Clone GH25257 Report

Search the DGRC for GH25257

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:252
Well:57
Vector:pOT2
Associated Gene/TranscriptCG6470-RA
Protein status:GH25257.pep: gold
Preliminary Size:1481
Sequenced Size:1430

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6470 2001-01-01 Release 2 assignment
CG6470 2001-07-04 Blastp of sequenced clone
CG6470 2003-01-01 Sim4 clustering to Release 3
CG6470 2008-04-29 Release 5.5 accounting
CG6470 2008-08-15 Release 5.9 accounting
CG6470 2008-12-18 5.12 accounting

Clone Sequence Records

GH25257.complete Sequence

1430 bp (1430 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051609

> GH25257.complete
CTACACATACACAAACACACACGCACACCACACACGAGATGAACAAGCCG
CAAAAGCCCATCAAGGTGAAGCGCGCCAAGCGGACCGGATGCTCCAGGAT
TCAGCCGCAGGAATTCGTGGAGGCTCAGGTGGAGAACGCGCGCAGGGCGG
TGGAGCGCAAGCTGATCTACCTGTCCGAGTCGAACAGAGCCAGTGCATCC
ACTCGGGCGGCCAAGCGAAGCACGGCTGGCGCAGGCGGAGGAGCAGGGCG
GGAAGGATCGAGCATGGCTGGCCATGCCCATGGTGAGCGTCGCAGGCGCA
GCAAGAGGAGTCTGCTACACGCTCCAGCTCAGGAAGAGACCGACGAGGAG
GAGAGTTCGCCGCTGGAGAAGACGAACAACTACGATAACAGAAGACGCAG
CAGTTGCAATCTATTGCTATCTCCTCGTCGCAATGGCCTCACGCCCCGGA
ACTACGAGGCCGAGGCCGAGGCAGCGGAAATGGAAGCCATTATGGCCGCA
CAGCAAGCCTCCAACGGAACGACGAAGCCCGATCATGATGAAGGAGATGG
CGGGGAGTATCAGGGCGGACCGTTTGGCCGACTGCAGCTGAAGCCGCTGG
GCAGCTATGCCACGGACCAGCAGCTGCCCAGCTACTCGTGCGGCGTGTGC
GGTGCCAAGTTTCACATCCGATCGCTGCTGGGCGCCCACCGGCACACCCA
CGACGATGACTTCAAGGTGCGCTTCCGTGCACGGCGACCGCGGGAGAGCA
GAACCACCCTGACCACCGTCCATTTGTGCAAGTACTGCGATCGCTCCTTC
GACCTGGAACGCACGCTGCACATCCATCTGCTGAGCTACTGCAAGAAGAT
ACCGCCGCAGCAGCGCCGCAAGCTGGCCTTCACGGAACTGGCGCACGAGA
AGAAGGCGCCGTTGCCCAACTTTCAGCGGGCGCAGCAGCCGGTTCACCAC
CAGGGAAACAGTGCCACCAACCAGCAGGATCAGATGACCCAGCAGGAAAA
ACTTCAGAAGATTATCATGCGCGAGTCGGCAGTGCACGAGCGCTGGCGCT
AGTCGTCCTCATTACCAATCTTCACCAGAAACTGGATGCAGAACCAACGC
TTGCTTCCAAACACCAGAAGAATCCATTGAAACGAAAGGAAAATTGTCAA
GTGCAGGGCGTATGCAGCTCAACTGTATTTGATTTGTTTACCAGGATCAT
CAAAATTTGTGGAATTGAAGGCAAAATTATTAGAAGTATGAATTGAGCAC
AATGACACGATTAGTGGGAGACTCACCTGTTCTGAAGACCGAAACACACA
CTGGCGTTGAATAGTCACATTCCACAAACGACGGTCAATTAAAACTAAAT
TAAGAGTCCCCAGCACGTTGATGCAAATGTATTGAATATAATTAAATATT
TGAACTAAACAGAAAAAAAAAAAAAAAAAA

GH25257.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RA 1660 CG6470-RA 240..1653 1..1414 7070 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18401961..18402955 1412..412 4760 98.6 Minus
chrX 22417052 chrX 18403463..18403873 411..1 2040 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18512827..18513829 1414..412 5015 100 Minus
X 23542271 X 18514337..18514747 411..1 2055 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18520925..18521927 1414..412 5015 100 Minus
X 23527363 X 18522435..18522845 411..1 2055 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:14:26 has no hits.

