Clone GH24869 Report

Search the DGRC for GH24869

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:248
Well:69
Vector:pOT2
Associated Gene/TranscriptCG2540-RA
Protein status:GH24869.pep: gold
Preliminary Size:1324
Sequenced Size:1221

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2540 2001-01-01 Release 2 assignment
CG2540 2002-05-15 Blastp of sequenced clone
CG2540 2003-01-01 Sim4 clustering to Release 3
CG2540 2008-04-29 Release 5.5 accounting
CG2540 2008-08-15 Release 5.9 accounting
CG2540 2008-12-18 5.12 accounting

Clone Sequence Records

GH24869.complete Sequence

1221 bp (1221 high quality bases) assembled on 2002-05-15

GenBank Submission: AY119542

> GH24869.complete
AGGAAATTGAAAATTTTCACAATTTTTTGGCTAACGAAGCACCGGTGATG
TTGGACTTCCTGACGGAGCTGCGAAGCAGTGGTTCTAGGGCGGATCAGCT
GCCCGGCAACATATACACCGAGTTCTTCGCGAACGTTATCGAGGAGCCCA
GGGAACATGGATGCAAGTCAGCGGATCAGGATTTTACACAAGGATTCTCC
ATGCTACGCACTTTCGATACCGAAAATAGCAATCAATTGGAGCCGCCGGC
GGCCACGGATGCGGATGTCTGGATCTTTGGCTATGGGTCGTTGGTATGGA
AGACGGACTTCCCGTACATAGACCGACGACGCGGCTTCGTTTGGGGATTC
AAGCGTCGCTTCTACCAGCACAGCATCGATCACCGGGGTATTCCCGAACG
TCCTGGTCGCGTGGTCACCCTGCTGCCAGGCGATCCCGCCCAGGATCGTG
TCTATGGCGTCGCCTATCGCATAGCTGCTAGTCAAAAGGGTGCTGTGTTG
GACCATCTGGATTACCGGGAGAAGAACGGGTATGAGCGCTGCAGCTTGGA
GTTCCACGAGTATCCGACTGACGGTGCAGAACCCATCCAAGTGATCATGT
ACGTGGCCACGCAGGCGAACGATTCCTATGCTGGTGATGTGTGGCAAGTT
CCCTGTATTGCGAGGCAAATCTTCAGCTCGGCCGGTCCCAGTGGCCCCAA
TCGCGAATACCTATTCAACCTGGCCGCCGCCATGGATCAGCTCTTTCCGG
GAGCTGTAGACGAGCATCTCGAAGAACTGGTTGCTTGCGTTAAGCGTTAC
ATTGTCGAGGATGAGCCCCAGTTAATACGCCATGCGCTGTTGCATGAGAT
TTCCGGTATTCTGGAGGAGGAACAGCTAGCGGAGCAGGCACACCAGCTGG
AGAAGCTTTTGGAGCGATGTCAGAAACCTGGCGGCCGCGAGTGGTTGATC
TACGCTGCACTGCAAGCTAAAAACAAGTCGTGACACCACAACATTTTGCA
ATAGAAGACTACTGTTTATTGTAAATACCAAGAAGCTTGGGATATTTCTT
TTTAGATGCACCATTCCAAATAGACCAATTGCAACGACGTGTTATAGAGG
CTTCTGACGAATCACAATTACGATTGTGATTTCCTGTCATGAACATTATT
ATTTATTCATTATTATATATGAAAACATATTTTAAATATAAATTTAAAAC
AAAAAAAAAAAAAAAAAAAAA

GH24869.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-RA 1210 CG2540-RA 3..1205 1..1203 6015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12520868..12522067 1..1200 5925 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12629912..12631114 1..1203 6015 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12638010..12639212 1..1203 6015 100 Plus
Blast to na_te.dros performed 2019-03-15 22:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
jockey 5020 jockey DMLINEJA 5020bp Derived from M22874 (g157823) (Rel. 47, Last updated, Version 5). 61..97 1132..1096 113 78.4 Minus

GH24869.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:06:42 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12520868..12522010 1..1143 99 <- Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:30 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 1..936 48..983 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:40 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 1..936 48..983 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:08:01 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 1..936 48..983 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:14 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 1..936 48..983 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:29 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 1..936 48..983 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:35 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 3..1202 1..1200 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:40 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 3..1202 1..1200 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:08:01 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 35..1234 1..1200 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:14 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 3..1202 1..1200 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:29 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
CG2540-RA 35..1234 1..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:42 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
X 12629912..12631111 1..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:42 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
X 12629912..12631111 1..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:42 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
X 12629912..12631111 1..1200 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:08:01 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12523945..12525144 1..1200 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:38 Download gff for GH24869.complete
Subject Subject Range Query Range Percent Splice Strand
X 12638010..12639209 1..1200 100   Plus

