Clone GH24859 Report

Search the DGRC for GH24859

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:248
Well:59
Vector:pOT2
Associated Gene/TranscriptCG16719-RA
Protein status:GH24859.pep: gold
Preliminary Size:1216
Sequenced Size:1124

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16719 2001-01-01 Release 2 assignment
CG16719 2002-05-16 Blastp of sequenced clone
CG16719 2003-01-01 Sim4 clustering to Release 3
CG16719 2008-04-29 Release 5.5 accounting
CG16719 2008-08-15 Release 5.9 accounting
CG16719 2008-12-18 5.12 accounting

Clone Sequence Records

GH24859.complete Sequence

1124 bp (1124 high quality bases) assembled on 2002-05-16

GenBank Submission: AY119541

> GH24859.complete
CTAGACTTGCCAAAATAAATTTACAACAGAAATTAAAAAGCAGGTAAAAT
CCGAAAACCCCAAATCACCCCTTGCTAAGTATGGAGAACGAACAGCAGAA
TGACCTGAACCAGTGGCTAAAGGAGCAGCGCATTATCCTGGATCTGAAAG
CTCGTCGTTCATTCTCCGATGTCTTGCCGGTGGCAAAGATTGTCAAGCGC
AGTCATCCTCGTCTGGTGGATCTGCACAACTATACGCCCAAGAGCAGCGT
GGCCCTGAAACTCCAGAGCTGGCAGACCTTCAATCAGAAGGTACTGAAGA
AATTGGGCATCAATTTGACACGTTCGGAGCTGGAGCAGCTGGCGTCAGCA
GCGCCAGGAGCCATAGAATCACTGTTCCATGAACTAATCGCGGTGACCAA
GTGCGCTAGTCCCAGACCAAGACCCCGTCTGAGTGTATCGCCAACGAGCT
CCCAAAAGAGCGTGGTGATTAAAAAGTTGGCTAACAAGAATTCTGTGGTA
CGCACTCTCAACCGATCCCTCACCCAAGTGATTGAGCGCTCCTGCTCGAT
CGATAGTCAACCCCAGGTGCTGACCATGGACGTGAATGTTGTGGTCAATG
GACAGATGAAGAAGGTATCCAAGAAAGTGGTCGAGTACGAACACTATGCC
AATGCTATTAGGGAGAGTGCCGAGAAGTCACGCTACATCAATTCCATTGC
CGAGAGGGCCAATCACCTGGAGAACACAATTGCCCTCAAGAATGAACGTA
TTGATGTGCTACTCCATCAAATGGCCAAACTATCCGTGAGCATTCTATCC
ATGCCACACACCCTCAACGGGACCGATGACGACACAGAGCTTCAATCCCG
GTCTGACAACGCCGCCGAACCCTGCTATGAATTCGGCACCTTTTAGCCAA
CGGATGGATTTGTCGGTTCTCCGAGGATCCGGCGAGATTATAGCTCCTCT
TTTGATTCAAACCTGATGTTATTGGATATATTTGTACTGTATATTTTGTA
ATTTATTTTAAACCCTTAAATAAGTATTTCTTTGGCCTCACTTTAATAAA
CAAAAATTGTTACGTCGTTCAAAAGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

GH24859.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16719-RA 1078 CG16719-RA 5..1078 1..1074 5370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9677049..9678124 1..1076 5275 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9685175..9686254 1..1080 5400 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9678275..9679354 1..1080 5400 100 Plus
Blast to na_te.dros performed on 2019-03-16 23:51:15 has no hits.

GH24859.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:59 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9677049..9678124 1..1076 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:29 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 1..816 81..896 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:12 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 1..816 81..896 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:22 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 1..816 81..896 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:03 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 1..816 81..896 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:30 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 1..816 81..896 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:27:48 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 5..1078 1..1074 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:12 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 5..1078 1..1074 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:22 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 5..1080 1..1076 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:03 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 5..1078 1..1074 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:30 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
CG16719-RA 5..1080 1..1076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:59 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9685175..9686250 1..1076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:59 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9685175..9686250 1..1076 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:59 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9685175..9686250 1..1076 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:22 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9678275..9679350 1..1076 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:07 Download gff for GH24859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9678275..9679350 1..1076 100   Plus

GH24859.pep Sequence

Translation from 80 to 895

> GH24859.pep
MENEQQNDLNQWLKEQRIILDLKARRSFSDVLPVAKIVKRSHPRLVDLHN
YTPKSSVALKLQSWQTFNQKVLKKLGINLTRSELEQLASAAPGAIESLFH
ELIAVTKCASPRPRPRLSVSPTSSQKSVVIKKLANKNSVVRTLNRSLTQV
IERSCSIDSQPQVLTMDVNVVVNGQMKKVSKKVVEYEHYANAIRESAEKS
RYINSIAERANHLENTIALKNERIDVLLHQMAKLSVSILSMPHTLNGTDD
DTELQSRSDNAAEPCYEFGTF*

