BDGP Sequence Production Resources |
Search the DGRC for GH24627
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 246 |
Well: | 27 |
Vector: | pOT2 |
Associated Gene/Transcript | SMSr-RA |
Protein status: | GH24627.pep: gold |
Preliminary Size: | 2516 |
Sequenced Size: | 2652 |
Gene | Date | Evidence |
---|---|---|
CG8572 | 2001-01-01 | Release 2 assignment |
CG8576 | 2001-01-01 | Release 2 assignment |
CG32380 | 2001-07-04 | Blastp of sequenced clone |
CG32380 | 2003-01-01 | Sim4 clustering to Release 3 |
SMSr | 2008-04-29 | Release 5.5 accounting |
SMSr | 2008-08-15 | Release 5.9 accounting |
SMSr | 2008-12-18 | 5.12 accounting |
2652 bp (2652 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051605
> GH24627.complete CTCCGCTCTGCTCTCTCGCTTGCTCTCTGAACGGAACAACTGAGTAGTCT GAATTTAACAAGTAACCAAACCAAAAATTAAATGTGCTTTTACATCAACA AACGCTGGACGCGCAATAAGTGAGGTGTTAATTATGCGCCGCAGCAGCAA CAGCAGCCAGCAGTGAAAAAATGTTGCACTCCATCTGAGTTCGGCCGCAC AATTGTTTTGGATTTTGGATAAATCGCAAAATTGGAACGAATAAGAAACA GCCAGAAGAACATCGAACGGAAAAAAAAGAAAGCGCGATGTGCGACGGTG AAATTGGCGATCCGGTGACTCAGCCACGTTCCGAGGGCGGTGGATTGGTC ACAATGGATCAGGAGACCCGGACGCACTACCTCGACGCGGCGACAGATAA GCACCTGACCAATGGATCGCCAGATCCAGAGCCCGTGGATCCGCTACTCG TGGCCCAGTGGTCCATCGAGAATGTGACCAGTTGGGCCACCTGCATGGAG CACTTTTCGAGAACACTGCTCGACTGCCTGCGCCAGGAGGCCATCGACGG CGAGGTGCTGCTCTCCCTCACCGAGGAGGATGTACGTGATATGCGCTACA AACTGGGCTACAAACTCACCTTCGGCGAGCTCAAGAAATTCTGGATAGCC GTGCTCAAGCTGCAGCTACTGGTGAAGAACAGCTCTGCGGAATCCGTAAT ACTGGGCATCGAGTGCCATGGGAACGGGAACTCGGTATACATGCCACTAG CCAGCACCGGCTGCGGTCCACCGTCCTCATCCACGTGCCCCTGTCCGCAG GCCGAATGCCCCAGCTATGTGTCCGATTGCGATACCTATTTGCGCATGGG CGGACGCTATGTTCCGCCGGAATACTTCAAGACCGCCATGAGCTTAGGCT ACTCGTTCGTTGTCACCTGGATAACATCGTTAACAATGGTTATTGTGCAC GAGCGGGTTCCGGATATGAAGCGCTATCCGCCGCTGCCGGACATCTTCCT GGACAACGTGCCGCATATTCCGTGGGCCTTTAATATGTGCGAAATAACCG GCTCACTATTGTTCACCATTTGGGTGGTCGTGCTAACCTTCCACAAGTAT AGATTGGTCCTACTGAGGCGATTCTTTGCTCTGGCGGGCACGGTTTTCCT GCTGCGCTGCGTCACCATGTTGATCACGTCGCTGAGCGTACCGGGAACGC ATCTGCAGTGCAGCCAGAAGGACTTTGCCATCGATGATCCCAATGTGGAC ATGGTGGGCGCCTTGATTATCCGCATGTCACGAGCCTATCGCATCTGGAG CGGCCTGGGCATGTCCATTCAGGGAGTGCGGACCTGCGGCGATTATATGT TTAGTGGTCACACGGTGGCCTTGACCCTGCTCAACTTCTTTATCACAGAA TACACGCCGCGGAATCTGTACTTCCTGCACACGCTGACCTGGCTGCTCAA CATGTTTGGCATATTCTTCATCCTGGCTGCCCACGAGCACTACTCCATCG ATGTGTTTGTGGCCTTCTATATCACCTCACGTCTGTTTCTGTACTATCAT ACTCTAGCAAATAACAGGGCTCTCATGCAAAGCGACTCCAAGAGGACGCG TGTTTGGTTTCCCATGTTTAGCTACTTCGAGAGCAGTGTCGATGGAATGG TGCCCAATGAATACGATACACTTGGCTCCCTCATCGATGGGATTATTGAG CAGATCTTCAAGGCCAAGGATCAATTGGCCATATCCGTGAAGCGCTGCTG GCTGGATGCCCCGCTGTCCGGCAATTCATCGGCTCACATGTTTGGCGGAG AATCTGAACAATGTTTGCGCAATGGCACAGCATCGGCCGCTTTCTTTAGT CCTCACCAGTCGCTGATCGGAGGATTGGGTGGTCAGAGGAGCCAGACGCA TTTGAATAGCGCCCAATCCGGGTCCTCCACACCCACACCAGCTACATCGG CGCCGACCAAGAGTTTGCCGACCCAAAAGAAGACCTTCAGGGATGCGAGT GTGGATCCCTTTTCGCGCACGACGTTCGCTGCGGTCCAGCAGGCAGAAAA CGTCAAGGATTCGCCGATGAAGGAAAAGAAGCATCTCTGATTCTCACAGC CATTCGCTCTTCCACATTCGTATATCGATATCGATGTCGCTCTTCGAAAA GCAAACATGCAGAAACTAACCATACCGACTGATATTTTTATTTCGAAATT TCCATCGATCCCCTTCCTTTCACAGCTCTCCCCTGTATTATTGACAGCAT TCTACCATTTGTAGTGCCTTCCGGGTCAGATCCCCCCAGATCATCCACCC ACCATTTAGAAAGTCGTTGTGTCCCCCAAGAGCCTTTCCTTAGTTTACTT GTGGAATTTTATGAATATCGAAGTTTTTTTTAGCCGGGAGATGCTCCACG TCGGCTTTGAATTGATTATGATGATAAGATAGCCCTCCTCATTCCGTTCA ATTGAGTTTTGAACTAAATGTATTTATTATTGAAGACTTTTTAATGCATT ATTATGTAATTGTAAGCATGTGAATCAAGCGTATTTTTAGTTAACTAGTG TTAAGTTTGGAAAGTTTCTGTTGAACGCACAAACACATTAAATAAATCAA AATGAATATTCTCAGAGTCTGGAGAAGCCACTGTAAAAAAAAAAAAAAAA AA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SMSr-RA | 2745 | SMSr-RA | 104..2740 | 1..2637 | 13185 | 100 | Plus |
