Clone GH24627 Report

Search the DGRC for GH24627

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:246
Well:27
Vector:pOT2
Associated Gene/TranscriptSMSr-RA
Protein status:GH24627.pep: gold
Preliminary Size:2516
Sequenced Size:2652

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8572 2001-01-01 Release 2 assignment
CG8576 2001-01-01 Release 2 assignment
CG32380 2001-07-04 Blastp of sequenced clone
CG32380 2003-01-01 Sim4 clustering to Release 3
SMSr 2008-04-29 Release 5.5 accounting
SMSr 2008-08-15 Release 5.9 accounting
SMSr 2008-12-18 5.12 accounting

Clone Sequence Records

GH24627.complete Sequence

2652 bp (2652 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051605

> GH24627.complete
CTCCGCTCTGCTCTCTCGCTTGCTCTCTGAACGGAACAACTGAGTAGTCT
GAATTTAACAAGTAACCAAACCAAAAATTAAATGTGCTTTTACATCAACA
AACGCTGGACGCGCAATAAGTGAGGTGTTAATTATGCGCCGCAGCAGCAA
CAGCAGCCAGCAGTGAAAAAATGTTGCACTCCATCTGAGTTCGGCCGCAC
AATTGTTTTGGATTTTGGATAAATCGCAAAATTGGAACGAATAAGAAACA
GCCAGAAGAACATCGAACGGAAAAAAAAGAAAGCGCGATGTGCGACGGTG
AAATTGGCGATCCGGTGACTCAGCCACGTTCCGAGGGCGGTGGATTGGTC
ACAATGGATCAGGAGACCCGGACGCACTACCTCGACGCGGCGACAGATAA
GCACCTGACCAATGGATCGCCAGATCCAGAGCCCGTGGATCCGCTACTCG
TGGCCCAGTGGTCCATCGAGAATGTGACCAGTTGGGCCACCTGCATGGAG
CACTTTTCGAGAACACTGCTCGACTGCCTGCGCCAGGAGGCCATCGACGG
CGAGGTGCTGCTCTCCCTCACCGAGGAGGATGTACGTGATATGCGCTACA
AACTGGGCTACAAACTCACCTTCGGCGAGCTCAAGAAATTCTGGATAGCC
GTGCTCAAGCTGCAGCTACTGGTGAAGAACAGCTCTGCGGAATCCGTAAT
ACTGGGCATCGAGTGCCATGGGAACGGGAACTCGGTATACATGCCACTAG
CCAGCACCGGCTGCGGTCCACCGTCCTCATCCACGTGCCCCTGTCCGCAG
GCCGAATGCCCCAGCTATGTGTCCGATTGCGATACCTATTTGCGCATGGG
CGGACGCTATGTTCCGCCGGAATACTTCAAGACCGCCATGAGCTTAGGCT
ACTCGTTCGTTGTCACCTGGATAACATCGTTAACAATGGTTATTGTGCAC
GAGCGGGTTCCGGATATGAAGCGCTATCCGCCGCTGCCGGACATCTTCCT
GGACAACGTGCCGCATATTCCGTGGGCCTTTAATATGTGCGAAATAACCG
GCTCACTATTGTTCACCATTTGGGTGGTCGTGCTAACCTTCCACAAGTAT
AGATTGGTCCTACTGAGGCGATTCTTTGCTCTGGCGGGCACGGTTTTCCT
GCTGCGCTGCGTCACCATGTTGATCACGTCGCTGAGCGTACCGGGAACGC
ATCTGCAGTGCAGCCAGAAGGACTTTGCCATCGATGATCCCAATGTGGAC
ATGGTGGGCGCCTTGATTATCCGCATGTCACGAGCCTATCGCATCTGGAG
CGGCCTGGGCATGTCCATTCAGGGAGTGCGGACCTGCGGCGATTATATGT
TTAGTGGTCACACGGTGGCCTTGACCCTGCTCAACTTCTTTATCACAGAA
TACACGCCGCGGAATCTGTACTTCCTGCACACGCTGACCTGGCTGCTCAA
CATGTTTGGCATATTCTTCATCCTGGCTGCCCACGAGCACTACTCCATCG
ATGTGTTTGTGGCCTTCTATATCACCTCACGTCTGTTTCTGTACTATCAT
ACTCTAGCAAATAACAGGGCTCTCATGCAAAGCGACTCCAAGAGGACGCG
TGTTTGGTTTCCCATGTTTAGCTACTTCGAGAGCAGTGTCGATGGAATGG
TGCCCAATGAATACGATACACTTGGCTCCCTCATCGATGGGATTATTGAG
CAGATCTTCAAGGCCAAGGATCAATTGGCCATATCCGTGAAGCGCTGCTG
GCTGGATGCCCCGCTGTCCGGCAATTCATCGGCTCACATGTTTGGCGGAG
AATCTGAACAATGTTTGCGCAATGGCACAGCATCGGCCGCTTTCTTTAGT
CCTCACCAGTCGCTGATCGGAGGATTGGGTGGTCAGAGGAGCCAGACGCA
TTTGAATAGCGCCCAATCCGGGTCCTCCACACCCACACCAGCTACATCGG
CGCCGACCAAGAGTTTGCCGACCCAAAAGAAGACCTTCAGGGATGCGAGT
GTGGATCCCTTTTCGCGCACGACGTTCGCTGCGGTCCAGCAGGCAGAAAA
CGTCAAGGATTCGCCGATGAAGGAAAAGAAGCATCTCTGATTCTCACAGC
CATTCGCTCTTCCACATTCGTATATCGATATCGATGTCGCTCTTCGAAAA
GCAAACATGCAGAAACTAACCATACCGACTGATATTTTTATTTCGAAATT
TCCATCGATCCCCTTCCTTTCACAGCTCTCCCCTGTATTATTGACAGCAT
TCTACCATTTGTAGTGCCTTCCGGGTCAGATCCCCCCAGATCATCCACCC
ACCATTTAGAAAGTCGTTGTGTCCCCCAAGAGCCTTTCCTTAGTTTACTT
GTGGAATTTTATGAATATCGAAGTTTTTTTTAGCCGGGAGATGCTCCACG
TCGGCTTTGAATTGATTATGATGATAAGATAGCCCTCCTCATTCCGTTCA
ATTGAGTTTTGAACTAAATGTATTTATTATTGAAGACTTTTTAATGCATT
ATTATGTAATTGTAAGCATGTGAATCAAGCGTATTTTTAGTTAACTAGTG
TTAAGTTTGGAAAGTTTCTGTTGAACGCACAAACACATTAAATAAATCAA
AATGAATATTCTCAGAGTCTGGAGAAGCCACTGTAAAAAAAAAAAAAAAA
AA

