Clone GH24985 Report

Search the DGRC for GH24985

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:249
Well:85
Vector:pOT2
Associated Gene/TranscriptCG3795-RA
Protein status:GH24985.pep: gold
Preliminary Size:1275
Sequenced Size:1101

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3795 2001-01-01 Release 2 assignment
CG3795 2002-05-15 Blastp of sequenced clone
CG3795 2003-01-01 Sim4 clustering to Release 3
CG3795 2008-04-29 Release 5.5 accounting
CG3795 2008-08-15 Release 5.9 accounting
CG3795 2008-12-18 5.12 accounting

Clone Sequence Records

GH24985.complete Sequence

1101 bp (1101 high quality bases) assembled on 2002-05-15

GenBank Submission: AY119543

> GH24985.complete
AAACGATTAGAAATGTGTCCGTCAAAATTTGTTGTCTACATACTGCTGAT
TTCCGTAAGCGCCAATTCGAACTCGGAATCACAGGCGGGCCAGCTGCATT
CGGCGCCCAGTCAGAGGCAGGACCGACCATCGGACTTTCAGTTCCTGGTC
ACTGGTGGCTATCGACCGGATACCAACGACCTGGTCAAGTACACGGTTTC
GCTGCGCATGGGCAAGCCGAAGAAGTTCTTCGGCGATAACCACTTTTGCG
CGGGAACGATCTTCAGCGAGCGGGCCATTCTCACGGCGGCCCATTGCATG
TTCAGCAATCGGCGAAAGCTGAAGGCCAAGAAGTTGATGGTCGTTGCCGG
GACGCCAAGGAGGCTGCTCAAGAGCAGTACAACACAGATTATTGAGGCCG
AGGAGCTATTGCCGCATCCCAAGTACAAGAAGGGCAAGTCGCAGAAGTAC
GACATAGGATTGATTCTGTTGGAGGCGGATCTCAGTCTGGGTGATGCCGT
TGCCAAAATACCTCTGTACAACAAGGTTCCGGTGGCCGGGGCCCCGTGCT
CCATCGTCGGCTGGGGCACGGTCATTCAGTTCGGACCACTGCCAGATGAG
GCCATCAACGGCGATATGCAGATCCTGCCGGACACCTTCTGCGAGAAGCT
GCTGGGCTGGTCCAACGCTGGCATGCTCTGCGCCAATGACAAGCACGACT
CCGATGTGGACAGCTGCCAGGGCGACTCGGGCGGGCCCCTCATCTGTGAC
AACATGGTGACGGGCATCGTGTCCTTCGGAATGGGTTGCGGCGAGCCTGA
TTCGGCTGGGATCTACACCGATGTCTACCACTTCCGGGATTGGATCACCG
AGAACTCCTGCCCCCTAGGCACACGGTCCGTGTGGACGCTGTTTCTGCTG
CTGCTGCTCCTGCTCACTGGGATATCCTAGCGCCCGCCTGCTCCGCGATT
CGTTCCACGGGCGGTGCTGGTCGGTTAGCCGGCTGGTACAACTAGTTAAC
CTGCCAGCCTGCAAACCTCCGAGCCTGCATACGACAAACCAAAATTGACT
AAAACCAGCGGGCATGACCTGTCATCCATGGAAAAAAAAAAAAAAAAAAA
A

GH24985.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-RA 1250 CG3795-RA 38..1119 1..1082 5410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1602818..1603322 1081..577 2525 100 Minus
chrX 22417052 chrX 1603721..1604028 308..1 1510 99.4 Minus
chrX 22417052 chrX 1603385..1603655 579..309 1340 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1708937..1709442 1082..577 2530 100 Minus
X 23542271 X 1709841..1710148 308..1 1540 100 Minus
X 23542271 X 1709505..1709775 579..309 1355 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1717035..1717540 1082..577 2530 100 Minus
X 23527363 X 1717939..1718246 308..1 1540 100 Minus
X 23527363 X 1717603..1717873 579..309 1355 100 Minus
Blast to na_te.dros performed on 2019-03-16 16:11:02 has no hits.

