Clone GH24506 Report

Search the DGRC for GH24506

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:245
Well:6
Vector:pOT2
Associated Gene/TranscriptUba3-RA
Protein status:GH24506.pep: gold
Sequenced Size:1457

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13343 2003-01-01 Sim4 clustering to Release 3
CG13343 2008-04-29 Release 5.5 accounting
CG13343 2008-08-15 Release 5.9 accounting
CG13343 2008-12-18 5.12 accounting

Clone Sequence Records

GH24506.complete Sequence

1457 bp (1457 high quality bases) assembled on 2005-06-20

GenBank Submission: BT023713

> GH24506.complete
AAAAATGTCTGTCCACTCACCCAATCCTGGCTTAATCCTCCAGAGCAAGC
GTTTCAATGGACTGCGGAACATCCTGGAACGCGAAGGTCCCTTCTGCAAG
GACGGTTTCGCGGCCTCGTCGGAAAACCTGGAGTTCTTGCAGACCAAGTG
CCAGGTTCTGATCATCGGAGCCGGTGGCCTGGGCTGCGAACTGCTGAAGG
ATCTGGCTCTGATGGGCTTCGGCAACCTGCACGTCATCGACATGGACACC
ATCGAGCTGTCCAACCTGAATCGCCAGTTTCTGTTCCGTCGCACAGACAT
TGGCGCCTCCAAGGCGGAGTGTGCGGCTCGCTTCATCAACGCAAGAGTGC
CTACTTGCCGGGTGACGCCGCATTTCAAGAAAATCCAGGACTTCGATGAG
TCCTTCTATCAGCAGTTCCACCTGGTTGTCTGTGGCCTAGACTCCATTGT
CGCCCGGCGTTGGATCAATGGCATGCTGCTATCAATGCTGCGATATGAGG
AGGACGGCACCATAGATACCAGCTCCATAGTGCCCATGATTGATGGCGGC
ACCGAGGGCTTCAAGGGGAACGCACGCGTCATCCTGCCCGGTTTCACGGC
CTGCATTGAGTGCACGCTGGACCTGTTCCCGCCGCAGGTCAACTATCCCC
TATGCACCATAGCAAATACTCCCAGGCTTCCGGAGCATTGCATTGAGTAC
GTAAAGATCATACAGTGGGAGAAACAGAATCCGTTTGGAGTGCCCCTCGA
TGGGGACGATCCCCAGCACATTGGTTGGATCTACGAACGGGCACTGGAGC
GGTCCAATGAGTTTAACATCACCGGAGTGACCTATCGCTTGGTCCAGGGC
GTTGTCAAGCACATCATTCCAGCTGTGGCCAGTACCAATGCAGCCATTGC
CGCCGCCTGTGCTTTGGAGGTCTTTAAGTTGGCCACCAGCTGCTATGACA
GCATGGCAAACTACCTGAACTTCAACGACCTGGACGGAATCTATACCTAC
ACCTACGAGGCCGAGAAGTCGGAAAACTGCTTGGCGTGCAGCAATACACC
GCAGCCGTTGCCGATTGAGGATCCCAACACCACCACGCTGGAGGATGTGA
TAAAGCTATTGTGTGATTCCCCGCGTTTCCAGCTGAAAAGCCCAGCCTTG
ACCACTGTGATGAAGGACGGCAAGCGGCGGACTTTGTACATGTCCGGGGT
AAAGAGCATTGAAGAGGCCACCCGAAAGAACCTTACTCAGAGCCTGGGCG
AACTGGGTCTACACGATGGACAGCAGCTCACAGTCACCGATGCCACCTCG
CCGTCCGCCATGACTCTGCAGCTGAAGTATCAGTCCAATGAGGTGGAGAT
GGTCTAAAGTGTATCACAGTAGATAACAATTTTAATACACAAGTCGTATA
TGTAAATAAACAGCAGGCTTAGCCTCGAGTTACGCATCTAAAAAAAAAAA
AAAAAAA

GH24506.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13343-RA 1481 CG13343-RA 38..1479 1..1442 7210 100 Plus
CG16935.a 1011 CG16935.a 925..1011 1442..1356 435 100 Minus
CG16935-RA 1316 CG16935-RA 1230..1316 1442..1356 435 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9746345..9747783 1..1439 7195 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13858994..13860435 1..1442 7210 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13860193..13861634 1..1442 7210 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:53:21 has no hits.

