Clone GH24918 Report

Search the DGRC for GH24918

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:249
Well:18
Vector:pOT2
Associated Gene/TranscriptCG4546-RA
Protein status:GH24918.pep: gold
Preliminary Size:1649
Sequenced Size:1817

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4546 2002-01-01 Sim4 clustering to Release 2
CG4546 2002-05-18 Blastp of sequenced clone
CG4546 2003-01-01 Sim4 clustering to Release 3
CG4546 2008-04-29 Release 5.5 accounting
CG4546 2008-08-15 Release 5.9 accounting
CG4546 2008-12-18 5.12 accounting

Clone Sequence Records

GH24918.complete Sequence

1817 bp (1817 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118820

> GH24918.complete
CGGTGTAAGTAGCCCCGTTTGATCAATACGACTCGGTGGGAGCTCAGTAG
AAGGCATCCAGTTACGCTACTGTTCAGACGAATTTCTCCTGTCGTAAATT
TGTTTTGGGAAAAAATTACATTTTCTTTTATTTTGTAAGAACGCTGTAAA
AATCTGGAAAAAAGACCCAGTGCTCTCGACCTATTTTATTTCGGTACCGC
CATCGGGAGCATTCAGTTGCGTTGCTTTTATAAATTTATGTTTACTTGAT
TCTCGGTCGGACAAACTGCAAAATGACTTCGATCGAGTCAAAACGCGTCC
AATATCGAAAGTATTTGGAACGCGCCGGAGTCATCGATGCCTTAAGCAAG
GCTCTGATTAAGCTTTACGAAGAGCAGAATAAGCCGGAGGATGCCATTCG
CTTTGTACGCAAGTTTATGTGCGAGAGCTGCCCGGACGATGCCCAGTACG
ATGTAATGAAGAACGACCTCGAGGAGGCCAAGACCCACATCTCGAAACTG
GAGCAGGAGCTTGAACGGCTACGCGGACAAATCAAAAAGTCACCGGAGGA
GTACCAGGAGCTCACTACTGAGGGCTACAAATCGCTCATGGATGATGAGG
AGAACGTGAGCTCACTGCTGCGCAAATACCTGACTCCGGAATTGCTGGAG
GAGTACATGCTGGTCACCACACCTGCGCCGGTGGATGCCTACCTATACGA
TTGCGCCGTCTCCGGATTCGAGCACCACGACGCGCCCGTGGGCATTTTCG
CGGCAGATGCTGACAGCTATGACGTGTTCAACAAACTCTTTGATCCGATC
ATAAAGGACTATCATGGCCAGATGGACAACGAGAACGATGTGCTGCAGAA
AGACCCAGACTTTGGCAACGTGGACGAGATCGAGAACTTGGATCCGGAGC
GCAAGTACATTCTGTCCGCACGAATCAGATTGGCTCGCAATATCGAAGGT
CTGCCCTTCTTCCCCAAACTGACCGAGAAGCAATTCATAGAGGTGGAGGA
GAAGGTGCGTTCGGCCACGGAGACAATGGATGGCGAGCTGATTGGCTCCT
ATCTGACAATGGCGGACATCGATGCTGAGACCCAGGCGGAGATGGTCAAG
AGACATATATTATTCCAGCGCGGCGATGAGAAGCTGACCACAGCCGGCTG
CTATCGTTTCTGGCCAACTGGTCGTGGTGTCTACCACAATCCCGCCGAGA
CCTTCTTGATCTGGGTGAATCGCCAGGACCATGTGCACATTATGTCCATG
GCACAGTGCGGCGACTTGGGCGATGTTTACAATCGCCTTGTCAACGGTCT
AACCGAACTGGAGAAGACGTTGGCCTTTGCCCGGCATCCGCGTTATGGAA
ACCTTACGGCTTGCCCCACCAATTTGGGCACCACCCTGCGGGCTTCGGTG
CACATCCGTCTGCCGCTACTCAGCAAGGACCCCGATCGTCTACTCGCCCT
CGCCGAGGAACAGCAGCTGCAGGTACGCGGCACCGATGGCGGCGAGCTGT
CCACCGTGGAAGATGGTGTCATGGACATATCAAATAAGAGGAAGCTTGGT
TTCACCGAGTTCGAACTGGTCAAAACTCTGCAGGATGGCGTTGTGACCCT
GATTAACGCAGAGGAAGAGCTCGAAATATCCGGACAGGAGGGTTAGAAAC
AAATAGCCAATACTTAAAAACCTTGTAAAGCAATTAATATCACTATAAAG
TACTCACGAACACTCACAGACGAACACTTAGAGAAACAGGAGAAACGTAT
CTTTGGTTAAATAAATTTGTCCCTAGCCACAGACAATCACTCACCTTCCA
AAAAAAAAAAAAAAAAA

