Clone GH25366 Report

Search the DGRC for GH25366

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:253
Well:66
Vector:pOT2
Associated Gene/Transcriptbetaggt-II-RA
Protein status:GH25366.pep: gold
Preliminary Size:1599
Sequenced Size:1415

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18627 2001-01-01 Release 2 assignment
CG18627 2001-10-10 Blastp of sequenced clone
CG18627 2003-01-01 Sim4 clustering to Release 3
betaggt-II 2008-04-29 Release 5.5 accounting
betaggt-II 2008-08-15 Release 5.9 accounting
betaggt-II 2008-12-18 5.12 accounting

Clone Sequence Records

GH25366.complete Sequence

1415 bp (1415 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060784

> GH25366.complete
TTATTTGTTTGCTCGCAGCACTATTCCTGCCAATTAATAGAGTTAATCAA
GCGAAACAGCGCGCCGAAGAGGATCTGCCAGCCACCCGATACTCATTCAA
TTGAGCCCAATCAGCGATGGACTTCACGACCTTCGTAAAGCCCTCAAATG
GCGGTGGCGACAGCGGCGGTGGTGGTGATGCGGATGGCGGCGGCCAGAAG
CTGCAGTTCTGGAAGCATGTGGAGTACATCGAGAACCATGGGAAGCAGGA
GGACGACTACGAGTACTGCATGACCGAGTTTCTGCGCATGTCGGGCATCT
ATTGGGGCACCACTGCCCTGGACATTATGGGCCAGCTGGAGCGATTGGAG
CGCAAGTCCATCATCGAGTTTGTGAAGCGTTGTCAGTGTCCGAACACGGG
CGGATTCGCACCCTGCGAGGGCCACGATCCCCACCTGCTGTACACCCTGT
CGGCCATCCAGATCCTCTGCACCTACGACGCCCTCGAGGAGATCGACCGC
GAGGCGGTGGTCCGATTCGTGGTCGGACTGCAGCAGCCCGACGGCAGCTT
CTTTGGCGACAAGTGGGGCGAGGTGGACACCAGGTTCAGCTTCTGTGCGG
TGGCCTCCCTAACGCTGCTCGGCCGCATGGAGCAGACCATCGACGTGGAG
AAGGCGGTCAAGTTCGTGCTCTCGTGCTGCAATCAGACGGACGGTGGATT
CGGTTCCAAGCCGGGCGCCGAGTCGCATGCGGGGCTCATCTACTGCTGCG
TCGGCTTCTTCTCGCTGACCCATCGCCTGCATCTGCTCGACGTGGACAAA
CTGGGCTGGTGGCTCTGCGAGCGGCAGCTGCCCTCCGGTGGGCTAAATGG
ACGGCCCGAGAAGCTGCCGGATGTATGCTATTCGTGGTGGGTGCTCGCCT
CGCTCACCATCATGGGCCGCCTGCACTGGATCAGCTCGGAGAAGCTGCAG
CAGTTCATACTGTCGTGCCAGGACACGGAGACCGGTGGCTTCTCGGACAG
AACTGGCAACATGCCGGACATATTCCACACGCTGTTCGGCATCGGCGGAC
TCTCGCTACTGGGACATTCCGGCCTGAAGGCCATCAACCCAACGCTCTGC
ATGCCGCAGTACATCATCGACCGGCTGGGCATCAAGCCGCAACTATTGCC
GAGGCCATGAGGGGATTCATCGATTCCACATGCAGCCAGTGCGTAGCCAA
TGTGTAGTGCAGCAGACCTCTGACGTATTCCCACGCTAGCGTTTCTTAGT
TTTATTTGTAAAAAGACCAAAATTCCATAGCAGGAACACCCTTTCTTTAC
TCATTTTCTTCGTTATGCATTTACCCCTCTATTATTATTAAATATAGAAT
ATTTTGTATAGCGAACGAAAATCAGCAATAAACAAATATTTTACTTTAAA
AAAAAAAAAAAAAAA

GH25366.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-RA 1496 betaggt-II-RA 89..1487 1..1399 6995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2878804..2879530 1..733 3375 97.7 Plus
chr2L 23010047 chr2L 2879693..2880358 732..1397 3225 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879148..2879880 1..733 3665 100 Plus
2L 23513712 2L 2880043..2880710 732..1399 3340 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2879148..2879880 1..733 3665 100 Plus
2L 23513712 2L 2880043..2880710 732..1399 3340 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:16:52 has no hits.

GH25366.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:17:39 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2878804..2879529 1..732 92 -> Plus
chr2L 2879694..2880358 733..1397 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:54 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 1..1044 117..1160 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:10 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 1..1044 117..1160 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:14:05 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 1..1044 117..1160 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:03 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 1..1044 117..1160 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:02 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 1..1044 117..1160 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:43 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 25..1421 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:10 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 25..1421 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:14:05 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 37..1433 1..1397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:03 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 25..1421 1..1397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:02 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
betaggt-II-RA 37..1433 1..1397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:39 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2879148..2879879 1..732 100 -> Plus
2L 2880044..2880708 733..1397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:39 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2879148..2879879 1..732 100 -> Plus
2L 2880044..2880708 733..1397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:39 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2879148..2879879 1..732 100 -> Plus
2L 2880044..2880708 733..1397 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:14:05 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2879148..2879879 1..732 100 -> Plus
arm_2L 2880044..2880708 733..1397 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:01 Download gff for GH25366.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2879148..2879879 1..732 100 -> Plus
2L 2880044..2880708 733..1397 100   Plus