GH24869.hyp Sequence

Translation from 2 to 982

> GH24869.hyp
EIENFHNFLANEAPVMLDFLTELRSSGSRADQLPGNIYTEFFANVIEEPR
EHGCKSADQDFTQGFSMLRTFDTENSNQLEPPAATDADVWIFGYGSLVWK
TDFPYIDRRRGFVWGFKRRFYQHSIDHRGIPERPGRVVTLLPGDPAQDRV
YGVAYRIAASQKGAVLDHLDYREKNGYERCSLEFHEYPTDGAEPIQVIMY
VATQANDSYAGDVWQVPCIARQIFSSAGPSGPNREYLFNLAAAMDQLFPG
AVDEHLEELVACVKRYIVEDEPQLIRHALLHEISGILEEEQLAEQAHQLE
KLLERCQKPGGREWLIYAALQAKNKS*

GH24869.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-PA 311 CG2540-PA 1..311 16..326 1656 100 Plus
CG10365-PD 284 CG10365-PD 46..228 75..259 303 40.9 Plus
CG10365-PA 284 CG10365-PA 46..228 75..259 303 40.9 Plus
CG10365-PB 284 CG10365-PB 46..228 75..259 303 40.9 Plus
CG10365-PC 284 CG10365-PC 46..228 75..259 303 40.9 Plus

GH24869.pep Sequence

Translation from 47 to 982

> GH24869.pep
MLDFLTELRSSGSRADQLPGNIYTEFFANVIEEPREHGCKSADQDFTQGF
SMLRTFDTENSNQLEPPAATDADVWIFGYGSLVWKTDFPYIDRRRGFVWG
FKRRFYQHSIDHRGIPERPGRVVTLLPGDPAQDRVYGVAYRIAASQKGAV
LDHLDYREKNGYERCSLEFHEYPTDGAEPIQVIMYVATQANDSYAGDVWQ
VPCIARQIFSSAGPSGPNREYLFNLAAAMDQLFPGAVDEHLEELVACVKR
YIVEDEPQLIRHALLHEISGILEEEQLAEQAHQLEKLLERCQKPGGREWL
IYAALQAKNKS*

GH24869.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21381-PA 318 GF21381-PA 11..318 1..311 1173 70.9 Plus
Dana\GF16257-PA 289 GF16257-PA 59..233 71..244 287 41.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17732-PA 311 GG17732-PA 1..311 1..311 1547 92 Plus
Dere\GG11224-PA 284 GG11224-PA 45..224 59..240 284 39.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24132-PA 322 GH24132-PA 1..322 1..311 954 59.1 Plus
Dgri\GH17461-PA 297 GH17461-PA 66..256 70..259 306 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG2540-PA 311 CG2540-PA 1..311 1..311 1656 100 Plus
CG10365-PD 284 CG10365-PD 46..228 60..244 303 40.9 Plus
CG10365-PA 284 CG10365-PA 46..228 60..244 303 40.9 Plus
CG10365-PB 284 CG10365-PB 46..228 60..244 303 40.9 Plus
CG10365-PC 284 CG10365-PC 46..228 60..244 303 40.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16388-PA 322 GI16388-PA 24..321 20..309 984 64.8 Plus
Dmoj\GI22786-PA 291 GI22786-PA 64..229 74..238 275 40.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13138-PA 322 GL13138-PA 1..319 1..311 1009 63.3 Plus
Dper\GL13659-PA 295 GL13659-PA 64..239 70..244 303 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15390-PA 322 GA15390-PA 1..319 1..311 1009 63.3 Plus
Dpse\GA10276-PA 295 GA10276-PA 64..239 70..244 298 39.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11575-PA 311 GM11575-PA 1..311 1..311 1559 95.8 Plus
Dsec\GM26525-PA 284 GM26525-PA 46..224 60..240 289 39.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17085-PA 311 GD17085-PA 1..311 1..311 1623 96.8 Plus
Dsim\GD21033-PA 557 GD21033-PA 45..136 59..158 187 40 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16763-PA 317 GJ16763-PA 1..317 1..310 987 62.4 Plus
Dvir\GJ22788-PA 292 GJ22788-PA 61..251 70..259 304 39.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25515-PA 306 GK25515-PA 1..305 4..309 1006 63.9 Plus
Dwil\GK22400-PA 290 GK22400-PA 59..241 70..255 302 39.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17021-PA 311 GE17021-PA 1..311 1..311 1488 92 Plus
Dyak\GE10389-PA 286 GE10389-PA 55..226 70..240 293 41.3 Plus