GH24859.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25154-PA 288 GF25154-PA 10..256 1..241 684 55.6 Plus
Dana\GF20696-PA 231 GF20696-PA 9..209 1..234 313 32.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15400-PA 254 GG15400-PA 1..251 1..251 942 70.9 Plus
Dere\GG19349-PA 252 GG19349-PA 12..208 4..233 332 36.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24770-PA 252 GH24770-PA 9..208 1..233 269 32.2 Plus
Dgri\GH24769-PA 204 GH24769-PA 17..123 5..112 234 40.7 Plus
Dgri\GH16317-PA 212 GH16317-PA 11..114 5..107 189 39.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16719-PA 271 CG16719-PA 1..271 1..271 1356 100 Plus
CG12395-PA 254 CG12395-PA 9..208 1..233 338 36.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21719-PA 254 GI21719-PA 12..209 4..234 331 36.8 Plus
Dmoj\GI24799-PA 231 GI24799-PA 8..213 1..231 284 31.6 Plus
Dmoj\GI21718-PA 384 GI21718-PA 27..132 8..114 227 39.3 Plus
Dmoj\GI13262-PA 284 GI13262-PA 10..269 4..241 205 30.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12715-PA 312 GL12715-PA 7..292 1..241 380 36 Plus
Dper\GL13136-PA 243 GL13136-PA 30..209 23..234 314 36.8 Plus
Dper\GL17959-PA 148 GL17959-PA 7..112 1..107 249 46.7 Plus
Dper\GL14829-PA 132 GL14829-PA 15..110 9..104 245 42.7 Plus
Dper\GL14832-PA 141 GL14832-PA 7..125 1..120 229 41.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14103-PA 317 GA14103-PA 7..292 1..241 376 34.9 Plus
Dpse\GA22962-PA 243 GA22962-PA 30..209 23..234 314 36.8 Plus
Dpse\GA28350-PA 157 GA28350-PA 7..112 1..107 249 46.7 Plus
Dpse\GA26261-PA 132 GA26261-PA 15..110 9..104 248 43.8 Plus
Dpse\GA26273-PA 132 GA26273-PA 7..125 1..120 232 41.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25176-PA 271 GM25176-PA 1..271 1..271 1262 87.5 Plus
Dsec\GM12982-PA 254 GM12982-PA 12..208 4..233 335 37.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14206-PA 211 GD14206-PA 1..211 61..271 954 85.3 Plus
Dsim\GD15765-PA 254 GD15765-PA 12..208 4..233 335 37.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15586-PA 254 GJ15586-PA 9..208 1..233 323 35.2 Plus
Dvir\GJ19072-PA 225 GJ19072-PA 15..220 9..235 290 33.5 Plus
Dvir\GJ12032-PA 259 GJ12032-PA 10..248 4..251 266 32.5 Plus
Dvir\GJ15326-PA 267 GJ15326-PA 10..218 4..241 264 33.6 Plus
Dvir\GJ15585-PA 336 GJ15585-PA 17..125 5..114 247 40.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15552-PA 279 GK15552-PA 10..242 4..241 483 42.5 Plus
Dwil\GK16628-PA 245 GK16628-PA 8..232 1..234 381 37.4 Plus
Dwil\GK20112-PA 247 GK20112-PA 12..208 4..233 346 35.7 Plus
Dwil\GK25770-PA 227 GK25770-PA 16..222 8..222 284 34.4 Plus
Dwil\GK20111-PA 348 GK20111-PA 14..111 5..103 245 45.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:06:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20866-PA 274 GE20866-PA 1..272 1..268 1001 73.9 Plus
Dyak\GE15995-PA 252 GE15995-PA 9..208 1..233 345 37.8 Plus

GH24859.hyp Sequence

Translation from 80 to 895

> GH24859.hyp
MENEQQNDLNQWLKEQRIILDLKARRSFSDVLPVAKIVKRSHPRLVDLHN
YTPKSSVALKLQSWQTFNQKVLKKLGINLTRSELEQLASAAPGAIESLFH
ELIAVTKCASPRPRPRLSVSPTSSQKSVVIKKLANKNSVVRTLNRSLTQV
IERSCSIDSQPQVLTMDVNVVVNGQMKKVSKKVVEYEHYANAIRESAEKS
RYINSIAERANHLENTIALKNERIDVLLHQMAKLSVSILSMPHTLNGTDD
DTELQSRSDNAAEPCYEFGTF*

GH24859.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG16719-PA 271 CG16719-PA 1..271 1..271 1356 100 Plus
CG12395-PA 254 CG12395-PA 9..208 1..233 338 36.5 Plus