | 2229 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Efhc1.2-PA | 765 | CG11048-PA | 1..765 | 1..765 | 4083 | 100 | Plus |
Efhc1.1-PA | 793 | CG8959-PA | 1..749 | 1..756 | 2385 | 58.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21104-PA | 763 | GI21104-PA | 1..762 | 1..764 | 3385 | 81 | Plus |
Dmoj\GI21716-PA | 780 | GI21716-PA | 1..760 | 1..765 | 2283 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10167-PA | 764 | GL10167-PA | 1..763 | 1..764 | 3596 | 85.6 | Plus |
Dper\GL13173-PA | 796 | GL13173-PA | 1..749 | 1..756 | 2389 | 57.3 | Plus |
Dper\GL18445-PA | 559 | GL18445-PA | 2..512 | 246..756 | 1617 | 57.6 | Plus |
Dper\GL15286-PA | 120 | GL15286-PA | 1..116 | 7..124 | 365 | 55.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10726-PA | 764 | GA10726-PA | 1..763 | 1..764 | 3603 | 85.9 | Plus |
Dpse\GA21435-PA | 796 | GA21435-PA | 1..749 | 1..756 | 2395 | 57.4 | Plus |
Dpse\GA22209-PA | 283 | GA22209-PA | 1..236 | 523..756 | 643 | 51.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21999-PA | 765 | GM21999-PA | 1..765 | 1..765 | 4068 | 98 | Plus |
Dsec\GM22527-PA | 793 | GM22527-PA | 1..744 | 1..751 | 2392 | 58.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11498-PA | 765 | GD11498-PA | 1..765 | 1..765 | 4068 | 98.2 | Plus |
Dsim\GD15778-PA | 793 | GD15778-PA | 1..744 | 1..751 | 2406 | 58.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20952-PA | 763 | GJ20952-PA | 1..763 | 1..765 | 3345 | 79.5 | Plus |
Dvir\GJ15581-PA | 780 | GJ15581-PA | 1..759 | 1..764 | 2299 | 55.8 | Plus |
Translation from 120 to 2417
> GH24459.hyp MMRLPGMPMLPGAQFYDRGKRRHPRQQTLMHYQGIQMLSDRREPELVEPN GIVADPKCPPVPAQLNSLWAPKATTKLPPWLAYDKQVLCFNAYFKENLTE IYHAPYQVRKVKIFFYLEDGTMQVTEPKVENSGIPQGCLVHRQRIPKAPP TDREFISIFDLNVDTDVQIFDRVYHISGCDVFTRQFLNRAGIFVPEAQQE PCDPTTEIRKRSGLKQTGNTATSALPKKHAFAQFLEFDRRVLKFQGYWND RSEFGDVRKLEVCYYLADDTIDIKEKFPRNSGREGPTTFLKRGKLPKEFS GLPLPGQQTAMTLLNVLGNSMRDVRYVADPLNTGQKEVQHYTDQDLQIGA VLNVFGRSVVLTSCDQFTQSYYREKYGIQEFSPQPIPERSDIRPYTQGGM GSRRLPPYNGWGSHEDSEGNCITVEPKPPQADFKKLFKYDGCILRFGAKL ISAIRDNGERDFVISYFLADDTLQIYETSRRNSGFLGGEFLKRARVPLPG QDMYSSSRPEYYRANDFYIGRTMTLKDHIFHIVSADEFTLMYMEQHPSEF PVADIQKIMQKIREAVRPDYKQFVLRCKPDGDLGDYTAVSFETLRSTLLS YLSKDCLLNHEIVTVCRFFSAEQAMPPSCDRNRVRAAAQLELKRALWNGM DQLNDHLSHINPACKPYISEGQVRSTLRGCRLPFSLELVEDILMVLQRNG QNEIEVRDFLAFFNMRNDQVPDIAPLNIAFELCPKLPFLHKGRLVDFTWF LDYLGIEEELKRANN*