Clone GH24644 Report

Search the DGRC for GH24644

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:246
Well:44
Vector:pOT2
Associated Gene/TranscriptCG8735-RA
Protein status:GH24644.pep: gold
Preliminary Size:1508
Sequenced Size:1435

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8735 2001-01-01 Release 2 assignment
CG8735 2001-10-10 Blastp of sequenced clone
CG8735 2003-01-01 Sim4 clustering to Release 3
CG8735 2008-04-29 Release 5.5 accounting
CG8735 2008-08-15 Release 5.9 accounting
CG8735 2008-12-18 5.12 accounting

Clone Sequence Records

GH24644.complete Sequence

1435 bp (1435 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060779

> GH24644.complete
AAATAATATCTAGGCAAGCGGGCGGTTAAATAGCAAAATAGTCAAGTAAA
TGTCTAAGTTTGTTCGTTTCTAGTTAAATTGCGGATCATACACCATGGGA
TTTGTGTTATCCAAGCTGCGGAAAGAAAAGTCCACGGAGGCGGTGTTGGA
GGGGCTGCAGACGCAGATCCAAGCGTTGGAGAAGTACATGATCAACACCG
AGGAGCGCAAGCGCCGGTTCGTGACGAACTTCGTGGGCTTCACCATCGGA
GCATATATCGTGGGCTTCGGGCTCTGGTGGTACTTCTACTTCCCGCCGAC
CATGCAGGAGTGCTTCATGTACCTGGTACCGCTGCTGCTATTCCCCATTG
TCATCATCTTTCTGCGGCGGCTGTTTACGTGGTACTTCCAGCGCAAGCTC
AACAAAAATGGCGATAAGCTGACTCGTCTGAAGGAGGACAAGCGCAAGAT
ATTGGAGCAGGTCATGGACAAAGAGACCTATAAGGTGGCGGTGAATCTCC
TGGAGCGTTTTGGCGACAAGAAGCAGCTCCGCATCAGCGGTCTGCCGACC
GGCTCAACGCCCAACCGCCCGCAAGTTGAGCGGTCTCCACTGACCGTCGC
TGCCGTCGCACGAACTTCATCAGCCGGAGGACAGCAGCAGCAGCAGCGCT
CGCTGGCTCCATACACCAGTGTTTACCGCAACAATAACAACAACCAGAAC
ACATCGCTGAACAGCAGCGTCATCAGCACACATTCACTGGGACAGATGAC
GTCAGCTTCGCCGCAGTTGCGCGCCGTTCAAGAATTGCGACGGCGATCGC
CTTTTCCCATCGTGGACGATCGATCACGAAGTGCCATCGATCGCATTGTG
GACTTCATCGTGGGTGACAGTCCAAAGGATCGATTCGGCATGATCTGCAA
GGCGTGCCACGCCCACAACGGAATGCTGCCGAAGGAGGAGTACGAGTACA
CTACCTTCCGGTGTGCCTTCTGCAATGTACTTAACCCGGCAAGGAAGAAG
CGACCCGTGGCTCCCCGGCTATCCCTTGAGGCACCCTCGGATACCGCAAA
CAAGCGAAACGATAGCTCAGAAAGTGAATCATCCGACGATGACTCTGATA
AAGAGCCATCTGCACGCAGAGCCCTGCTTCAAAAGCTGCCATCTGGTGGA
GCTGATATGGATGCCACCGCCGAAACGGAAGACTTGGCAATGGAGACTGA
GACAATCGAGACTGGATCTGCAGCCCCCAGCACAGCTGAGGTGGCTGCCA
GCTCCTGAGGGCACCTCGCCTTTTAGGCGCCAGTCAAGCAAAATTCTTGG
ATTATTTGCTTTTAGCTTACTTATTTAATTGTTTATTGGTAAGCAAATTT
GAAAAAGAATCATCTGTTATCATGAATTTATTGTCGAAAAAAAAAACGAA
TACATTGAATGGAATACAAAAAAAAAAAAAAAAAA

GH24644.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-RA 1669 CG8735-RA 42..1459 1..1418 7090 100 Plus
CG8735.b 1992 CG8735.b 20..1437 1..1418 7090 100 Plus
CG8735.a 1442 CG8735.a 47..1396 69..1418 6750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4486173..4486611 921..483 2195 100 Minus
chr2R 21145070 chr2R 4485130..4485450 1417..1097 1605 100 Minus
chr2R 21145070 chr2R 4487074..4487304 351..121 1155 100 Minus
chr2R 21145070 chr2R 4485715..4485892 1097..920 890 100 Minus
chr2R 21145070 chr2R 4486869..4487005 488..352 685 100 Minus
chr2R 21145070 chr2R 4487413..4487533 121..1 605 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8598571..8599009 921..483 2195 100 Minus
2R 25286936 2R 8597527..8597848 1418..1097 1610 100 Minus
2R 25286936 2R 8599472..8599702 351..121 1155 100 Minus
2R 25286936 2R 8598113..8598290 1097..920 890 100 Minus
2R 25286936 2R 8599267..8599403 488..352 685 100 Minus
2R 25286936 2R 8599811..8599931 121..1 605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8599770..8600208 921..483 2195 100 Minus
2R 25260384 2R 8598726..8599047 1418..1097 1610 100 Minus
2R 25260384 2R 8600671..8600901 351..121 1155 100 Minus
2R 25260384 2R 8599312..8599489 1097..920 890 100 Minus
2R 25260384 2R 8600466..8600602 488..352 685 100 Minus
2R 25260384 2R 8601010..8601130 121..1 605 100 Minus
Blast to na_te.dros performed 2019-03-16 17:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 189..242 80..27 135 72.2 Minus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 5058..5109 80..29 125 71.2 Minus