GH24985.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:12:10 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1602818..1603319 580..1081 100 <- Minus
chrX 1603385..1603655 309..579 99 <- Minus
chrX 1603721..1604028 1..308 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:35 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 1..918 13..930 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:41 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 1..918 13..930 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:02:36 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 1..918 13..930 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:15 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 1..918 13..930 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:21:13 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 1..918 13..930 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:37 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 16..1096 1..1081 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:41 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 16..1096 1..1081 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:02:36 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 16..1096 1..1081 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:17 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 16..1096 1..1081 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:21:13 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
CG3795-RA 35..1115 1..1081 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:10 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
X 1708938..1709439 580..1081 100 <- Minus
X 1709505..1709775 309..579 100 <- Minus
X 1709841..1710148 1..308 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:10 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
X 1708938..1709439 580..1081 100 <- Minus
X 1709505..1709775 309..579 100 <- Minus
X 1709841..1710148 1..308 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:10 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
X 1708938..1709439 580..1081 100 <- Minus
X 1709505..1709775 309..579 100 <- Minus
X 1709841..1710148 1..308 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:02:36 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1602971..1603472 580..1081 100 <- Minus
arm_X 1603538..1603808 309..579 100 <- Minus
arm_X 1603874..1604181 1..308 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:39 Download gff for GH24985.complete
Subject Subject Range Query Range Percent Splice Strand
X 1717036..1717537 580..1081 100 <- Minus
X 1717603..1717873 309..579 100 <- Minus
X 1717939..1718246 1..308 100   Minus

GH24985.hyp Sequence

Translation from 0 to 929

> GH24985.hyp
KRLEMCPSKFVVYILLISVSANSNSESQAGQLHSAPSQRQDRPSDFQFLV
TGGYRPDTNDLVKYTVSLRMGKPKKFFGDNHFCAGTIFSERAILTAAHCM
FSNRRKLKAKKLMVVAGTPRRLLKSSTTQIIEAEELLPHPKYKKGKSQKY
DIGLILLEADLSLGDAVAKIPLYNKVPVAGAPCSIVGWGTVIQFGPLPDE
AINGDMQILPDTFCEKLLGWSNAGMLCANDKHDSDVDSCQGDSGGPLICD
NMVTGIVSFGMGCGEPDSAGIYTDVYHFRDWITENSCPLGTRSVWTLFLL
LLLLLTGIS*

GH24985.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PB 305 CG3795-PB 1..305 5..309 1613 100 Plus
CG3795-PA 305 CG3795-PA 1..305 5..309 1613 100 Plus
CG18223-PA 322 CG18223-PA 57..280 61..282 364 36.7 Plus
CG14780-PA 302 CG14780-PA 42..293 60..305 342 32.5 Plus
CG13527-PA 290 CG13527-PA 36..288 57..305 336 31.5 Plus

GH24985.pep Sequence

Translation from 12 to 929

> GH24985.pep
MCPSKFVVYILLISVSANSNSESQAGQLHSAPSQRQDRPSDFQFLVTGGY
RPDTNDLVKYTVSLRMGKPKKFFGDNHFCAGTIFSERAILTAAHCMFSNR
RKLKAKKLMVVAGTPRRLLKSSTTQIIEAEELLPHPKYKKGKSQKYDIGL
ILLEADLSLGDAVAKIPLYNKVPVAGAPCSIVGWGTVIQFGPLPDEAING
DMQILPDTFCEKLLGWSNAGMLCANDKHDSDVDSCQGDSGGPLICDNMVT
GIVSFGMGCGEPDSAGIYTDVYHFRDWITENSCPLGTRSVWTLFLLLLLL
LTGIS*

