Clone GH24459 Report

Search the DGRC for GH24459

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:244
Well:59
Vector:pOT2
Associated Gene/TranscriptEfhc1.2-RA
Protein status:GH24459.pep: gold
Preliminary Size:3021
Sequenced Size:2541

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11048 2001-01-01 Release 2 assignment
CG11048 2001-10-10 Blastp of sequenced clone
CG11048 2003-01-01 Sim4 clustering to Release 3
CG11048 2008-04-29 Release 5.5 accounting
CG11048 2008-08-15 Release 5.9 accounting
CG11048 2008-12-18 5.12 accounting

Clone Sequence Records

GH24459.complete Sequence

2541 bp (2541 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060778

> GH24459.complete
TTAACTGCCATATAACTGCTTTTGGCTTCAAGGCAAATGTAACCACAACG
ATTTGGCGCAGGAAGTGCAGCAAAATTTTTATTTTGGTTTAGACAAAAGA
GTACGAAATTATCTGTGCAAATGATGCGACTACCGGGAATGCCCATGCTA
CCAGGTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCA
AACGCTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGC
CGGAACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCC
GTGCCCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTT
GCCACCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACT
TCAAGGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAG
GTGAAGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCC
GAAAGTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGC
GCATCCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGAC
CTGAACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAG
CGGATGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCG
TGCCTGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAG
CGATCAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAA
AAAACATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGT
TTCAGGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTT
GAAGTCTGCTACTACCTGGCCGATGACACAATTGACATAAAGGAGAAATT
TCCACGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAAAACGAGGCA
AGTTGCCAAAGGAGTTTTCTGGTCTTCCTTTGCCTGGGCAACAAACGGCC
ATGACGTTGCTTAATGTGCTGGGAAACAGTATGCGCGATGTGCGTTACGT
AGCCGACCCGTTGAACACTGGTCAAAAAGAGGTTCAACATTACACCGATC
AGGATCTGCAAATAGGCGCAGTGCTAAATGTTTTTGGGAGGAGTGTCGTA
CTTACAAGCTGCGATCAGTTCACACAGAGCTACTACAGAGAAAAATACGG
CATCCAGGAATTCAGCCCTCAGCCGATTCCAGAACGAAGTGATATTCGAC
CGTACACTCAGGGTGGCATGGGATCCCGCCGATTGCCACCCTACAATGGC
TGGGGTAGCCACGAGGATTCCGAAGGCAACTGTATCACCGTGGAGCCCAA
ACCGCCACAGGCCGATTTCAAGAAGCTCTTCAAGTACGACGGATGCATCC
TGCGCTTCGGAGCCAAGCTGATCTCGGCCATTCGGGATAATGGAGAGCGT
GACTTTGTCATCAGCTATTTCCTGGCCGATGACACGTTGCAAATCTATGA
GACGTCACGTCGAAACTCGGGCTTCCTGGGCGGCGAATTTCTTAAAAGGG
CACGTGTGCCACTGCCGGGTCAGGATATGTACAGCTCATCAAGACCTGAA
TACTACAGGGCCAATGACTTCTATATAGGACGCACAATGACTCTTAAGGA
TCACATTTTCCACATTGTTTCCGCTGATGAGTTCACGCTGATGTACATGG
AGCAACATCCCAGCGAGTTCCCCGTAGCGGACATTCAAAAAATCATGCAG
AAGATACGCGAGGCAGTGCGTCCGGATTACAAGCAGTTTGTGCTGCGCTG
CAAACCGGATGGTGACCTCGGCGACTATACCGCCGTTAGCTTCGAAACGT
TGCGCTCGACTCTCCTGTCCTATCTGTCCAAGGATTGCCTGCTCAACCAT
GAGATTGTGACCGTGTGTCGCTTTTTCTCGGCTGAGCAGGCAATGCCTCC
CAGCTGCGATAGGAATCGAGTGCGAGCTGCCGCCCAACTGGAGCTGAAGC
GAGCTTTGTGGAACGGCATGGATCAGCTGAACGATCATCTGAGCCACATT
AATCCGGCGTGCAAGCCGTACATCAGTGAAGGTCAAGTGAGGTCTACTTT
GCGAGGCTGCCGGCTGCCCTTCAGCTTGGAGCTGGTGGAGGACATACTGA
TGGTGCTGCAGCGCAACGGACAGAACGAAATCGAGGTGCGCGACTTTCTC
GCCTTCTTCAACATGCGCAACGACCAAGTGCCCGACATTGCTCCTCTCAA
CATTGCCTTTGAGCTCTGCCCCAAGTTGCCCTTCCTGCACAAAGGGCGCC
TGGTGGACTTCACCTGGTTCCTAGACTACCTTGGAATAGAGGAAGAACTA
AAGCGAGCCAACAATTAATGAGTAGCCAACAATAATGAGGGCGTATCAAA
AATTGCATGTATATACAGAAAAATTCGTGGCAATATAACTTTCGGAATGG
TGAACATCGTGCTTAAGACCTAAAAAAAAAAAAAAAAAAAA

