Clone GH24674 Report

Search the DGRC for GH24674

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:246
Well:74
Vector:pOT2
Associated Gene/TranscriptCG3239-RC
Protein status:GH24674.pep: wuzgold
Preliminary Size:1871
Sequenced Size:1926

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3239 2001-01-01 Release 2 assignment
CG3239 2001-09-19 Blastp of sequenced clone
CG3239 2003-01-01 Sim4 clustering to Release 3
CG3239 2008-04-29 Release 5.5 accounting
CG3239 2008-08-15 Release 5.9 accounting
CG3239 2008-12-18 5.12 accounting

Clone Sequence Records

GH24674.complete Sequence

1926 bp (1926 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058454

> GH24674.complete
AGATTGCTGGAGCTCATCGTTGGCTTACTTGTAGTTCAGGTAAAGTCGCA
TCCGCAAGCTGATCCCTGCCAGAATTTCTATAAGGTGGCCTGCGGCAATT
GGTCCGCCAGTCATGCAACCGATTCGTACGAAAGTTTTATGGACCGACTG
GACTACAATTATCAGGAGAAGTTGGCAGACTTGCTGGATAATGAAAGAGA
GGACGACGAGCCACATTTTCTGCAGCAGTTGAGGAACTTTTACACCGCCT
GTCGAAAACCTTTGAGCCAGGATCAAGTCCTGCGCATACTGGAGCATCTG
ATCGTAATGGAGAATATCCAAAATGAAGAGCTGTCCGTCGGCTTGACTGC
CGCCTTTCGTCTTCAAGTACTCATAGATCTAAATGACTCCAATACGTATG
ACATTTGGAAGCAGTTGATGTCCCACAGGAAGCATTGGGATCCAAATACA
ACGAACAGGGAACCCTTAACTCGCGAAATGTTTGACAAGCTATGGGCCAG
CCTGCCAAAAATTCCCTTTCCGTTTAAGGAGTACTATTGGCGCGAATTAA
GCGAGCTGGAAGAGAAAATAATGAGCTATGGAAGCGAGGACGATGGCTTT
GATAGCGGTGATTTGGTTACGCGGATACCACCCTTTTGGATGATGCCCTG
GCCAAATGGGAATATTACCTATGAAAATCTTTCCCAGATGGCCCATTGGC
TGGATATAAAAGCCAATGAGTTCATTCTCACATATATCTATATGCGATTA
AAGCTAGTTGCGGAAGGAGTCTCAACGGAATCCTGGCATATAGATCGCGA
CCAGTGCGCCGAGCAGTCCAGACAGATCCTCAGTCATCCTGCTGCATGGT
TGGTAGAGAAGAATCATCCCAGGCTCAAGGAGGAGCCAGTGCTGCAGGAC
ATTTTCGCGGAGCTGAAGCAGCGCTTTGGCCAAAAGCTTCTGGCGAACAG
GAATAACTTTACTCGCAGCACACAGCACTTTCTTTTGGGCAAATTGAAAA
GGATGCGGCTGCGATTGAGCATCCTGCCCAGAAATTCTTCGGCCCAATCC
ATGGTGCGACGCATCGAAAGGCACTACAGGGATGTTCACATGAATGCTAG
CGATTATTTTGGAAATCTACATATCGGCCTTAATCACTCCAGATCCCACA
AGAAGTACGCCCAACTATGGGCCATAGTCTTCGGCCGCCAGTTGATTCCA
AGCCGAATATCCAAGAGCGATTTGTATCCCACCCAAGTGCGTGGGTATGG
CACCTATGCCTCTGCGTTCTACATAGTCAAACAGAATATGCTAATTGTGC
CACTATCGCTCCTGGAACCGCCGTTCTACACACATGGCCAGCCGTCGATA
CTTACCTACAGTGCACTGGGCTTCATCCTGGGCCACGAGCTCTCGCACGG
CTTTGATTCCGAGGGCATGACCTTCTCCTCGCACGGAGTGGGAAGTAGCG
CCGTGGACAGGGAGCTTGATAGGAATCCGCGATTCCAGCAGGAGCTTGGC
TGTTTGCGCAGAAGATTCGGGAGGAAGCGGTATGAAAAGTTCGCGGACGC
CAGTGGCTTGGAACTGGCCTATTCCGCCTACTTTGACACCGCACAAACGG
ATCATAAGCGGAATCGAAGTGCCGAGGAGTTGGTCACTCAGAAGCAGCAG
TTCTTTCATAACTTTGCCCAATTCTTCTGCTCCGATAAGGAGCTCTTGCA
GGCGCACGATCATGGCAGCGATAGGAAGAGGGTCAACGATGCAGTTGCCC
ACTTTGAGCCATTTCGGGAGGCCTTCTCCTGTGGCCCCTCGCCCAGGCGA
AGGCAGTGTCGATTGTATTAGCAAATGCCTGGATCAACGAACTTTTAGAA
CGATTGATGAATAAATTGCAATTTATTCTCCTAATATACTTACGAATGTT
TACACACCAAAAAAAAAAAAAAAAAA

