Clone GH25289 Report

Search the DGRC for GH25289

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:252
Well:89
Vector:pOT2
Associated Gene/TranscriptCG31221-RA
Protein status:GH25289.pep: gold
Sequenced Size:1400

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31221 2002-11-11 Blastp of sequenced clone
CG31221 2003-01-01 Sim4 clustering to Release 3
CG31221 2008-04-29 Release 5.5 accounting
CG31221 2008-08-15 Release 5.9 accounting
CG31221 2008-12-18 5.12 accounting

Clone Sequence Records

GH25289.complete Sequence

1400 bp (1400 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001440

> GH25289.complete
AAAGCTTGCATGTAGTCCCCAAAACCAAGTAGTAAACGATAAGGAAACTA
TATAGAACCGATCGATATAGAAATATAGAATCGGGAAGAAGTTGCAGCTA
ATTTCTGGTTCGTATAACTCCATTAGAAGGCGATTAGCATATTGAAGGAC
GAGCGGAGTAAGCGGCGGGAAACCCGCTGCAGTGGCTGAAGTGCCAACGA
TAATTCAATCAAAGGGCTGGAAAAAGTTGCCCGGAAAACTGCTTCTGAGC
GAAGTAGGGAAGGAAACTACAAAACTCCATCAAAACACTCGGATAAAGTG
GAAAACGTGTGCGTGCGCGTGTGAAAAACTTTTATCATCAGGCCGAGGGT
CTTAATTTCCACACTTTATAAGTTCCGCCAGCCAGCGGTATATGTCCTTC
CTGGCAATGGACCACCACCATCATCATCATCATCAGCAGCCGCGTCAGCA
CCACCTCAGCATGTGGCCATCATTCGCCGTCTGTCTGCTCCTCCTGCAGA
CCACCACGACCACCATGGCCATCGATTTGAGTCGTTTGTACGGGCACATG
GCCAATCCCATCGTGAAGCGGAGCGAAGCCTGTCATCCGTATGAGCCCTT
CAAGTGTCCCGGGGATGGTAATTGCATTTCCATCCAATATTTATGCGATG
GTGCACCCGATTGCTCTGACGGATACGATGAGGATATGCGTCTATGTACG
GCTGCCAAGCGGCCGCCGGTCGAGGAGACCGCATCCTTCCTCCAGAGCCT
GATCGCCTCCCACGGACCCAATTACCTGGAAAAACTTTTCGGCAGCAAGG
CACGTGATGCCCTTTCACCTCTCGGCGGAGTCGAGAAGGTCGCCATCGCG
TTGAGTGAGTCGCAAACGATTGAGGATTTTGGAGCTGCCCTTCATCTAAT
GAGATCGGACCTGGAACACTTGCGCTCGGTTTTCATGGCGGTGGAGAACG
GGGATCTGGGCATGCTGAAGTCGCTGGGCATCAAGGACTCGGAGCTGGGC
GATGTGAAGTTCTTCTTGGAGAAGCTGGTCAACACCGGCTTCCTCGACTG
AGTAGCGCCAGATCCGGCTTCTGGATTTTATTACGCACACGCACAGCCCA
TCAATCCTAATTTCTATTCGTATTTGGGCACGCCCTATGATAATTACAAT
TATTAAATGCGAATTACACCGGAACACACGTACCTACAATCATCGTCCCC
AAACAAAACGTACCCATGAATGCCCCTCCATTTCAGCCAAAAGATATTTT
CTCAAACTCTATTTTTGAGTATGATTTTGCTTTCCAAGAACCTTCTTATA
CGAGTTTTTTGGTTTAATTATTTTCATTTTCCAAACACTTTTATATAAAA
AAAAAAAAACAAAAATCAAGCAACCAAAAACTAAAAAAAAAAAAAAAAAA

GH25289.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221.d 1931 CG31221.d 257..1645 1..1390 6910 99.9 Plus
CG31221-RA 4353 CG31221-RA 257..1645 1..1390 6910 99.9 Plus
CG31221.c 3030 CG31221.c 257..1645 1..1390 6910 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 15239710..15240284 1..575 2875 100 Plus
chr3R 27901430 chr3R 15280992..15281471 902..1382 2355 99.8 Plus
chr3R 27901430 chr3R 15277942..15278141 704..903 985 99.5 Plus
chr3R 27901430 chr3R 15264576..15264705 575..704 650 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19415814..19416388 1..575 2875 100 Plus
3R 32079331 3R 19457118..19457605 902..1390 2395 99.8 Plus
3R 32079331 3R 19454066..19454265 704..903 1000 100 Plus
3R 32079331 3R 19440702..19440831 575..704 650 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 19156645..19157219 1..575 2875 100 Plus
3R 31820162 3R 19197949..19198436 902..1390 2405 99.7 Plus
3R 31820162 3R 19194897..19195096 704..903 1000 100 Plus
3R 31820162 3R 19181533..19181662 575..704 650 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:16:25 has no hits.