GH24627.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
SMSr-RA 2745 SMSr-RA 104..2740 1..2637 13185 100 Plus
SMSr.b 2897 SMSr.b 256..2892 1..2637 13185 100 Plus
SMSr.a 2138 SMSr.a 898..2133 1402..2637 6180 100 Plus
SMSr.a 2138 SMSr.a 1..897 1..897 4485 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7366155..7367221 2634..1568 5320 99.9 Minus
chr3L 24539361 chr3L 7372726..7373624 898..1 4400 99.6 Minus
chr3L 24539361 chr3L 7367510..7368015 1401..896 2515 99.8 Minus
chr3L 24539361 chr3L 7367284..7367451 1569..1402 840 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:58:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7374047..7375116 2637..1568 5350 100 Minus
3L 28110227 3L 7380620..7381517 898..1 4490 100 Minus
3L 28110227 3L 7375405..7375910 1401..896 2530 100 Minus
3L 28110227 3L 7375179..7375346 1569..1402 840 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7367147..7368216 2637..1568 5350 100 Minus
3L 28103327 3L 7373720..7374617 898..1 4490 100 Minus
3L 28103327 3L 7368505..7369010 1401..896 2530 100 Minus
3L 28103327 3L 7368279..7368446 1569..1402 840 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:59:00 has no hits.