GH24985.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10959-PA 320 GF10959-PA 4..307 4..301 879 52.4 Plus
Dana\GF23284-PA 705 GF23284-PA 401..671 17..291 746 49.3 Plus
Dana\GF24742-PA 310 GF24742-PA 14..287 10..284 631 46.2 Plus
Dana\GF23285-PA 329 GF23285-PA 40..283 40..282 613 46.7 Plus
Dana\GF10958-PA 153 GF10958-PA 1..132 153..284 478 62.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12685-PA 308 GG12685-PA 1..287 1..292 1229 79.8 Plus
Dere\GG13441-PA 322 GG13441-PA 51..280 51..278 396 37.9 Plus
Dere\GG12861-PA 299 GG12861-PA 44..292 56..299 336 32.4 Plus
Dere\GG19932-PA 297 GG19932-PA 3..267 7..278 335 30.1 Plus
Dere\GG22790-PA 270 GG22790-PA 5..236 53..282 325 32.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24443-PA 308 GH24443-PA 1..283 1..281 778 52.3 Plus
Dgri\GH24502-PA 283 GH24502-PA 28..276 59..304 341 32.9 Plus
Dgri\GH20227-PA 306 GH20227-PA 29..298 38..305 334 31.4 Plus
Dgri\GH22868-PA 268 GH22868-PA 33..261 46..278 328 36 Plus
Dgri\GH19781-PA 275 GH19781-PA 22..249 54..280 326 33.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3795-PB 305 CG3795-PB 1..305 1..305 1613 100 Plus
CG3795-PA 305 CG3795-PA 1..305 1..305 1613 100 Plus
CG18223-PA 322 CG18223-PA 57..280 57..278 364 36.7 Plus
CG14780-PA 302 CG14780-PA 42..293 56..301 342 32.5 Plus
CG13527-PA 290 CG13527-PA 36..288 53..301 336 31.5 Plus
CG13527-PB 292 CG13527-PB 36..288 53..301 336 31.5 Plus
CG4477-PB 315 CG4477-PB 38..275 45..280 316 32.5 Plus
CG15873-PA 297 CG15873-PA 32..294 42..301 315 30.1 Plus
lambdaTry-PA 272 CG12350-PA 58..258 76..280 311 33 Plus
CG6041-PA 308 CG6041-PA 15..276 26..285 311 29.4 Plus
CG32755-PA 315 CG32755-PA 8..278 11..285 305 32.2 Plus
epsilonTry-PA 256 CG18681-PA 31..249 46..278 301 33.6 Plus
zetaTry-PA 280 CG12387-PA 39..273 46..278 291 32.1 Plus
CG31681-PA 264 CG31681-PA 52..249 77..278 286 37.6 Plus
etaTry-PA 262 CG12386-PA 40..256 59..280 284 31.4 Plus
teq-PD 1450 CG4821-PD 1232..1441 76..280 276 32.1 Plus
teq-PF 2379 CG4821-PF 2161..2370 76..280 276 32.1 Plus
teq-PG 2792 CG4821-PG 2574..2783 76..280 276 32.1 Plus
CG6048-PA 362 CG6048-PA 72..287 72..281 272 29.4 Plus
CG17239-PB 248 CG17239-PB 49..237 79..278 271 31.8 Plus
CG17239-PA 248 CG17239-PA 49..237 79..278 271 31.8 Plus
CG8299-PA 260 CG8299-PA 28..256 46..282 271 31.7 Plus
betaTry-PB 253 CG18211-PB 53..253 76..282 266 32.5 Plus
betaTry-PA 253 CG18211-PA 53..253 76..282 266 32.5 Plus
Ser8-PA 260 CG4812-PA 57..255 76..280 266 30.6 Plus
kappaTry-PC 263 CG12388-PC 39..263 60..288 265 30.6 Plus
CG7829-PA 253 CG7829-PA 28..247 46..280 260 31.8 Plus
CG34458-PA 257 CG34458-PA 55..255 77..282 254 33.6 Plus
CG1304-PA 260 CG1304-PA 21..257 28..282 249 29.7 Plus
thetaTry-PA 262 CG12385-PA 6..259 10..282 248 27.3 Plus
CG17571-PB 258 CG17571-PB 54..255 76..282 247 31.5 Plus
CG17571-PA 258 CG17571-PA 54..255 76..282 247 31.5 Plus
CG11836-PF 223 CG11836-PF 12..220 79..283 246 33.2 Plus
CG11836-PE 223 CG11836-PE 12..220 79..283 246 33.2 Plus
CG11836-PG 223 CG11836-PG 12..220 79..283 246 33.2 Plus
CG11836-PC 223 CG11836-PC 12..220 79..283 246 33.2 Plus
CG11836-PA 223 CG11836-PA 12..220 79..283 246 33.2 Plus
CG11836-PB 223 CG11836-PB 12..220 79..283 246 33.2 Plus
CG11836-PI 281 CG11836-PI 70..278 79..283 246 33.2 Plus
CG11836-PJ 333 CG11836-PJ 122..330 79..283 246 33.2 Plus
gammaTry-PA 253 CG30028-PA 53..253 76..282 245 31 Plus