GH24674.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3239-RA 1964 CG3239-RA 28..1952 1..1925 9625 100 Plus
CG3239.a 2396 CG3239.a 8..1932 1..1925 9625 100 Plus
CG3239-RB 1791 CG3239-RB 59..1789 195..1925 8655 100 Plus
CG3239-RB 1791 CG3239-RB 20..58 1..39 195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5386481..5388194 1908..195 8510 99.8 Minus
chrX 22417052 chrX 5388259..5388452 194..1 970 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5494042..5495772 1925..195 8655 100 Minus
X 23542271 X 5495837..5496030 194..1 970 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5502140..5503870 1925..195 8655 100 Minus
X 23527363 X 5503935..5504128 194..1 970 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:34:30 has no hits.

GH24674.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:35:24 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5386481..5388194 195..1908 99 <- Minus
chrX 5388259..5388452 1..194 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:21 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RA 1..1683 139..1821 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:17 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RA 1..1683 139..1821 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:32 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RC 1..1182 640..1821 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:59 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RA 1..1683 139..1821 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:40:03 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
frma-RF 16..1836 1..1821 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:43 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RA 1..1908 1..1908 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:17 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RA 1..1908 1..1908 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:32 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RC 1..1908 1..1908 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:59 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
CG3239-RA 1..1908 1..1908 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:40:03 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
frma-RF 23..1930 1..1908 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:35:24 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
X 5494059..5495772 195..1908 100 <- Minus
X 5495837..5496030 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:35:24 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
X 5494059..5495772 195..1908 100 <- Minus
X 5495837..5496030 1..194 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:35:24 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
X 5494059..5495772 195..1908 100 <- Minus
X 5495837..5496030 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:32 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5388092..5389805 195..1908 100 <- Minus
arm_X 5389870..5390063 1..194 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:13:01 Download gff for GH24674.complete
Subject Subject Range Query Range Percent Splice Strand
X 5502157..5503870 195..1908 100 <- Minus
X 5503935..5504128 1..194 100   Minus

GH24674.hyp Sequence

Translation from 0 to 1820

> GH24674.hyp
RLLELIVGLLVVQVKSHPQADPCQNFYKVACGNWSASHATDSYESFMDRL
DYNYQEKLADLLDNEREDDEPHFLQQLRNFYTACRKPLSQDQVLRILEHL
IVMENIQNEELSVGLTAAFRLQVLIDLNDSNTYDIWKQLMSHRKHWDPNT
TNREPLTREMFDKLWASLPKIPFPFKEYYWRELSELEEKIMSYGSEDDGF
DSGDLVTRIPPFWMMPWPNGNITYENLSQMAHWLDIKANEFILTYIYMRL
KLVAEGVSTESWHIDRDQCAEQSRQILSHPAAWLVEKNHPRLKEEPVLQD
IFAELKQRFGQKLLANRNNFTRSTQHFLLGKLKRMRLRLSILPRNSSAQS
MVRRIERHYRDVHMNASDYFGNLHIGLNHSRSHKKYAQLWAIVFGRQLIP
SRISKSDLYPTQVRGYGTYASAFYIVKQNMLIVPLSLLEPPFYTHGQPSI
LTYSALGFILGHELSHGFDSEGMTFSSHGVGSSAVDRELDRNPRFQQELG
CLRRRFGRKRYEKFADASGLELAYSAYFDTAQTDHKRNRSAEELVTQKQQ
FFHNFAQFFCSDKELLQAHDHGSDRKRVNDAVAHFEPFREAFSCGPSPRR
RQCRLY*

GH24674.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
frma-PG 611 CG3239-PG 6..611 1..606 3230 100 Plus
frma-PF 611 CG3239-PF 6..611 1..606 3230 100 Plus
CG9507-PA 684 CG9507-PA 35..684 9..606 382 23.7 Plus
CG8550-PA 633 CG8550-PA 42..612 22..598 360 26.2 Plus
CG42370-PA 655 CG9508-PA 295..655 234..606 350 27.4 Plus