GH24459.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11048-RA 2572 CG11048-RA 43..2566 1..2524 12620 100 Plus
CG11208-RA 2341 CG11208-RA 1929..2341 2524..2112 2065 100 Minus
CG8959-RA 2661 CG8959-RA 387..516 350..479 260 80 Plus
CG8959-RA 2661 CG8959-RA 830..970 805..945 165 74.4 Plus
CG8959-RA 2661 CG8959-RA 2327..2394 2305..2372 160 82.3 Plus
CG8959-RA 2661 CG8959-RA 1720..1776 1704..1760 150 84.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16129177..16129922 1766..2521 3505 97.9 Plus
chr2R 21145070 chr2R 16127270..16127823 172..725 2665 98.7 Plus
chr2R 21145070 chr2R 16128533..16129054 1246..1767 2565 99.4 Plus
chr2R 21145070 chr2R 16127945..16128465 725..1245 2485 98.5 Plus
chr2R 21145070 chr2R 16127045..16127215 1..171 840 99.4 Plus
chrX 22417052 chrX 15672914..15673213 649..350 285 73 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20242118..20242876 1766..2524 3795 100 Plus
2R 25286936 2R 20240212..20240765 172..725 2770 100 Plus
2R 25286936 2R 20241474..20241995 1246..1767 2610 100 Plus
2R 25286936 2R 20240886..20241406 725..1245 2605 100 Plus
2R 25286936 2R 20239987..20240157 1..171 855 100 Plus
X 23542271 X 15783054..15783353 649..350 300 73.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20243317..20244075 1766..2524 3795 100 Plus
2R 25260384 2R 20241411..20241964 172..725 2770 100 Plus
2R 25260384 2R 20242673..20243194 1246..1767 2610 100 Plus
2R 25260384 2R 20242085..20242605 725..1245 2605 100 Plus
2R 25260384 2R 20241186..20241356 1..171 855 100 Plus
X 23527363 X 15791322..15791451 479..350 260 80 Minus
X 23527363 X 15790812..15790952 945..805 165 74.4 Minus
X 23527363 X 15788748..15788815 2372..2305 160 82.3 Minus
X 23527363 X 15789366..15789422 1760..1704 150 84.2 Minus
Blast to na_te.dros performed 2019-03-15 17:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 4880..4938 1337..1396 117 68.3 Plus

