Clone GH24564 Report

Search the DGRC for GH24564

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:245
Well:64
Vector:pOT2
Associated Gene/TranscriptTeh1-RA
Protein status:GH24564.pep: gold
Preliminary Size:2808
Sequenced Size:2760

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12806 2001-01-01 Release 2 assignment
CG12806 2001-09-19 Blastp of sequenced clone
CG12806 2003-01-01 Sim4 clustering to Release 3
Teh1 2008-04-29 Release 5.5 accounting
Teh1 2008-08-15 Release 5.9 accounting
Teh1 2008-12-18 5.12 accounting

Clone Sequence Records

GH24564.complete Sequence

2760 bp (2760 high quality bases) assembled on 2001-09-19

GenBank Submission: AY059448

> GH24564.complete
AGAGGCACGTCAGGGCCAAGCGCGCGCGCTTCTCGTGTCGAGAATTCTGT
CTGTCTGTCCTGTCTGTCCGCCAGCGTGTGCGTGAGCGTGTGGGTGCATG
TGTGTGCGTGAGCCAATGGCAGCGTCGGTGTTAGCCAATTCCAGTGCTGT
GGCAAAAAATACCGTTCCGTAATCGTGCAAAAAAACGTGCAAAAGTTTGG
CCCCCAAAATCAAATTCAAGAGCAAACGCAAACGAAATCAAGTGAAAGTG
CGAATAACAAAGAAATATTCAAAATAAAGAAGAAAGCGTCCTGTAAATAA
ACACGAGCAGCGAAAAGTCCGAAGAAAAAACCCATAAGCAACGTTGTGCT
AGCAACAAAATCAACAAAGTGCGCCAGCGGATCGGGAAATCGCGACCGGG
TTGTGCGGGTTGTGGGCTGCAGGCTCTTCAGCTGCCAGTTCAGCTGTCAA
AATGTTTTAGCTGCGATTGAAAAGTGCATAAACCAGCGAAAAGGAGTAAA
CAATAAGCCAGGATAAATGAAAACGCCAAAGCGCGCTTTTCTCTGACTGT
CACTCGCTGTCTCTTCCCTTCTCTGTCTCCCTCTCTCTCTCTCTCTCCCT
GTCGCTGTCTCTGTCGCTCCCCTTCGCGGACTTTCGCCGGAACAGCTGTT
CTCCATCTCTATCTCTATTCACTCGCTCTCGCACTCTCGCGCTCTCCCTC
TCTCGCTGTGGTGTAAGCTTCTCTAGCTTTTCTCCTGCGCCGAAGCGTGT
GTACATAACCTAAAAACAAAACCGCGCTCTGCATGTTGCGGTAGGCGGAC
GGAGGCGTCGCAGTTGCACACACAAGTGCAACAACGGCAACAGAGCGGGG
CGCAGCAGAGCGACGGAGCGGCGACGGAGCAGGAGCAGCGTTGATGCCGT
TGCAGCTGCTGCTGCGCAGCCAGCGACGACAGCAGCAACATCAGTGATAC
AAGGAGCAGCGGCAGCAGCAGCAGCAGCAGCCGCAGCAACGCCAGCAGCA
GCAGCAGCAGCAACAATCAGCAACATCAGCGCCCTGTGTGCACCGACAAT
AATATGAGGAGTGGCAGTTCGGAATTACTACTCGAGCAGCAACAACAAGA
GCTACGGTTACGTAAAATCCGAGAACTGGCTCCGAAAAAGAAAAATGGCA
ATCGGCGCTTTCGTTCGTGGCGGGAACGTGCGCGTTTCTATGGAACCTCG
ACACTGGCCTTCTTCTCGGTGACCGCCGGGGCATCGCTGCTCTTCCTCGT
ACCGCTCTATGTGGATCCGGCGATATCGACGCTTAGCCACGATTTTATCG
AGAAGCCAACGCTGTGCACGACGACGCGTCGCGAGGATCTAGTGGGTATA
TTCAACTGTTCGTGGAGTTCGTGTCGCGAGGGCTGCACCTCCGATTTGTA
CCGCTGCGTGCATATCTATGTGACGTTCATTGAGCAGAACATTACGATAC
CGGAGAATATGACCGATTATAGCAACTTTACGTCCGATATGGAGCAGTCC
GGCGAGGCGACACTGCTTGTCAATATCAAGGGATGCGGCTATCCGCCATC
GGTGACGTGTAAGAACTTTAACGGTTACTACGGCATCGAGGGTGCCATCT
TTCCGTGCTTCTATTCGCGAAAGAACAAGACGGTGGTGCTGACATCGTAC
AACCACGACGACCAGGTGGCCATGATCATTCACTTCTTCGCGGTGCCCTT
TGTGATAACGGTCATCTCGTCCATTGCCCTGTGCATCATGCACTGCGACT
GCCGCTGCAAGAAGGATCGCAGCCACCGACGCAATCGGCCGCAGTGCCGA
AGGCCGCGCATCGAGAATCTCAGTGATACTTCGATATCAACGCGAGTGGA
TATGCTCACGCCTGCTATTGAAGTCTACAAGCCGCCCCTCTGACACAAGG
ACGACACTGTGGAGAGCAATTTAGGGAATCCCTCGACGAGTAGCGACTTC
TAGCAGAACCTCATAGCGAGTCCTGCGGAACTAGCCAAGGATAATCTATT
TGTTCTTCCAACATAGTGTCGGCCCAAGACGAACTTCGAATGGAGATGAA
AAAACGGTGGATCGGTCGATGGGTGATGGCCAAAAAGAAGTGAAGATACG
ACGAGCGAAACTATCAGTGGTTTTAGTGCACCTAGCCGAGCAGAAATGAA
TCAGATTAATGAGAAACAAAAGGACATAGACAGACACACATAAATTAATA
ATTGATCCAACTGAATAATTCCTAAGATTGATTAAATTTAGTTACTTTTT
AGCGTAAATGATTTTTAAACCAGCCGACCGCGGAGGAGAAACCAACAGAA
GTGTTAATCGGTTAATGAAATAGATCGAAGTCTAGTTTTAAGCTGTGGCA
GTGGCAAATGTATTTGTATCTCTAGCCGCGTATGCAACATATATGTATGT
ACATATATGTATGTATGTGTCTGTACGAATAAACCATATGCGAAATTAGG
CAATGTGTAAATTTAGTTAAAAAATGTGAAGAATCATTACGGATGTAAAA
CAATGGCTAAATGAGACAACAAAAACACAACTAAACAGAAACAGAAAATG
CAATGAATAAATTTTGTACTGCTGAAAAAGAGAAACGAGAAAGTGGAAAA
CATGAGAACCTTAACGTTAAGTGTACAATTTTGCATTAGGTAATGAATAA
GTTTGTAATGCATTAGTAATTAAATACAATAAAATGTTCAGCTAATCACA
TGGAAAGCAAAAGCAACCCAAACTACAAATGCAACCAACAAAAAAAAAAA
AAAAAAAAAA