SMSr.b | 2897 | SMSr.b | 256..2892 | 1..2637 | 13185 | 100 | Plus |
SMSr.a | 2138 | SMSr.a | 898..2133 | 1402..2637 | 6180 | 100 | Plus |
SMSr.a | 2138 | SMSr.a | 1..897 | 1..897 | 4485 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 7366155..7367221 | 2634..1568 | 5320 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 7372726..7373624 | 898..1 | 4400 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 7367510..7368015 | 1401..896 | 2515 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 7367284..7367451 | 1569..1402 | 840 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 7374047..7375116 | 2637..1568 | 5350 | 100 | Minus |
3L | 28110227 | 3L | 7380620..7381517 | 898..1 | 4490 | 100 | Minus |
3L | 28110227 | 3L | 7375405..7375910 | 1401..896 | 2530 | 100 | Minus |
3L | 28110227 | 3L | 7375179..7375346 | 1569..1402 | 840 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7367147..7368216 | 2637..1568 | 5350 | 100 | Minus |
3L | 28103327 | 3L | 7373720..7374617 | 898..1 | 4490 | 100 | Minus |
3L | 28103327 | 3L | 7368505..7369010 | 1401..896 | 2530 | 100 | Minus |
3L | 28103327 | 3L | 7368279..7368446 | 1569..1402 | 840 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7366155..7367220 | 1569..2634 | 99 | <- | Minus |
chr3L | 7367285..7367451 | 1402..1568 | 100 | <- | Minus |
chr3L | 7367510..7368013 | 898..1401 | 99 | <- | Minus |
chr3L | 7372727..7373624 | 1..897 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..1803 | 288..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..1803 | 288..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..1803 | 288..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..1803 | 288..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..1803 | 288..2090 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..2634 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..2634 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..2591 | 44..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..2634 | 1..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SMSr-RA | 1..2591 | 44..2634 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7374050..7375115 | 1569..2634 | 100 | <- | Minus |
3L | 7375180..7375346 | 1402..1568 | 100 | <- | Minus |
3L | 7375405..7375908 | 898..1401 | 100 | <- | Minus |
3L | 7380621..7381517 | 1..897 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7374050..7375115 | 1569..2634 | 100 | <- | Minus |
3L | 7375180..7375346 | 1402..1568 | 100 | <- | Minus |
3L | 7375405..7375908 | 898..1401 | 100 | <- | Minus |
3L | 7380621..7381517 | 1..897 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7374050..7375115 | 1569..2634 | 100 | <- | Minus |
3L | 7375180..7375346 | 1402..1568 | 100 | <- | Minus |
3L | 7375405..7375908 | 898..1401 | 100 | <- | Minus |
3L | 7380621..7381517 | 1..897 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7367150..7368215 | 1569..2634 | 100 | <- | Minus |
arm_3L | 7368280..7368446 | 1402..1568 | 100 | <- | Minus |
arm_3L | 7368505..7369008 | 898..1401 | 100 | <- | Minus |
arm_3L | 7373721..7374617 | 1..897 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7367150..7368215 | 1569..2634 | 100 | <- | Minus |