GH24918.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4546-RA 1922 CG4546-RA 124..1922 1..1799 8995 100 Plus
CG4546.a 1755 CG4546.a 96..1755 140..1799 8300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11671734..11673000 533..1799 6290 99.8 Plus
chr3R 27901430 chr3R 11671072..11671352 1..281 1405 100 Plus
chr3R 27901430 chr3R 11671418..11671669 281..532 1260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15847170..15848437 533..1800 6340 100 Plus
3R 32079331 3R 15846508..15846788 1..281 1405 100 Plus
3R 32079331 3R 15846854..15847105 281..532 1260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15588001..15589268 533..1800 6340 100 Plus
3R 31820162 3R 15587339..15587619 1..281 1405 100 Plus
3R 31820162 3R 15587685..15587936 281..532 1260 100 Plus
Blast to na_te.dros performed 2019-03-15 17:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 8239..8314 89..162 122 65.8 Plus

GH24918.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:46:19 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11671072..11671352 1..281 100 -> Plus
chr3R 11671419..11671669 282..532 100 -> Plus
chr3R 11671734..11673000 533..1799 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:33 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1374 273..1646 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:53 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1374 273..1646 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:45:34 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1374 273..1646 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:38:11 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1374 273..1646 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:17 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1374 273..1646 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:21:23 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1799 1..1799 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:52 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1799 1..1799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:45:34 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1799 1..1799 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:38:11 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1799 1..1799 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:17 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
CG4546-RA 1..1773 27..1799 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:46:19 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15846508..15846788 1..281 100 -> Plus
3R 15846855..15847105 282..532 100 -> Plus
3R 15847170..15848436 533..1799 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:46:19 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15846508..15846788 1..281 100 -> Plus
3R 15846855..15847105 282..532 100 -> Plus
3R 15847170..15848436 533..1799 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:46:19 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15846508..15846788 1..281 100 -> Plus
3R 15846855..15847105 282..532 100 -> Plus
3R 15847170..15848436 533..1799 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:45:34 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11672230..11672510 1..281 100 -> Plus
arm_3R 11672577..11672827 282..532 100 -> Plus
arm_3R 11672892..11674158 533..1799 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:10:30 Download gff for GH24918.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15587339..15587619 1..281 100 -> Plus
3R 15587686..15587936 282..532 100 -> Plus
3R 15588001..15589267 533..1799 100   Plus

GH24918.pep Sequence

Translation from 272 to 1645

> GH24918.pep
MTSIESKRVQYRKYLERAGVIDALSKALIKLYEEQNKPEDAIRFVRKFMC
ESCPDDAQYDVMKNDLEEAKTHISKLEQELERLRGQIKKSPEEYQELTTE
GYKSLMDDEENVSSLLRKYLTPELLEEYMLVTTPAPVDAYLYDCAVSGFE
HHDAPVGIFAADADSYDVFNKLFDPIIKDYHGQMDNENDVLQKDPDFGNV
DEIENLDPERKYILSARIRLARNIEGLPFFPKLTEKQFIEVEEKVRSATE
TMDGELIGSYLTMADIDAETQAEMVKRHILFQRGDEKLTTAGCYRFWPTG
RGVYHNPAETFLIWVNRQDHVHIMSMAQCGDLGDVYNRLVNGLTELEKTL
AFARHPRYGNLTACPTNLGTTLRASVHIRLPLLSKDPDRLLALAEEQQLQ
VRGTDGGELSTVEDGVMDISNKRKLGFTEFELVKTLQDGVVTLINAEEEL
EISGQEG*