GH24644.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:53:22 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4485130..4485449 1098..1417 100 <- Minus
chr2R 4485715..4485891 921..1097 100 <- Minus
chr2R 4486174..4486609 485..920 100 <- Minus
chr2R 4486873..4487005 352..484 100 <- Minus
chr2R 4487074..4487303 122..351 100 <- Minus
chr2R 4487413..4487533 1..121 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:16 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1164 95..1258 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:21 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1164 95..1258 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:02:24 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1164 95..1258 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:14 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1164 95..1258 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:25 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1164 95..1258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:57 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1417 1..1417 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:21 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1417 1..1417 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:02:24 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 32..1448 1..1417 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:14 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 1..1417 1..1417 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:25 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
CG8735-RA 32..1448 1..1417 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:53:22 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8597528..8597847 1098..1417 100 <- Minus
2R 8598113..8598289 921..1097 100 <- Minus
2R 8598572..8599007 485..920 100 <- Minus
2R 8599271..8599403 352..484 100 <- Minus
2R 8599472..8599701 122..351 100 <- Minus
2R 8599811..8599931 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:53:22 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8597528..8597847 1098..1417 100 <- Minus
2R 8598113..8598289 921..1097 100 <- Minus
2R 8598572..8599007 485..920 100 <- Minus
2R 8599271..8599403 352..484 100 <- Minus
2R 8599472..8599701 122..351 100 <- Minus
2R 8599811..8599931 1..121 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:53:22 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8597528..8597847 1098..1417 100 <- Minus
2R 8598113..8598289 921..1097 100 <- Minus
2R 8598572..8599007 485..920 100 <- Minus
2R 8599271..8599403 352..484 100 <- Minus
2R 8599472..8599701 122..351 100 <- Minus
2R 8599811..8599931 1..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:02:24 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4485033..4485352 1098..1417 100 <- Minus
arm_2R 4485618..4485794 921..1097 100 <- Minus
arm_2R 4486077..4486512 485..920 100 <- Minus
arm_2R 4486776..4486908 352..484 100 <- Minus
arm_2R 4486977..4487206 122..351 100 <- Minus
arm_2R 4487316..4487436 1..121 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:14 Download gff for GH24644.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8598727..8599046 1098..1417 100 <- Minus
2R 8599312..8599488 921..1097 100 <- Minus
2R 8599771..8600206 485..920 100 <- Minus
2R 8600470..8600602 352..484 100 <- Minus
2R 8600671..8600900 122..351 100 <- Minus
2R 8601010..8601130 1..121 100   Minus

GH24644.pep Sequence

Translation from 94 to 1257

> GH24644.pep
MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFT
IGAYIVGFGLWWYFYFPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQR
KLNKNGDKLTRLKEDKRKILEQVMDKETYKVAVNLLERFGDKKQLRISGL
PTGSTPNRPQVERSPLTVAAVARTSSAGGQQQQQRSLAPYTSVYRNNNNN
QNTSLNSSVISTHSLGQMTSASPQLRAVQELRRRSPFPIVDDRSRSAIDR
IVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLNPAR
KKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPS
GGADMDATAETEDLAMETETIETGSAAPSTAEVAASS*

GH24644.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12574-PA 384 GF12574-PA 1..384 1..387 1450 80.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10630-PA 387 GG10630-PA 1..387 1..387 1714 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22144-PA 392 GH22144-PA 1..388 1..380 1080 62.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
Lnpk-PB 387 CG8735-PB 1..387 1..387 1984 100 Plus
Lnpk-PA 387 CG8735-PA 1..387 1..387 1984 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19374-PA 405 GI19374-PA 1..395 1..387 1045 59.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11019-PA 398 GL11019-PA 1..363 1..372 1079 63.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21290-PA 398 GA21290-PA 1..363 1..372 1076 63.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20675-PA 389 GM20675-PA 1..389 1..387 1791 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10154-PA 547 GD10154-PA 1..334 1..334 1769 97 Plus
Dsim\GD10154-PA 547 GD10154-PA 335..547 177..387 904 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19932-PA 414 GJ19932-PA 1..390 1..376 1129 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23211-PA 410 GK23211-PA 1..359 1..363 1066 62.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22890-PA 388 GE22890-PA 1..388 1..387 1719 90.8 Plus

GH24644.hyp Sequence

Translation from 94 to 1257

> GH24644.hyp
MGFVLSKLRKEKSTEAVLEGLQTQIQALEKYMINTEERKRRFVTNFVGFT
IGAYIVGFGLWWYFYFPPTMQECFMYLVPLLLFPIVIIFLRRLFTWYFQR
KLNKNGDKLTRLKEDKRKILEQVMDKETYKVAVNLLERFGDKKQLRISGL
PTGSTPNRPQVERSPLTVAAVARTSSAGGQQQQQRSLAPYTSVYRNNNNN
QNTSLNSSVISTHSLGQMTSASPQLRAVQELRRRSPFPIVDDRSRSAIDR
IVDFIVGDSPKDRFGMICKACHAHNGMLPKEEYEYTTFRCAFCNVLNPAR
KKRPVAPRLSLEAPSDTANKRNDSSESESSDDDSDKEPSARRALLQKLPS
GGADMDATAETEDLAMETETIETGSAAPSTAEVAASS*

GH24644.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8735-PB 387 CG8735-PB 1..387 1..387 1984 100 Plus
CG8735-PA 387 CG8735-PA 1..387 1..387 1984 100 Plus