GH24506.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:54:14 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9746345..9747783 1..1439 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:06 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
CG13343-RA 1..1353 5..1357 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:57:37 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
CG13343-RA 1..1353 5..1357 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:52:54 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
Uba3-RA 1..1353 5..1357 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:38:27 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
CG13343-RA 1..1353 5..1357 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:26 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
Uba3-RA 1..1353 5..1357 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:37:11 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
CG13343-RA 38..1476 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:57:37 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
CG13343-RA 38..1476 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:54 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
Uba3-RA 43..1481 1..1439 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:38:27 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
CG13343-RA 38..1476 1..1439 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:26 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
Uba3-RA 43..1481 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:14 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13858994..13860432 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:14 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13858994..13860432 1..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:54:14 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13858994..13860432 1..1439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:54 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9746499..9747937 1..1439 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:17:03 Download gff for GH24506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13860193..13861631 1..1439 100   Plus

GH24506.hyp Sequence

Translation from 0 to 1356

> GH24506.hyp
KMSVHSPNPGLILQSKRFNGLRNILEREGPFCKDGFAASSENLEFLQTKC
QVLIIGAGGLGCELLKDLALMGFGNLHVIDMDTIELSNLNRQFLFRRTDI
GASKAECAARFINARVPTCRVTPHFKKIQDFDESFYQQFHLVVCGLDSIV
ARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILPGFTA
CIECTLDLFPPQVNYPLCTIANTPRLPEHCIEYVKIIQWEKQNPFGVPLD
GDDPQHIGWIYERALERSNEFNITGVTYRLVQGVVKHIIPAVASTNAAIA
AACALEVFKLATSCYDSMANYLNFNDLDGIYTYTYEAEKSENCLACSNTP
QPLPIEDPNTTTLEDVIKLLCDSPRFQLKSPALTTVMKDGKRRTLYMSGV
KSIEEATRKNLTQSLGELGLHDGQQLTVTDATSPSAMTLQLKYQSNEVEM
V*

GH24506.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Uba3-PA 450 CG13343-PA 1..450 2..451 2363 100 Plus
Uba2-PA 700 CG7528-PA 13..207 43..253 369 39.4 Plus
Uba1-PC 1008 CG1782-PC 426..601 54..235 255 33.5 Plus
Uba1-PA 1191 CG1782-PA 609..784 54..235 255 33.5 Plus

GH24506.pep Sequence

Translation from 1 to 1356

> GH24506.pep
KMSVHSPNPGLILQSKRFNGLRNILEREGPFCKDGFAASSENLEFLQTKC
QVLIIGAGGLGCELLKDLALMGFGNLHVIDMDTIELSNLNRQFLFRRTDI
GASKAECAARFINARVPTCRVTPHFKKIQDFDESFYQQFHLVVCGLDSIV
ARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILPGFTA
CIECTLDLFPPQVNYPLCTIANTPRLPEHCIEYVKIIQWEKQNPFGVPLD
GDDPQHIGWIYERALERSNEFNITGVTYRLVQGVVKHIIPAVASTNAAIA
AACALEVFKLATSCYDSMANYLNFNDLDGIYTYTYEAEKSENCLACSNTP
QPLPIEDPNTTTLEDVIKLLCDSPRFQLKSPALTTVMKDGKRRTLYMSGV
KSIEEATRKNLTQSLGELGLHDGQQLTVTDATSPSAMTLQLKYQSNEVEM
V*