GH24459.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:35:23 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16127045..16127215 1..171 99 -> Plus
chr2R 16127270..16127823 172..725 98 -> Plus
chr2R 16127946..16128465 726..1245 98 -> Plus
chr2R 16128533..16129054 1246..1767 99 -> Plus
chr2R 16129179..16129922 1768..2521 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:03 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 1..2298 121..2418 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:27 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 1..2298 121..2418 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:39:50 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 1..2298 121..2418 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:20 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 1..2298 121..2418 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:58 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 1..2298 121..2418 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:42 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 1..2521 1..2521 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:26 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 1..2521 1..2521 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:39:50 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 52..2572 1..2521 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:20 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 1..2521 1..2521 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:58 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 52..2572 1..2521 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:23 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20239987..20240157 1..171 100 -> Plus
2R 20240212..20240765 172..725 100 -> Plus
2R 20240887..20241406 726..1245 100 -> Plus
2R 20241474..20241995 1246..1767 100 -> Plus
2R 20242120..20242873 1768..2521 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:23 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20239987..20240157 1..171 100 -> Plus
2R 20240212..20240765 172..725 100 -> Plus
2R 20240887..20241406 726..1245 100 -> Plus
2R 20241474..20241995 1246..1767 100 -> Plus
2R 20242120..20242873 1768..2521 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:35:23 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20239987..20240157 1..171 100 -> Plus
2R 20240212..20240765 172..725 100 -> Plus
2R 20240887..20241406 726..1245 100 -> Plus
2R 20241474..20241995 1246..1767 100 -> Plus
2R 20242120..20242873 1768..2521 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:39:50 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16127492..16127662 1..171 100 -> Plus
arm_2R 16127717..16128270 172..725 100 -> Plus
arm_2R 16128392..16128911 726..1245 100 -> Plus
arm_2R 16128979..16129500 1246..1767 100 -> Plus
arm_2R 16129625..16130378 1768..2521 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:12 Download gff for GH24459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20241411..20241964 172..725 100 -> Plus
2R 20242086..20242605 726..1245 100 -> Plus
2R 20242673..20243194 1246..1767 100 -> Plus
2R 20243319..20244072 1768..2521 100   Plus
2R 20241186..20241356 1..171 100 -> Plus

GH24459.pep Sequence

Translation from 120 to 2417

> GH24459.pep
MMRLPGMPMLPGAQFYDRGKRRHPRQQTLMHYQGIQMLSDRREPELVEPN
GIVADPKCPPVPAQLNSLWAPKATTKLPPWLAYDKQVLCFNAYFKENLTE
IYHAPYQVRKVKIFFYLEDGTMQVTEPKVENSGIPQGCLVHRQRIPKAPP
TDREFISIFDLNVDTDVQIFDRVYHISGCDVFTRQFLNRAGIFVPEAQQE
PCDPTTEIRKRSGLKQTGNTATSALPKKHAFAQFLEFDRRVLKFQGYWND
RSEFGDVRKLEVCYYLADDTIDIKEKFPRNSGREGPTTFLKRGKLPKEFS
GLPLPGQQTAMTLLNVLGNSMRDVRYVADPLNTGQKEVQHYTDQDLQIGA
VLNVFGRSVVLTSCDQFTQSYYREKYGIQEFSPQPIPERSDIRPYTQGGM
GSRRLPPYNGWGSHEDSEGNCITVEPKPPQADFKKLFKYDGCILRFGAKL
ISAIRDNGERDFVISYFLADDTLQIYETSRRNSGFLGGEFLKRARVPLPG
QDMYSSSRPEYYRANDFYIGRTMTLKDHIFHIVSADEFTLMYMEQHPSEF
PVADIQKIMQKIREAVRPDYKQFVLRCKPDGDLGDYTAVSFETLRSTLLS
YLSKDCLLNHEIVTVCRFFSAEQAMPPSCDRNRVRAAAQLELKRALWNGM
DQLNDHLSHINPACKPYISEGQVRSTLRGCRLPFSLELVEDILMVLQRNG
QNEIEVRDFLAFFNMRNDQVPDIAPLNIAFELCPKLPFLHKGRLVDFTWF
LDYLGIEEELKRANN*