GH24564.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Teh1.b 4561 Teh1.b 23..2782 1..2760 13785 99.9 Plus
Teh1.a 3931 Teh1.a 23..2782 1..2760 13785 99.9 Plus
Teh1-RA 2785 Teh1-RA 25..2784 1..2760 13785 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5690795..5692165 1823..453 6855 100 Minus
chr3R 27901430 chr3R 5653713..5654631 2739..1821 4580 99.9 Minus
chr3R 27901430 chr3R 5693495..5693946 452..1 2215 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9864969..9866339 1823..453 6855 100 Minus
3R 32079331 3R 9827859..9828798 2760..1821 4685 99.9 Minus
3R 32079331 3R 9867668..9868119 452..1 2260 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9605800..9607170 1823..453 6855 100 Minus
3R 31820162 3R 9568690..9569629 2760..1821 4685 99.8 Minus
3R 31820162 3R 9608499..9608950 452..1 2260 100 Minus
X 23527363 X 5761109..5761169 955..1015 200 88.5 Plus
Blast to na_te.dros performed 2019-03-15 23:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6901 967..1151 232 62 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..807 1008..838 178 60.1 Minus
McClintock 6450 McClintock McCLINTOCK 6450bp 831..1284 2143..2598 165 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2636..2835 916..1111 133 57.4 Plus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 2484..2668 2532..2712 131 54.6 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 6262..6398 209..361 125 60.4 Plus