GH24918.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18548-PA 456 GF18548-PA 1..456 1..457 2289 92.6 Plus
Dana\GF23510-PA 568 GF23510-PA 224..568 100..450 825 46.2 Plus
Dana\GF10930-PA 388 GF10930-PA 56..385 114..447 808 45.2 Plus
Dana\GF13541-PA 469 GF13541-PA 126..448 153..456 227 24.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16959-PA 457 GG16959-PA 1..457 1..457 2402 97.8 Plus
Dere\GG15040-PA 563 GG15040-PA 219..563 100..450 830 46.5 Plus
Dere\GG14370-PA 390 GG14370-PA 32..384 89..447 811 43.5 Plus
Dere\GG22797-PA 468 GG22797-PA 125..447 153..456 227 25.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23455-PA 456 GH23455-PA 1..456 1..457 2096 84.9 Plus
Dgri\GH15902-PA 603 GH15902-PA 259..603 100..450 805 44.8 Plus
Dgri\GH15573-PA 321 GH15573-PA 9..314 141..449 701 43.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4546-PA 457 CG4546-PA 1..457 1..457 2369 100 Plus
Argk-PG 356 CG32031-PG 12..356 100..450 806 46.5 Plus
Argk-PH 356 CG32031-PH 12..356 100..450 806 46.5 Plus
Argk-PD 356 CG32031-PD 12..356 100..450 806 46.5 Plus
Argk-PE 375 CG32031-PE 31..375 100..450 806 46.5 Plus
Argk-PC 396 CG32031-PC 52..396 100..450 806 46.5 Plus
Argk-PB 432 CG32031-PB 88..432 100..450 806 46.5 Plus
Argk-PA 562 CG32031-PA 218..562 100..450 806 46.5 Plus
CG5144-PA 388 CG5144-PA 33..382 92..447 791 44.4 Plus
CG30274-PA 468 CG30274-PA 125..447 153..456 222 24.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22950-PA 456 GI22950-PA 1..456 1..457 2064 82.7 Plus
Dmoj\GI16555-PA 584 GI16555-PA 240..584 100..450 834 46.2 Plus
Dmoj\Tes114-PA 360 GI16848-PA 2..353 90..447 765 43.3 Plus
Dmoj\GI20329-PA 467 GI20329-PA 124..446 153..456 228 26.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22076-PA 456 GL22076-PA 1..456 1..457 2127 86 Plus
Dper\GL15080-PA 564 GL15080-PA 220..564 100..450 819 45.6 Plus
Dper\GL15035-PA 384 GL15035-PA 38..382 100..450 803 46.2 Plus
Dper\GL11384-PA 467 GL11384-PA 124..446 153..456 223 25.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18246-PA 456 GA18246-PA 1..456 1..457 2127 86 Plus
Dpse\GA16624-PA 564 GA16624-PA 220..564 100..450 819 45.6 Plus
Dpse\GA18688-PA 384 GA18688-PA 38..382 100..450 803 46.2 Plus
Dpse\GA15743-PA 467 GA15743-PA 124..446 153..456 223 25.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24266-PA 457 GM24266-PA 1..457 1..457 2422 98.5 Plus
Dsec\GM24893-PA 559 GM24893-PA 215..559 100..450 835 46.7 Plus
Dsec\GM25115-PA 388 GM25115-PA 33..382 92..447 832 44.9 Plus
Dsec\GM15955-PA 468 GM15955-PA 125..447 153..456 228 25.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19054-PA 457 GD19054-PA 1..457 1..457 2422 98.5 Plus
Dsim\GD14150-PA 386 GD14150-PA 31..380 92..447 829 44.9 Plus
Dsim\GD11708-PA 468 GD11708-PA 125..447 153..456 230 25.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23766-PA 456 GJ23766-PA 1..456 1..457 2125 86 Plus
Dvir\GJ12807-PA 573 GJ12807-PA 229..573 100..450 826 45.6 Plus
Dvir\GJ12598-PA 380 GJ12598-PA 21..373 89..447 767 42.1 Plus
Dvir\GJ22053-PA 467 GJ22053-PA 124..446 153..456 229 25.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11215-PA 456 GK11215-PA 1..456 1..457 2165 87.3 Plus
Dwil\GK23865-PA 570 GK23865-PA 226..570 100..450 820 45.9 Plus
Dwil\GK24279-PA 392 GK24279-PA 45..385 101..447 812 46.1 Plus
Dwil\GK19395-PA 467 GK19395-PA 124..446 153..456 221 25.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24345-PA 457 GE24345-PA 1..457 1..457 2393 97.4 Plus
Dyak\GE21263-PA 565 GE21263-PA 221..565 100..450 829 46.5 Plus
Dyak\GE20801-PA 390 GE20801-PA 43..384 100..447 810 44.3 Plus
Dyak\GE14027-PA 468 GE14027-PA 125..447 153..456 215 24.3 Plus

GH24918.hyp Sequence

Translation from 272 to 1645

> GH24918.hyp
MTSIESKRVQYRKYLERAGVIDALSKALIKLYEEQNKPEDAIRFVRKFMC
ESCPDDAQYDVMKNDLEEAKTHISKLEQELERLRGQIKKSPEEYQELTTE
GYKSLMDDEENVSSLLRKYLTPELLEEYMLVTTPAPVDAYLYDCAVSGFE
HHDAPVGIFAADADSYDVFNKLFDPIIKDYHGQMDNENDVLQKDPDFGNV
DEIENLDPERKYILSARIRLARNIEGLPFFPKLTEKQFIEVEEKVRSATE
TMDGELIGSYLTMADIDAETQAEMVKRHILFQRGDEKLTTAGCYRFWPTG
RGVYHNPAETFLIWVNRQDHVHIMSMAQCGDLGDVYNRLVNGLTELEKTL
AFARHPRYGNLTACPTNLGTTLRASVHIRLPLLSKDPDRLLALAEEQQLQ
VRGTDGGELSTVEDGVMDISNKRKLGFTEFELVKTLQDGVVTLINAEEEL
EISGQEG*

GH24918.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4546-PA 457 CG4546-PA 1..457 1..457 2369 100 Plus
Argk-PG 356 CG32031-PG 12..356 100..450 806 46.5 Plus
Argk-PH 356 CG32031-PH 12..356 100..450 806 46.5 Plus
Argk-PD 356 CG32031-PD 12..356 100..450 806 46.5 Plus
Argk-PE 375 CG32031-PE 31..375 100..450 806 46.5 Plus