GH24459.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11750-PA 765 GF11750-PA 1..764 1..764 3753 89.1 Plus
Dana\GF15903-PA 795 GF15903-PA 1..749 1..756 2318 55.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22018-PA 765 GG22018-PA 1..765 1..765 4010 96.5 Plus
Dere\GG19373-PA 791 GG19373-PA 1..749 1..756 2387 58.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23034-PA 763 GH23034-PA 1..763 1..765 3426 81.7 Plus
Dgri\GH22339-PA 780 GH22339-PA 1..759 1..764 2229 54 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Efhc1.2-PA 765 CG11048-PA 1..765 1..765 4083 100 Plus
Efhc1.1-PA 793 CG8959-PA 1..749 1..756 2385 58.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21104-PA 763 GI21104-PA 1..762 1..764 3385 81 Plus
Dmoj\GI21716-PA 780 GI21716-PA 1..760 1..765 2283 55.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10167-PA 764 GL10167-PA 1..763 1..764 3596 85.6 Plus
Dper\GL13173-PA 796 GL13173-PA 1..749 1..756 2389 57.3 Plus
Dper\GL18445-PA 559 GL18445-PA 2..512 246..756 1617 57.6 Plus
Dper\GL15286-PA 120 GL15286-PA 1..116 7..124 365 55.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10726-PA 764 GA10726-PA 1..763 1..764 3603 85.9 Plus
Dpse\GA21435-PA 796 GA21435-PA 1..749 1..756 2395 57.4 Plus
Dpse\GA22209-PA 283 GA22209-PA 1..236 523..756 643 51.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21999-PA 765 GM21999-PA 1..765 1..765 4068 98 Plus
Dsec\GM22527-PA 793 GM22527-PA 1..744 1..751 2392 58.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11498-PA 765 GD11498-PA 1..765 1..765 4068 98.2 Plus
Dsim\GD15778-PA 793 GD15778-PA 1..744 1..751 2406 58.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20952-PA 763 GJ20952-PA 1..763 1..765 3345 79.5 Plus
Dvir\GJ15581-PA 780 GJ15581-PA 1..759 1..764 2299 55.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15906-PA 766 GK15906-PA 1..766 1..765 3514 82.2 Plus
Dwil\GK25821-PA 785 GK25821-PA 1..749 1..756 2378 58 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12095-PA 764 GE12095-PA 1..764 1..765 4000 96.5 Plus
Dyak\GE16021-PA 791 GE16021-PA 1..749 1..756 2377 57.8 Plus

GH24459.hyp Sequence

Translation from 120 to 2417

> GH24459.hyp
MMRLPGMPMLPGAQFYDRGKRRHPRQQTLMHYQGIQMLSDRREPELVEPN
GIVADPKCPPVPAQLNSLWAPKATTKLPPWLAYDKQVLCFNAYFKENLTE
IYHAPYQVRKVKIFFYLEDGTMQVTEPKVENSGIPQGCLVHRQRIPKAPP
TDREFISIFDLNVDTDVQIFDRVYHISGCDVFTRQFLNRAGIFVPEAQQE
PCDPTTEIRKRSGLKQTGNTATSALPKKHAFAQFLEFDRRVLKFQGYWND
RSEFGDVRKLEVCYYLADDTIDIKEKFPRNSGREGPTTFLKRGKLPKEFS
GLPLPGQQTAMTLLNVLGNSMRDVRYVADPLNTGQKEVQHYTDQDLQIGA
VLNVFGRSVVLTSCDQFTQSYYREKYGIQEFSPQPIPERSDIRPYTQGGM
GSRRLPPYNGWGSHEDSEGNCITVEPKPPQADFKKLFKYDGCILRFGAKL
ISAIRDNGERDFVISYFLADDTLQIYETSRRNSGFLGGEFLKRARVPLPG
QDMYSSSRPEYYRANDFYIGRTMTLKDHIFHIVSADEFTLMYMEQHPSEF
PVADIQKIMQKIREAVRPDYKQFVLRCKPDGDLGDYTAVSFETLRSTLLS
YLSKDCLLNHEIVTVCRFFSAEQAMPPSCDRNRVRAAAQLELKRALWNGM
DQLNDHLSHINPACKPYISEGQVRSTLRGCRLPFSLELVEDILMVLQRNG
QNEIEVRDFLAFFNMRNDQVPDIAPLNIAFELCPKLPFLHKGRLVDFTWF
LDYLGIEEELKRANN*

GH24459.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Efhc1.2-PA 765 CG11048-PA 1..765 1..765 4083 100 Plus
Efhc1.1-PA 793 CG8959-PA 1..749 1..756 2385 58.5 Plus