CG30025-PA 253 CG30025-PA 53..253 76..282 245 31 Plus
deltaTry-PA 253 CG12351-PA 53..253 76..282 245 31 Plus
CG30031-PA 253 CG30031-PA 53..253 76..282 245 31 Plus
CG31954-PA 277 CG31954-PA 51..275 46..282 245 28.8 Plus
CG18735-PA 364 CG18735-PA 102..315 72..282 243 31.6 Plus
CG4271-PA 242 CG4271-PA 42..235 77..282 241 34.1 Plus
alphaTry-PA 256 CG18444-PA 53..253 76..282 239 31.1 Plus
Ser12-PA 245 CG17240-PA 43..238 73..278 238 29.1 Plus
CG32271-PA 248 CG32271-PA 25..242 46..278 237 30 Plus
Ser6-PA 259 CG2071-PA 22..257 36..282 236 29.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16031-PA 363 GI16031-PA 96..337 40..281 689 50 Plus
Dmoj\GI20322-PA 292 GI20322-PA 37..267 50..278 349 32.9 Plus
Dmoj\GI16045-PA 254 GI16045-PA 2..225 62..282 337 34.4 Plus
Dmoj\GI19398-PA 299 GI19398-PA 29..296 38..304 315 31.3 Plus
Dmoj\GI12048-PA 308 GI12048-PA 58..279 59..278 314 31.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14363-PA 313 GL14363-PA 43..284 40..282 755 56.6 Plus
Dper\GL20437-PA 303 GL20437-PA 4..279 7..289 356 32.2 Plus
Dper\GL11375-PA 277 GL11375-PA 23..274 50..300 343 32.8 Plus
Dper\GL22039-PA 295 GL22039-PA 41..266 54..278 342 33.3 Plus
Dper\GL14259-PA 285 GL14259-PA 47..272 59..282 329 33.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22993-PA 313 GA22993-PA 43..284 40..282 754 56.6 Plus
Dpse\GA25114-PA 307 GA25114-PA 3..279 6..289 356 32.1 Plus
Dpse\GA14844-PA 295 GA14844-PA 41..289 54..301 344 31.5 Plus
Dpse\GA24700-PA 277 GA24700-PA 23..274 50..300 337 32.8 Plus
Dpse\GA11598-PA 262 GA11598-PA 23..256 41..280 334 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18957-PA 239 GM18957-PA 1..238 1..244 829 71 Plus
Dsec\GM14910-PA 322 GM14910-PA 57..281 57..279 373 37 Plus
Dsec\GM15948-PA 281 GM15948-PA 8..274 34..301 352 32.2 Plus
Dsec\GM11835-PA 297 GM11835-PA 32..297 42..304 329 32 Plus
Dsec\GM25124-PA 315 GM25124-PA 33..275 34..280 319 32.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11702-PA 281 GD11702-PA 7..274 33..301 346 31.8 Plus
Dsim\GD24955-PA 297 GD24955-PA 32..297 42..304 328 32 Plus
Dsim\GD14161-PA 316 GD14161-PA 34..276 34..280 319 32.3 Plus
Dsim\GD16771-PA 391 GD16771-PA 12..301 26..304 310 29.6 Plus
Dsim\GD10792-PA 272 GD10792-PA 58..258 76..280 303 32.5 Plus
Dsim\GD16771-PA 391 GD16771-PA 301..354 232..285 175 53.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15542-PA 304 GJ15542-PA 38..295 41..302 780 56.2 Plus
Dvir\GJ12380-PA 302 GJ12380-PA 38..296 41..301 698 49.6 Plus
Dvir\GJ12446-PA 337 GJ12446-PA 71..332 41..304 664 47.9 Plus
Dvir\GJ14754-PA 299 GJ14754-PA 28..265 43..280 392 34.9 Plus
Dvir\GJ22047-PA 292 GJ22047-PA 43..270 55..280 353 33.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25304-PA 337 GK25304-PA 54..324 34..301 635 45.6 Plus
Dwil\GK11985-PA 283 GK11985-PA 18..267 41..291 563 44.1 Plus
Dwil\GK14165-PA 319 GK14165-PA 32..275 41..289 507 39.4 Plus
Dwil\GK11113-PA 248 GK11113-PA 2..231 62..290 472 42.1 Plus
Dwil\GK15442-PA 319 GK15442-PA 70..296 34..289 464 36.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16515-PA 311 GE16515-PA 1..293 1..292 1200 74.5 Plus
Dyak\GE22539-PA 322 GE22539-PA 57..280 57..278 374 37.2 Plus
Dyak\GE14020-PA 285 GE14020-PA 22..269 53..299 357 32.5 Plus
Dyak\GE16691-PA 299 GE16691-PA 44..292 56..299 337 32.4 Plus
Dyak\GE20812-PA 318 GE20812-PA 50..276 56..280 333 32.2 Plus