GH24564.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:26:32 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5653713..5654031 2421..2739 100 == Minus
chr3R 5654095..5654628 1824..2357 100 <- Minus
chr3R 5690795..5691587 1031..1823 100 == Minus
chr3R 5691664..5691910 708..954 100 == Minus
chr3R 5691969..5692005 613..649 100 == Minus
chr3R 5692059..5692165 453..559 100 <- Minus
chr3R 5693495..5693946 1..452 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:51:20 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 1..840 1054..1893 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:32 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 1..840 1054..1893 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:04:56 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RB 1..900 1054..1953 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:41 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 1..840 1054..1893 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:13 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RB 1..900 1054..1953 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:19 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 2..2740 1..2739 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:32 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 2..2740 1..2739 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:04:56 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 2..2740 1..2739 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:42 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 2..2740 1..2739 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:13 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
Teh1-RA 2..2740 1..2739 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:26:32 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9864969..9866339 453..1823 100 <- Minus
3R 9827880..9828795 1824..2739 100 <- Minus
3R 9867668..9868119 1..452 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:26:32 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9864969..9866339 453..1823 100 <- Minus
3R 9827880..9828795 1824..2739 100 <- Minus
3R 9867668..9868119 1..452 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:26:32 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9864969..9866339 453..1823 100 <- Minus
3R 9827880..9828795 1824..2739 100 <- Minus
3R 9867668..9868119 1..452 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:04:56 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5653602..5654517 1824..2739 100 <- Minus
arm_3R 5690691..5692061 453..1823 100 <- Minus
arm_3R 5693390..5693841 1..452 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:54 Download gff for GH24564.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9568711..9569626 1824..2739 100 <- Minus
3R 9605800..9607170 453..1823 100 <- Minus
3R 9608499..9608950 1..452 100   Minus

GH24564.pep Sequence

Translation from 1053 to 1892

> GH24564.pep
MRSGSSELLLEQQQQELRLRKIRELAPKKKNGNRRFRSWRERARFYGTST
LAFFSVTAGASLLFLVPLYVDPAISTLSHDFIEKPTLCTTTRREDLVGIF
NCSWSSCREGCTSDLYRCVHIYVTFIEQNITIPENMTDYSNFTSDMEQSG
EATLLVNIKGCGYPPSVTCKNFNGYYGIEGAIFPCFYSRKNKTVVLTSYN
HDDQVAMIIHFFAVPFVITVISSIALCIMHCDCRCKKDRSHRRNRPQCRR
PRIENLSDTSISTRVDMLTPAIEVYKPPL*