3L | 7368280..7368446 | 1402..1568 | 100 | <- | Minus |
3L | 7368505..7369008 | 898..1401 | 100 | <- | Minus |
3L | 7373721..7374617 | 1..897 | 100 | Minus |
Translation from 287 to 2089
> GH24627.hyp MCDGEIGDPVTQPRSEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPEPV DPLLVAQWSIENVTSWATCMEHFSRTLLDCLRQEAIDGEVLLSLTEEDVR DMRYKLGYKLTFGELKKFWIAVLKLQLLVKNSSAESVILGIECHGNGNSV YMPLASTGCGPPSSSTCPCPQAECPSYVSDCDTYLRMGGRYVPPEYFKTA MSLGYSFVVTWITSLTMVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNM CEITGSLLFTIWVVVLTFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLS VPGTHLQCSQKDFAIDDPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTC GDYMFSGHTVALTLLNFFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHE HYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRVWFPMFSYFESS VDGMVPNEYDTLGSLIDGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAH MFGGESEQCLRNGTASAAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPT PATSAPTKSLPTQKKTFRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SMSr-PA | 600 | CG32380-PA | 1..600 | 1..600 | 3180 | 100 | Plus |
Translation from 287 to 2089
> GH24627.pep MCDGEIGDPVTQPRSEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPEPV DPLLVAQWSIENVTSWATCMEHFSRTLLDCLRQEAIDGEVLLSLTEEDVR DMRYKLGYKLTFGELKKFWIAVLKLQLLVKNSSAESVILGIECHGNGNSV YMPLASTGCGPPSSSTCPCPQAECPSYVSDCDTYLRMGGRYVPPEYFKTA MSLGYSFVVTWITSLTMVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNM CEITGSLLFTIWVVVLTFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLS VPGTHLQCSQKDFAIDDPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTC GDYMFSGHTVALTLLNFFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHE HYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRVWFPMFSYFESS VDGMVPNEYDTLGSLIDGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAH MFGGESEQCLRNGTASAAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPT PATSAPTKSLPTQKKTFRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23791-PA | 606 | GF23791-PA | 1..595 | 1..582 | 2254 | 71.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14968-PA | 590 | GG14968-PA | 1..590 | 1..600 | 2888 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14877-PA | 614 | GH14877-PA | 1..614 | 1..600 | 1782 | 58 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SMSr-PA | 600 | CG32380-PA | 1..600 | 1..600 | 3180 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12850-PA | 586 | GI12850-PA | 53..529 | 55..512 | 1661 | 66.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24298-PA | 590 | GL24298-PA | 1..590 | 1..600 | 1943 | 64.2 | Plus |
Dper\GL14970-PA | 563 | GL14970-PA | 61..549 | 50..537 | 1587 | 60.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16857-PA | 590 | GA16857-PA | 1..590 | 1..600 | 1948 | 64.3 | Plus |
Dpse\GA22344-PA | 556 | GA22344-PA | 61..542 | 50..537 | 1556 | 59.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13763-PA | 601 | GM13763-PA | 1..601 | 1..600 | 3117 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13061-PA | 560 | GD13061-PA | 1..560 | 1..600 | 2853 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12995-PA | 580 | GJ12995-PA | 39..513 | 37..489 | 1713 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16808-PA | 639 | GK16808-PA | 1..624 | 1..575 | 1959 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20416-PA | 590 | GE20416-PA | 1..590 | 1..600 | 2923 | 93 | Plus |