GH24674.pep Sequence

Translation from 138 to 1820

> GH24674.pep
MDRLDYNYQEKLADLLDNEREDDEPHFLQQLRNFYTACRKPLSQDQVLRI
LEHLIVMENIQNEELSVGLTAAFRLQVLIDLNDSNTYDIWKQLMSHRKHW
DPNTTNREPLTREMFDKLWASLPKIPFPFKEYYWRELSELEEKIMSYGSE
DDGFDSGDLVTRIPPFWMMPWPNGNITYENLSQMAHWLDIKANEFILTYI
YMRLKLVAEGVSTESWHIDRDQCAEQSRQILSHPAAWLVEKNHPRLKEEP
VLQDIFAELKQRFGQKLLANRNNFTRSTQHFLLGKLKRMRLRLSILPRNS
SAQSMVRRIERHYRDVHMNASDYFGNLHIGLNHSRSHKKYAQLWAIVFGR
QLIPSRISKSDLYPTQVRGYGTYASAFYIVKQNMLIVPLSLLEPPFYTHG
QPSILTYSALGFILGHELSHGFDSEGMTFSSHGVGSSAVDRELDRNPRFQ
QELGCLRRRFGRKRYEKFADASGLELAYSAYFDTAQTDHKRNRSAEELVT
QKQQFFHNFAQFFCSDKELLQAHDHGSDRKRVNDAVAHFEPFREAFSCGP
SPRRRQCRLY*