GH24564.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17145-PA 279 GF17145-PA 1..279 1..279 1467 97.1 Plus
Dana\GF23881-PA 311 GF23881-PA 69..279 26..237 313 35.3 Plus
Dana\GF10561-PA 455 GF10561-PA 8..110 37..143 204 42.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17316-PA 279 GG17316-PA 1..279 1..279 1498 99.6 Plus
Dere\GG14213-PA 309 GG14213-PA 67..277 26..237 314 35.3 Plus
Dere\GG15201-PA 452 GG15201-PA 8..110 37..143 202 42.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14179-PA 267 GH14179-PA 28..266 18..256 1201 91.2 Plus
Dgri\GH15550-PA 301 GH15550-PA 59..269 26..237 310 34.9 Plus
Dgri\GH15930-PA 464 GH15930-PA 8..110 37..143 202 42.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Teh1-PB 299 CG12806-PB 1..279 1..279 1484 100 Plus
Teh1-PA 279 CG12806-PA 1..279 1..279 1484 100 Plus
Teh2-PA 309 CG15004-PA 82..277 41..237 321 37 Plus
Teh2-PB 313 CG15004-PB 82..277 41..237 321 37 Plus
tipE-PB 452 CG1232-PB 8..110 37..143 206 42.1 Plus
tipE-PA 452 CG1232-PA 8..110 37..143 206 42.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22088-PA 279 GI22088-PA 1..279 1..279 1346 94.6 Plus
Dmoj\GI16825-PA 298 GI16825-PA 56..266 26..237 314 35.3 Plus
Dmoj\GI21413-PA 456 GI21413-PA 8..110 37..143 202 42.1 Plus
Dmoj\GI16579-PA 456 GI16579-PA 8..110 37..143 202 42.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23218-PA 232 GL23218-PA 31..205 82..256 886 90.9 Plus
Dper\GL12833-PA 455 GL12833-PA 8..110 37..143 204 42.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11821-PB 279 GA11821-PB 1..279 1..279 1346 94.6 Plus
Dpse\GA13422-PA 304 GA13422-PA 62..272 26..237 312 35.3 Plus
Dpse\GA11553-PA 455 GA11553-PA 8..110 37..143 204 42.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26201-PA 279 GM26201-PA 1..279 1..279 1501 100 Plus
Dsec\GM14005-PA 309 GM14005-PA 67..277 26..237 314 35.3 Plus
Dsec\GM14633-PA 452 GM14633-PA 8..110 37..143 202 42.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20749-PA 279 GD20749-PA 1..279 1..279 1501 100 Plus
Dsim\GD13286-PA 309 GD13286-PA 67..277 26..237 314 35.3 Plus
Dsim\GD13821-PA 434 GD13821-PA 8..110 37..143 202 42.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24203-PA 279 GJ24203-PA 1..279 1..279 1358 95.3 Plus
Dvir\GJ12573-PA 298 GJ12573-PA 56..266 26..237 309 34.9 Plus
Dvir\GJ12831-PA 485 GJ12831-PA 2..109 32..143 207 41.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14508-PA 321 GK14508-PA 1..321 1..279 1313 83.5 Plus
Dwil\GK10267-PA 302 GK10267-PA 60..270 26..237 313 34.4 Plus
Dwil\GK12714-PA 464 GK12714-PA 8..110 37..143 204 42.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24718-PA 279 GE24718-PA 1..279 1..279 1498 99.6 Plus
Dyak\GE20641-PA 309 GE20641-PA 67..277 26..237 314 35.3 Plus
Dyak\GE21421-PA 452 GE21421-PA 8..110 37..143 202 42.1 Plus

GH24564.hyp Sequence

Translation from 1053 to 1892

> GH24564.hyp
MRSGSSELLLEQQQQELRLRKIRELAPKKKNGNRRFRSWRERARFYGTST
LAFFSVTAGASLLFLVPLYVDPAISTLSHDFIEKPTLCTTTRREDLVGIF
NCSWSSCREGCTSDLYRCVHIYVTFIEQNITIPENMTDYSNFTSDMEQSG
EATLLVNIKGCGYPPSVTCKNFNGYYGIEGAIFPCFYSRKNKTVVLTSYN
HDDQVAMIIHFFAVPFVITVISSIALCIMHCDCRCKKDRSHRRNRPQCRR
PRIENLSDTSISTRVDMLTPAIEVYKPPL*

GH24564.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Teh1-PA 279 CG12806-PA 1..279 1..279 1484 100 Plus
Teh1-PB 299 CG12806-PB 1..279 1..279 1484 100 Plus
Teh2-PA 309 CG15004-PA 82..277 41..237 321 37 Plus
Teh2-PB 313 CG15004-PB 82..277 41..237 321 37 Plus
tipE-PB 452 CG1232-PB 8..110 37..143 206 42.1 Plus