GH25289.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:17:24 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 15239710..15240119 1..410 100 == Plus
chr3R 15240172..15240284 463..575 100 -> Plus
chr3R 15264577..15264705 576..704 100 -> Plus
chr3R 15277943..15278141 705..903 99 -> Plus
chr3R 15280994..15281471 904..1382 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:37:14 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 1..660 392..1051 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:05:54 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 1..660 392..1051 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:13:33 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RC 1..765 392..1156 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:48 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 1..660 392..1051 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:16:36 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RC 1..765 392..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:37:13 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 248..1628 1..1382 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:05:54 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 248..1628 1..1382 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:13:33 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 258..1638 1..1382 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:48 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RB 248..1628 1..1382 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:16:36 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
CG31221-RA 258..1638 1..1382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:24 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19415814..19416388 1..575 100 -> Plus
3R 19440703..19440831 576..704 100 -> Plus
3R 19454067..19454265 705..903 100 -> Plus
3R 19457120..19457597 904..1382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:24 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19415814..19416388 1..575 100 -> Plus
3R 19440703..19440831 576..704 100 -> Plus
3R 19454067..19454265 705..903 100 -> Plus
3R 19457120..19457597 904..1382 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:24 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19415814..19416388 1..575 100 -> Plus
3R 19440703..19440831 576..704 100 -> Plus
3R 19454067..19454265 705..903 100 -> Plus
3R 19457120..19457597 904..1382 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:13:33 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15241536..15242110 1..575 100 -> Plus
arm_3R 15266425..15266553 576..704 100 -> Plus
arm_3R 15279789..15279987 705..903 100 -> Plus
arm_3R 15282842..15283319 904..1382 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:12 Download gff for GH25289.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19156645..19157219 1..575 100 -> Plus
3R 19181534..19181662 576..704 100 -> Plus
3R 19194898..19195096 705..903 100 -> Plus
3R 19197951..19198428 904..1382 99   Plus

GH25289.hyp Sequence

Translation from 391 to 1050

> GH25289.hyp
MSFLAMDHHHHHHHQQPRQHHLSMWPSFAVCLLLLQTTTTTMAIDLSRLY
GHMANPIVKRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMR
LCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKV
AIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDS
ELGDVKFFLEKLVNTGFLD*

GH25289.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-PB 219 CG31221-PB 1..219 1..219 1168 100 Plus
CG31221-PA 219 CG31221-PA 1..219 1..219 1168 100 Plus
CG31221-PC 254 CG31221-PC 1..219 1..219 1168 100 Plus

GH25289.pep Sequence

Translation from 391 to 1050

> GH25289.pep
MSFLAMDHHHHHHHQQPRQHHLSMWPSFAVCLLLLQTTTTTMAIDLSRLY
GHMANPIVKRSEACHPYEPFKCPGDGNCISIQYLCDGAPDCSDGYDEDMR
LCTAAKRPPVEETASFLQSLIASHGPNYLEKLFGSKARDALSPLGGVEKV
AIALSESQTIEDFGAALHLMRSDLEHLRSVFMAVENGDLGMLKSLGIKDS
ELGDVKFFLEKLVNTGFLD*

GH25289.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16553-PA 211 GF16553-PA 3..211 4..219 1038 90.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23328-PA 223 GG23328-PA 1..223 1..219 1131 96 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22296-PA 203 GH22296-PA 10..203 24..219 968 93.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31221-PB 219 CG31221-PB 1..219 1..219 1168 100 Plus
CG31221-PA 219 CG31221-PA 1..219 1..219 1168 100 Plus
CG31221-PC 254 CG31221-PC 1..219 1..219 1168 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23103-PA 208 GI23103-PA 16..208 25..219 949 94.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12652-PA 207 GL12652-PA 1..207 6..219 979 91.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16102-PA 207 GA16102-PA 1..207 6..219 979 91.1 Plus
Dpse\GA16102-PB 193 GA16102-PB 35..193 61..219 815 96.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26843-PA 221 GM26843-PA 1..221 1..219 1149 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19292-PA 223 GD19292-PA 1..223 1..219 1147 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22724-PA 208 GJ22724-PA 15..208 24..219 976 93.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13815-PA 226 GK13815-PA 31..226 22..219 887 93 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25607-PA 221 GE25607-PA 1..221 1..219 1116 96.4 Plus