GH25257.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:15:33 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18401961..18402955 412..1412 98 <- Minus
chrX 18403463..18403873 1..411 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:50 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 1..1014 39..1052 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:46 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 1..1014 39..1052 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:58:12 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 1..1014 39..1052 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:34 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 1..1014 39..1052 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:13 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 1..1014 39..1052 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:21:34 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 64..1475 1..1412 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:46 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 64..1475 1..1412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:12 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 64..1475 1..1412 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:56:35 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 64..1475 1..1412 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:13 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 64..1475 1..1412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:33 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
X 18512829..18513829 412..1412 100 <- Minus
X 18514337..18514747 1..411 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:33 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
X 18512829..18513829 412..1412 100 <- Minus
X 18514337..18514747 1..411 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:15:33 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
X 18512829..18513829 412..1412 100 <- Minus
X 18514337..18514747 1..411 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:12 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18406862..18407862 412..1412 100 <- Minus
arm_X 18408370..18408780 1..411 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:34:19 Download gff for GH25257.complete
Subject Subject Range Query Range Percent Splice Strand
X 18520927..18521927 412..1412 100 <- Minus
X 18522435..18522845 1..411 100   Minus

GH25257.hyp Sequence

Translation from 2 to 1051

> GH25257.hyp
THTQTHTHTTHEMNKPQKPIKVKRAKRTGCSRIQPQEFVEAQVENARRAV
ERKLIYLSESNRASASTRAAKRSTAGAGGGAGREGSSMAGHAHGERRRRS
KRSLLHAPAQEETDEEESSPLEKTNNYDNRRRSSCNLLLSPRRNGLTPRN
YEAEAEAAEMEAIMAAQQASNGTTKPDHDEGDGGEYQGGPFGRLQLKPLG
SYATDQQLPSYSCGVCGAKFHIRSLLGAHRHTHDDDFKVRFRARRPRESR
TTLTTVHLCKYCDRSFDLERTLHIHLLSYCKKIPPQQRRKLAFTELAHEK
KAPLPNFQRAQQPVHHQGNSATNQQDQMTQQEKLQKIIMRESAVHERWR*

GH25257.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PB 337 CG6470-PB 1..337 13..349 1768 100 Plus
CG6470-PA 337 CG6470-PA 1..337 13..349 1768 100 Plus
CG8478-PE 571 CG8478-PE 204..467 22..305 228 25.9 Plus
CG8478-PB 571 CG8478-PB 204..467 22..305 228 25.9 Plus
CG8478-PC 572 CG8478-PC 205..468 22..305 228 25.9 Plus

GH25257.pep Sequence

Translation from 38 to 1051

> GH25257.pep
MNKPQKPIKVKRAKRTGCSRIQPQEFVEAQVENARRAVERKLIYLSESNR
ASASTRAAKRSTAGAGGGAGREGSSMAGHAHGERRRRSKRSLLHAPAQEE
TDEEESSPLEKTNNYDNRRRSSCNLLLSPRRNGLTPRNYEAEAEAAEMEA
IMAAQQASNGTTKPDHDEGDGGEYQGGPFGRLQLKPLGSYATDQQLPSYS
CGVCGAKFHIRSLLGAHRHTHDDDFKVRFRARRPRESRTTLTTVHLCKYC
DRSFDLERTLHIHLLSYCKKIPPQQRRKLAFTELAHEKKAPLPNFQRAQQ
PVHHQGNSATNQQDQMTQQEKLQKIIMRESAVHERWR*

GH25257.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22408-PA 385 GF22408-PA 45..385 27..337 621 47.6 Plus
Dana\GF23037-PA 564 GF23037-PA 360..461 199..295 235 45.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18110-PA 342 GG18110-PA 1..342 1..337 1133 73 Plus
Dere\GG17114-PA 568 GG17114-PA 369..492 199..322 226 39.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12334-PA 344 GH12334-PA 13..279 19..296 378 38.2 Plus
Dgri\GH23582-PA 332 GH23582-PA 7..267 27..296 370 39.1 Plus
Dgri\GH17408-PA 578 GH17408-PA 387..473 199..296 224 43.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PB 337 CG6470-PB 1..337 1..337 1768 100 Plus
CG6470-PA 337 CG6470-PA 1..337 1..337 1768 100 Plus
CG8478-PE 571 CG8478-PE 204..467 10..293 228 25.9 Plus
CG8478-PB 571 CG8478-PB 204..467 10..293 228 25.9 Plus
CG8478-PC 572 CG8478-PC 205..468 10..293 228 25.9 Plus
CG8478-PD 576 CG8478-PD 209..472 10..293 228 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15584-PA 304 GI15584-PA 1..304 21..337 469 38.2 Plus
Dmoj\GI22738-PA 610 GI22738-PA 425..510 199..295 209 43.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24303-PA 564 GL24303-PA 364..461 199..295 208 43.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19619-PA 281 GA19619-PA 42..276 25..292 516 45.4 Plus
Dpse\GA21104-PA 564 GA21104-PA 364..461 199..295 207 43.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:13:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22802-PA 331 GM22802-PA 1..331 1..337 1409 85.2 Plus
Dsec\GM23836-PA 179 GM23836-PA 29..103 247..322 189 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15627-PA 123 GD15627-PA 1..123 1..127 471 84.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15188-PA 325 GJ15188-PA 14..272 20..303 473 41.7 Plus
Dvir\GJ22740-PA 540 GJ22740-PA 350..463 199..325 217 40.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:13:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16023-PA 352 GK16023-PA 10..297 27..297 505 42.4 Plus
Dwil\GK11963-PA 518 GK11963-PA 375..430 245..300 197 60.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15516-PA 346 GE15516-PA 1..346 1..337 983 72.5 Plus
Dyak\GE25984-PA 153 GE25984-PA 1..49 247..295 187 65.3 Plus