GH24674.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21195-PA 615 GF21195-PA 68..615 1..560 1164 43.5 Plus
Dana\GF15392-PA 656 GF15392-PA 294..656 188..560 353 27 Plus
Dana\GF14519-PA 682 GF14519-PA 299..682 175..560 337 26.1 Plus
Dana\GF12516-PA 549 GF12516-PA 254..529 263..551 303 30.2 Plus
Dana\GF17017-PA 691 GF17017-PA 321..691 196..560 239 25.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18496-PA 645 GG18496-PA 85..645 1..560 2114 71.2 Plus
Dere\GG10409-PA 692 GG10409-PA 310..692 175..560 345 27.2 Plus
Dere\GG20308-PA 632 GG20308-PA 324..610 252..551 287 29.4 Plus
Dere\GG19262-PA 790 GG19262-PA 535..790 309..560 225 25.2 Plus
Dere\GG11622-PA 699 GG11622-PA 487..699 378..560 199 29.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24757-PA 637 GH24757-PA 61..637 1..560 679 33.7 Plus
Dgri\GH10747-PA 713 GH10747-PA 357..713 201..560 393 29.7 Plus
Dgri\GH21315-PA 613 GH21315-PA 62..609 2..560 334 24.8 Plus
Dgri\GH13639-PA 635 GH13639-PA 265..619 174..548 288 27.6 Plus
Dgri\GH10990-PA 647 GH10990-PA 328..635 223..551 246 28 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
frma-PG 611 CG3239-PG 52..611 1..560 2984 100 Plus
frma-PF 611 CG3239-PF 52..611 1..560 2984 100 Plus
Nepl6-PA 655 CG9508-PA 295..655 188..560 350 27.4 Plus
Nepl5-PA 684 CG9507-PA 324..684 201..560 336 27.3 Plus
Nepl10-PA 633 CG8550-PA 65..612 2..552 316 24.7 Plus
Nepl18-PA 682 CG14528-PA 345..682 223..560 245 24 Plus
Nepl8-PA 619 CG4580-PA 352..619 252..559 242 26.9 Plus
Nepl21-PC 707 CG14526-PC 337..692 196..548 222 23.4 Plus
Nep3-PC 786 CG9565-PC 581..776 375..553 216 29.3 Plus
Nep3-PB 786 CG9565-PB 581..776 375..553 216 29.3 Plus
Nep3-PA 786 CG9565-PA 581..776 375..553 216 29.3 Plus
Nepl17-PA 681 CG14529-PA 343..681 218..560 212 24.4 Plus
Nepl20-PA 700 CG14527-PA 333..685 201..548 211 22.6 Plus
Nep7-PA 717 CG5527-PA 496..717 371..560 210 29.2 Plus
Nepl4-PA 652 CG9505-PA 334..637 223..548 199 24.6 Plus
Nepl12-PA 702 CG8358-PA 485..702 371..560 187 29.1 Plus
Nep1-PD 849 CG5905-PD 643..834 375..548 179 26 Plus
Nep1-PC 849 CG5905-PC 643..834 375..548 179 26 Plus
Nep1-PA 849 CG5905-PA 643..834 375..548 179 26 Plus
Nep1-PB 849 CG5905-PB 643..834 375..548 179 26 Plus
Nep5-PD 882 CG6265-PD 528..882 201..560 178 21.1 Plus
Nep4-PC 978 CG4058-PC 769..978 375..560 176 26.2 Plus
Nep4-PB 978 CG4058-PB 769..978 375..560 176 26.2 Plus
Nep4-PA 1040 CG4058-PA 831..1040 375..560 176 26.2 Plus
Nepl7-PB 669 CG15485-PB 283..654 171..548 172 23.7 Plus
Nepl7-PA 669 CG15485-PA 283..654 171..548 172 23.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14838-PA 655 GI14838-PA 324..655 220..560 608 41.3 Plus
Dmoj\GI11574-PA 689 GI11574-PA 335..689 201..560 369 29.3 Plus
Dmoj\GI17503-PA 863 GI17503-PA 566..847 252..548 309 29.1 Plus
Dmoj\GI19748-PA 582 GI19748-PA 277..562 252..548 288 30.3 Plus
Dmoj\GI17505-PA 662 GI17505-PA 343..650 223..551 237 26.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16558-PA 580 GL16558-PA 67..580 1..560 708 34.2 Plus
Dper\GL26263-PA 958 GL26263-PA 656..958 249..560 348 29 Plus
Dper\GL25525-PA 676 GL25525-PA 322..676 201..560 321 27.5 Plus
Dper\GL10114-PA 919 GL10114-PA 279..595 200..524 258 28.2 Plus
Dper\GL24195-PA 709 GL24195-PA 395..709 252..560 207 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16864-PA 616 GA16864-PA 67..616 1..560 996 41.5 Plus
Dpse\GA28099-PA 956 GA28099-PA 654..956 249..560 349 29.2 Plus
Dpse\GA21842-PA 676 GA21842-PA 322..676 201..560 321 27.5 Plus
Dpse\GA21158-PA 634 GA21158-PA 279..619 200..550 289 29 Plus
Dpse\GA26947-PA 666 GA26947-PA 329..666 223..560 251 23.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12644-PA 599 GM12644-PA 52..599 1..560 2393 80 Plus
Dsec\GM17944-PA 948 GM17944-PA 588..948 188..560 361 27.4 Plus
Dsec\GM18625-PA 684 GM18625-PA 302..684 175..560 341 26.9 Plus
Dsec\GM21396-PA 633 GM21396-PA 327..612 254..552 292 29.3 Plus
Dsec\GM17181-PA 202 GM17181-PA 4..202 351..560 282 32.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16259-PA 611 GD16259-PA 52..611 1..560 2484 82.5 Plus
Dsim\GD22581-PA 948 GD22581-PA 588..948 188..560 355 26.6 Plus
Dsim\GD23407-PA 684 GD23407-PA 302..684 175..560 342 26.6 Plus
Dsim\GD24059-PA 638 GD24059-PA 279..638 181..560 337 25.9 Plus
Dsim\GD10892-PA 633 GD10892-PA 327..612 254..552 294 29.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19503-PA 650 GJ19503-PA 63..650 1..560 657 33.1 Plus
Dvir\GJ12871-PA 699 GJ12871-PA 343..684 201..548 387 31.5 Plus
Dvir\GJ15205-PA 650 GJ15205-PA 331..650 223..560 245 27.9 Plus
Dvir\GJ24402-PA 670 GJ24402-PA 330..670 220..560 242 23 Plus
Dvir\GJ22936-PA 666 GJ22936-PA 291..666 181..560 236 24.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18866-PA 480 GK18866-PA 72..480 134..560 595 35.1 Plus
Dwil\GK15358-PA 952 GK15358-PA 576..952 175..560 348 25.8 Plus
Dwil\GK14758-PA 685 GK14758-PA 315..685 191..560 347 27.1 Plus
Dwil\GK18887-PA 635 GK18887-PA 256..608 179..548 330 29.4 Plus
Dwil\GK22543-PA 681 GK22543-PA 344..681 223..560 244 22.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16812-PA 600 GE16812-PA 52..600 1..560 1992 66.6 Plus
Dyak\GE18448-PA 676 GE18448-PA 305..676 175..560 395 28.2 Plus
Dyak\GE13111-PA 637 GE13111-PA 351..637 252..560 350 29.6 Plus
Dyak\GE13846-PA 688 GE13846-PA 306..688 175..560 326 26 Plus
Dyak\GE12469-PA 633 GE12469-PA 325..611 252..551 274 29.2 Plus