Clone GH25024 Report

Search the DGRC for GH25024

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:250
Well:24
Vector:pOT2
Associated Gene/TranscriptCG10222-RA
Protein status:GH25024.pep: gold
Sequenced Size:1107

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10222 2003-01-01 Sim4 clustering to Release 3
CG10222 2008-04-29 Release 5.5 accounting
CG10222 2008-08-15 Release 5.9 accounting
CG10222 2008-12-18 5.12 accounting

Clone Sequence Records

GH25024.complete Sequence

1107 bp (1107 high quality bases) assembled on 2005-05-23

GenBank Submission: BT023711

> GH25024.complete
AATGATGCAAAGATTTCCGACGCAGGCGACCGTGGAGAATCCACGTTATG
GACAGCTAATCATAGGACCTCCTGGTTCTGGGAAAACCACCTATTGCGGT
GAGGCCCTTAAGTTCTATCGCGAACTGGGCCGTCAGGTGGGCGTTGTGAA
TCTGGATCCAGCCAACGAAAACATGTCCTACGAACCGGTGCTAAGTGTGA
TGGAGCTAATCACTGTGGAGGATTGCATGGAGCACCTGAAGCTGGGACCA
AACGGAGCTCTAATGCACTGCGCTGAGTATCTGGCCGACCATTTGGAGGA
TTGGCTGTTGCCGGCACTGCGCAAACTAAGCGCCACTTACAACTACTTCC
TGTTCGACTGTCCCGGCCAAGTTGAGCTATATACCCATCACAACGCTATG
GCCCGGATTTTCGAGCGTTTGGAGCGTGAAAGATATAGCCTGGTCACCGT
TAACCTTATAGATTCCCATTACTGCTCGGAGCCTGCCAAATTCATTGCCA
CTTTGCTGATGGCATTGAACACCATGTTGCGGATGAGTCTACCCCACGTT
AATGTGCTTTCCAAGGCCGATCTGCTAAAGAAGCACGAGACCAAGTTACA
CTTTAACGTGGACTATTATACGGACGTCCTGGACCTCAAGTATCTGCTGG
ACAAACTGGACGATGATCCCGCCATGCGCAAGTATCGAAAACTGAATGCA
GCCATCTGCTCCATGGTGGAGGACTACGCTCTCGTTTCGTTCCAACTGCT
GGACGTCTTCAGCACGGACAGCATGCTCCGCTTGCGCAATCACATCGACA
AGGCTAATGGATACGTCTACAAGGCAGGTGAGGAGCAGACGGTCAACTCA
CTACTAGCCTGCGCCGTGGGTGCAGAAACTGAGGCCGCTCGCATGGAGCA
TGATGTCCAACCCTATATGGAATAAAAGAACTGAAACTAATCGAAAATAG
CCTGTGATATTGTGCATTGTATTTCGAAAATAAGTTATACAAGTCGAGAG
TGAGGGATTAAGGTACGGAATGAAAAGCAGTGATTTTTTGGATTTATTAA
AATATTATCTCGGCTTGAACTCTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

GH25024.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-RA 1074 CG10222-RA 1..1074 1..1074 5370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 13401598..13402671 1074..1 5370 100 Minus
chr3L 24539361 chr3L 13398429..13398547 1074..956 535 96.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:06:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13411377..13412453 1077..1 5385 100 Minus
3L 28110227 3L 13408209..13408329 1077..956 500 95.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 13404477..13405553 1077..1 5385 100 Minus
3L 28103327 3L 13401309..13401429 1077..956 510 95.9 Minus
Blast to na_te.dros performed on 2019-03-16 03:44:30 has no hits.

GH25024.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:45:11 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 13401598..13402671 1..1074 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:39 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..924 2..925 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:01:37 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..924 2..925 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:03:26 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..924 2..925 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:42:06 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..924 2..925 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:14:01 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..924 2..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:45:25 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..925 1..925 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:01:37 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..1074 1..1074 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:03:26 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..1074 1..1074 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:42:06 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..925 1..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:14:01 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
CG10222-RA 1..1074 1..1074 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:11 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13411380..13412453 1..1074 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:11 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13411380..13412453 1..1074 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:45:11 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13411380..13412453 1..1074 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:03:26 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13404480..13405553 1..1074 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:21:09 Download gff for GH25024.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13404480..13405553 1..1074 100   Minus

GH25024.hyp Sequence

Translation from 0 to 924

> GH25024.hyp
MMQRFPTQATVENPRYGQLIIGPPGSGKTTYCGEALKFYRELGRQVGVVN
LDPANENMSYEPVLSVMELITVEDCMEHLKLGPNGALMHCAEYLADHLED
WLLPALRKLSATYNYFLFDCPGQVELYTHHNAMARIFERLERERYSLVTV
NLIDSHYCSEPAKFIATLLMALNTMLRMSLPHVNVLSKADLLKKHETKLH
FNVDYYTDVLDLKYLLDKLDDDPAMRKYRKLNAAICSMVEDYALVSFQLL
DVFSTDSMLRLRNHIDKANGYVYKAGEEQTVNSLLACAVGAETEAARMEH
DVQPYME*