GH24506.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13717-PA 450 GF13717-PA 1..450 2..451 2223 88.9 Plus
Dana\GF10481-PA 691 GF10481-PA 12..192 42..235 375 39.3 Plus
Dana\GF11487-PA 1191 GF11487-PA 608..784 53..235 271 33.3 Plus
Dana\GF15533-PA 451 GF15533-PA 92..239 52..211 153 30 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20409-PA 450 GG20409-PA 1..449 2..450 2386 98 Plus
Dere\GG14919-PA 703 GG14919-PA 13..192 43..235 383 41 Plus
Dere\GG25268-PA 1189 GG25268-PA 606..782 53..235 269 33.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21039-PA 451 GH21039-PA 1..450 2..450 2130 85.6 Plus
Dgri\GH15287-PA 707 GH15287-PA 15..192 44..235 377 40.7 Plus
Dgri\GH22854-PA 1244 GH22854-PA 661..837 53..235 280 34.4 Plus
Dgri\GH10959-PA 449 GH10959-PA 89..237 52..211 151 31.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
Uba3-PA 450 CG13343-PA 1..450 2..451 2363 100 Plus
Uba2-PA 700 CG7528-PA 13..207 43..253 369 39.4 Plus
Uba1-PC 1008 CG1782-PC 426..601 54..235 255 33.5 Plus
Uba1-PA 1191 CG1782-PA 609..784 54..235 255 33.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18642-PA 451 GI18642-PA 1..451 2..451 2171 87.1 Plus
Dmoj\GI11997-PA 700 GI11997-PA 13..192 43..235 377 40.5 Plus
Dmoj\GI21231-PA 1198 GI21231-PA 615..791 53..235 275 33.9 Plus
Dmoj\GI10453-PA 452 GI10453-PA 91..239 52..211 154 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17480-PA 450 GL17480-PA 1..449 2..450 2227 90.6 Plus
Dper\GL22481-PA 687 GL22481-PA 13..207 43..253 391 39.9 Plus
Dper\GL17328-PA 627 GL17328-PA 44..220 53..235 287 34.9 Plus
Dper\GL26133-PA 451 GL26133-PA 92..239 52..211 157 30.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12220-PA 450 GA12220-PA 1..449 2..450 2227 90.6 Plus
Dpse\GA20416-PA 697 GA20416-PA 13..207 43..253 393 39.9 Plus
Dpse\GA14681-PA 1184 GA14681-PA 601..777 53..235 288 34.9 Plus
Dpse\GA28952-PA 58 GA28952-PA 1..51 387..437 219 86.3 Plus
Dpse\GA12041-PA 451 GA12041-PA 92..239 52..211 157 30.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21498-PA 450 GM21498-PA 1..450 2..451 2399 98.7 Plus
Dsec\GM24970-PA 701 GM24970-PA 13..192 43..235 384 41 Plus
Dsec\GM20586-PA 1191 GM20586-PA 608..784 53..235 269 33.3 Plus
Dsec\GM17034-PA 453 GM17034-PA 94..241 52..211 158 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10991-PA 294 GD10991-PA 1..293 158..450 1568 99.3 Plus
Dsim\GD10990-PA 144 GD10990-PA 1..133 2..134 702 98.5 Plus
Dsim\GD13019-PA 701 GD13019-PA 13..192 43..235 384 41 Plus
Dsim\GD10057-PA 1191 GD10057-PA 608..784 53..235 269 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21656-PA 451 GJ21656-PA 1..451 2..451 2151 86.7 Plus
Dvir\GJ12222-PA 697 GJ12222-PA 13..192 43..235 376 40.5 Plus
Dvir\GJ20835-PA 1230 GJ20835-PA 647..823 53..235 284 34.4 Plus
Dvir\GJ21670-PA 452 GJ21670-PA 92..240 52..211 156 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21978-PA 450 GK21978-PA 1..450 2..451 2157 87.4 Plus
Dwil\GK19989-PA 747 GK19989-PA 13..192 43..235 371 39.5 Plus
Dwil\GK15620-PA 1209 GK15620-PA 621..802 48..235 280 33.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12570-PA 450 GE12570-PA 1..450 2..451 2398 98.2 Plus
Dyak\GE20372-PA 705 GE20372-PA 13..192 43..235 383 41 Plus
Dyak\GE22126-PA 1189 GE22126-PA 606..782 53..235 269 33.3 Plus
Dyak\GE18783-PA 453 GE18783-PA 94..241 52..211 153 30 Plus