GH24627.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:59:42 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7366155..7367220 1569..2634 99 <- Minus
chr3L 7367285..7367451 1402..1568 100 <- Minus
chr3L 7367510..7368013 898..1401 99 <- Minus
chr3L 7372727..7373624 1..897 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:14 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..1803 288..2090 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:45 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..1803 288..2090 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:04:19 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..1803 288..2090 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:41 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..1803 288..2090 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:25 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..1803 288..2090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:14:58 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..2634 1..2634 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:45 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..2634 1..2634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:04:19 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..2591 44..2634 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:42 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..2634 1..2634 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:25 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
SMSr-RA 1..2591 44..2634 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:42 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7374050..7375115 1569..2634 100 <- Minus
3L 7375180..7375346 1402..1568 100 <- Minus
3L 7375405..7375908 898..1401 100 <- Minus
3L 7380621..7381517 1..897 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:42 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7374050..7375115 1569..2634 100 <- Minus
3L 7375180..7375346 1402..1568 100 <- Minus
3L 7375405..7375908 898..1401 100 <- Minus
3L 7380621..7381517 1..897 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:59:42 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7374050..7375115 1569..2634 100 <- Minus
3L 7375180..7375346 1402..1568 100 <- Minus
3L 7375405..7375908 898..1401 100 <- Minus
3L 7380621..7381517 1..897 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:04:19 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7367150..7368215 1569..2634 100 <- Minus
arm_3L 7368280..7368446 1402..1568 100 <- Minus
arm_3L 7368505..7369008 898..1401 100 <- Minus
arm_3L 7373721..7374617 1..897 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:31 Download gff for GH24627.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7367150..7368215 1569..2634 100 <- Minus
3L 7368280..7368446 1402..1568 100 <- Minus
3L 7368505..7369008 898..1401 100 <- Minus
3L 7373721..7374617 1..897 100   Minus

GH24627.hyp Sequence

Translation from 287 to 2089

> GH24627.hyp
MCDGEIGDPVTQPRSEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPEPV
DPLLVAQWSIENVTSWATCMEHFSRTLLDCLRQEAIDGEVLLSLTEEDVR
DMRYKLGYKLTFGELKKFWIAVLKLQLLVKNSSAESVILGIECHGNGNSV
YMPLASTGCGPPSSSTCPCPQAECPSYVSDCDTYLRMGGRYVPPEYFKTA
MSLGYSFVVTWITSLTMVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNM
CEITGSLLFTIWVVVLTFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLS
VPGTHLQCSQKDFAIDDPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTC
GDYMFSGHTVALTLLNFFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHE
HYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRVWFPMFSYFESS
VDGMVPNEYDTLGSLIDGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAH
MFGGESEQCLRNGTASAAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPT
PATSAPTKSLPTQKKTFRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL
*

GH24627.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
SMSr-PA 600 CG32380-PA 1..600 1..600 3180 100 Plus

GH24627.pep Sequence

Translation from 287 to 2089

> GH24627.pep
MCDGEIGDPVTQPRSEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPEPV
DPLLVAQWSIENVTSWATCMEHFSRTLLDCLRQEAIDGEVLLSLTEEDVR
DMRYKLGYKLTFGELKKFWIAVLKLQLLVKNSSAESVILGIECHGNGNSV
YMPLASTGCGPPSSSTCPCPQAECPSYVSDCDTYLRMGGRYVPPEYFKTA
MSLGYSFVVTWITSLTMVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNM
CEITGSLLFTIWVVVLTFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLS
VPGTHLQCSQKDFAIDDPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTC
GDYMFSGHTVALTLLNFFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHE
HYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRVWFPMFSYFESS
VDGMVPNEYDTLGSLIDGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAH
MFGGESEQCLRNGTASAAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPT
PATSAPTKSLPTQKKTFRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL
*

GH24627.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23791-PA 606 GF23791-PA 1..595 1..582 2254 71.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14968-PA 590 GG14968-PA 1..590 1..600 2888 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14877-PA 614 GH14877-PA 1..614 1..600 1782 58 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
SMSr-PA 600 CG32380-PA 1..600 1..600 3180 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12850-PA 586 GI12850-PA 53..529 55..512 1661 66.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24298-PA 590 GL24298-PA 1..590 1..600 1943 64.2 Plus
Dper\GL14970-PA 563 GL14970-PA 61..549 50..537 1587 60.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16857-PA 590 GA16857-PA 1..590 1..600 1948 64.3 Plus
Dpse\GA22344-PA 556 GA22344-PA 61..542 50..537 1556 59.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13763-PA 601 GM13763-PA 1..601 1..600 3117 96.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13061-PA 560 GD13061-PA 1..560 1..600 2853 89.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12995-PA 580 GJ12995-PA 39..513 37..489 1713 67.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16808-PA 639 GK16808-PA 1..624 1..575 1959 62 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20416-PA 590 GE20416-PA 1..590 1..600 2923 93 Plus