GH25024.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PB 307 CG10222-PB 1..307 1..307 1610 100 Plus
CG10222-PA 307 CG10222-PA 1..307 1..307 1610 100 Plus
CG2656-PA 283 CG2656-PA 2..270 15..282 399 36.7 Plus
CG3704-PA 382 CG3704-PA 27..209 19..208 173 25.3 Plus

GH25024.pep Sequence

Translation from 1 to 924

> GH25024.pep
MMQRFPTQATVENPRYGQLIIGPPGSGKTTYCGEALKFYRELGRQVGVVN
LDPANENMSYEPVLSVMELITVEDCMEHLKLGPNGALMHCAEYLADHLED
WLLPALRKLSATYNYFLFDCPGQVELYTHHNAMARIFERLERERYSLVTV
NLIDSHYCSEPAKFIATLLMALNTMLRMSLPHVNVLSKADLLKKHETKLH
FNVDYYTDVLDLKYLLDKLDDDPAMRKYRKLNAAICSMVEDYALVSFQLL
DVFSTDSMLRLRNHIDKANGYVYKAGEEQTVNSLLACAVGAETEAARMEH
DVQPYME*

GH25024.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 15:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10956-PA 307 GF10956-PA 1..307 1..307 1497 88.3 Plus
Dana\GF17656-PA 284 GF17656-PA 2..269 15..281 418 38.4 Plus
Dana\GF22048-PA 380 GF22048-PA 27..209 19..208 173 25.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 15:02:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13773-PA 307 GG13773-PA 1..307 1..307 1610 97.1 Plus
Dere\GG13875-PA 283 GG13875-PA 2..270 15..282 406 36.8 Plus
Dere\GG12730-PA 379 GG12730-PA 27..197 19..191 183 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 15:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14681-PA 310 GH14681-PA 1..305 1..307 1466 87.6 Plus
Dgri\GH19007-PA 287 GH19007-PA 2..270 15..282 407 37.4 Plus
Dgri\GH19561-PA 385 GH19561-PA 31..201 19..191 170 24.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10222-PB 307 CG10222-PB 1..307 1..307 1610 100 Plus
CG10222-PA 307 CG10222-PA 1..307 1..307 1610 100 Plus
CG2656-PA 283 CG2656-PA 2..270 15..282 399 36.7 Plus
CG3704-PA 382 CG3704-PA 27..209 19..208 173 25.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 15:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13090-PA 307 GI13090-PA 1..303 1..305 1461 87.5 Plus
Dmoj\GI23062-PA 289 GI23062-PA 2..269 15..281 412 36.8 Plus
Dmoj\GI14999-PA 391 GI14999-PA 38..208 19..191 175 26 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 15:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25436-PA 175 GL25436-PA 1..175 133..307 856 90.9 Plus
Dper\GL25435-PA 102 GL25435-PA 1..102 1..102 497 86.3 Plus
Dper\GL12423-PA 286 GL12423-PA 2..270 15..282 412 37.1 Plus
Dper\GL18533-PA 388 GL18533-PA 34..204 19..191 174 25.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 15:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28617-PA 307 GA28617-PA 1..307 1..307 1528 90.6 Plus
Dpse\GA15412-PA 286 GA15412-PA 2..270 15..282 412 37.1 Plus
Dpse\GA25677-PA 388 GA25677-PA 34..204 19..191 174 25.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 15:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24597-PA 307 GM24597-PA 1..307 1..307 1623 97.7 Plus
Dsec\GM10937-PA 283 GM10937-PA 2..270 15..282 410 36.8 Plus
Dsec\GM19010-PA 382 GM19010-PA 27..209 19..208 183 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 15:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12666-PA 266 GD12666-PA 1..266 1..307 1271 84 Plus
Dsim\GD19916-PA 283 GD19916-PA 2..270 15..282 406 36.8 Plus
Dsim\GD16449-PA 375 GD16449-PA 27..209 19..208 183 25.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 15:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13838-PA 307 GJ13838-PA 1..305 1..307 1461 86.6 Plus
Dvir\GJ24575-PA 201 GJ24575-PA 2..184 15..189 346 39.1 Plus
Dvir\GJ15357-PA 399 GJ15357-PA 45..215 19..191 176 26 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 15:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17097-PA 307 GK17097-PA 1..307 1..307 1442 89.9 Plus
Dwil\GK14522-PA 284 GK14522-PA 2..270 15..282 415 37.9 Plus
Dwil\GK10172-PA 389 GK10172-PA 33..204 19..191 185 25.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 15:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20068-PA 307 GE20068-PA 1..307 1..307 1606 96.4 Plus
Dyak\GE24908-PA 283 GE24908-PA 2..270 15..282 410 37.1 Plus
Dyak\GE16556-PA 380 GE16556-PA 27..209 19..208 180 25.3 Plus