GH25366.hyp Sequence

Translation from 116 to 1159

> GH25366.hyp
MDFTTFVKPSNGGGDSGGGGDADGGGQKLQFWKHVEYIENHGKQEDDYEY
CMTEFLRMSGIYWGTTALDIMGQLERLERKSIIEFVKRCQCPNTGGFAPC
EGHDPHLLYTLSAIQILCTYDALEEIDREAVVRFVVGLQQPDGSFFGDKW
GEVDTRFSFCAVASLTLLGRMEQTIDVEKAVKFVLSCCNQTDGGFGSKPG
AESHAGLIYCCVGFFSLTHRLHLLDVDKLGWWLCERQLPSGGLNGRPEKL
PDVCYSWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMP
DIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYIIDRLGIKPQLLPRP*

GH25366.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-PA 347 CG18627-PA 1..347 1..347 1899 100 Plus
CG17565-PA 419 CG17565-PA 91..363 61..318 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 37..336 57..329 335 32.1 Plus
betaggt-I-PA 395 CG3469-PA 37..336 57..329 335 32.1 Plus

GH25366.pep Sequence

Translation from 116 to 1159

> GH25366.pep
MDFTTFVKPSNGGGDSGGGGDADGGGQKLQFWKHVEYIENHGKQEDDYEY
CMTEFLRMSGIYWGTTALDIMGQLERLERKSIIEFVKRCQCPNTGGFAPC
EGHDPHLLYTLSAIQILCTYDALEEIDREAVVRFVVGLQQPDGSFFGDKW
GEVDTRFSFCAVASLTLLGRMEQTIDVEKAVKFVLSCCNQTDGGFGSKPG
AESHAGLIYCCVGFFSLTHRLHLLDVDKLGWWLCERQLPSGGLNGRPEKL
PDVCYSWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMP
DIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYIIDRLGIKPQLLPRP*

GH25366.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14990-PA 341 GF14990-PA 1..340 1..346 1685 91 Plus
Dana\GF23591-PA 404 GF23591-PA 43..342 57..329 334 31.4 Plus
Dana\GF18495-PA 415 GF18495-PA 92..364 61..318 300 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24898-PA 345 GG24898-PA 1..345 1..347 1790 97.4 Plus
Dere\GG25031-PA 402 GG25031-PA 43..342 57..329 348 31.9 Plus
Dere\GG17001-PA 419 GG17001-PA 91..363 61..318 314 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10686-PA 342 GH10686-PA 1..342 1..346 1652 89.3 Plus
Dgri\GH13329-PA 388 GH13329-PA 44..341 57..327 330 30.8 Plus
Dgri\GH19342-PA 415 GH19342-PA 56..363 25..318 323 30.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:05
Subject Length Description Subject Range Query Range Score Percent Strand
betaggt-II-PA 347 CG18627-PA 1..347 1..347 1899 100 Plus
CG17565-PA 419 CG17565-PA 91..363 61..318 345 31.4 Plus
betaggt-I-PB 376 CG3469-PB 37..336 57..329 335 32.1 Plus
betaggt-I-PA 395 CG3469-PA 37..336 57..329 335 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11182-PA 341 GI11182-PA 1..338 1..344 1639 89 Plus
Dmoj\GI17803-PA 389 GI17803-PA 37..334 57..327 335 30.1 Plus
Dmoj\GI22551-PA 414 GI22551-PA 91..381 61..345 310 29.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26294-PA 342 GL26294-PA 1..342 1..347 1672 89.3 Plus
Dper\GL18644-PA 404 GL18644-PA 44..343 57..329 338 31.6 Plus
Dper\GL21606-PA 424 GL21606-PA 91..363 61..318 318 31.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15021-PA 342 GA15021-PA 1..342 1..347 1672 89.3 Plus
Dpse\GA17468-PA 405 GA17468-PA 44..343 57..329 338 31.6 Plus
Dpse\GA14558-PA 424 GA14558-PA 91..363 61..318 317 31.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18378-PA 346 GM18378-PA 1..346 1..347 1814 98.6 Plus
Dsec\GM15154-PA 425 GM15154-PA 91..363 61..318 297 29.9 Plus
Dsec\GM18504-PA 261 GM18504-PA 43..261 57..248 168 27.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23193-PA 212 GD23193-PA 71..212 206..347 753 99.3 Plus
Dsim\GD23193-PA 212 GD23193-PA 1..210 1..251 333 42.6 Plus
Dsim\GD19096-PA 419 GD19096-PA 91..363 61..318 297 29.9 Plus
Dsim\GD23309-PA 326 GD23309-PA 37..312 57..305 284 31 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18324-PA 345 GJ18324-PA 1..342 1..344 1640 87.8 Plus
Dvir\GJ17628-PA 396 GJ17628-PA 44..349 57..333 342 31 Plus
Dvir\GJ23741-PA 417 GJ23741-PA 91..371 61..327 310 30 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24285-PA 347 GK24285-PA 1..347 1..347 1561 87.6 Plus
Dwil\GK24474-PA 392 GK24474-PA 43..342 57..329 331 30.4 Plus
Dwil\GK13218-PA 419 GK13218-PA 91..367 61..327 322 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18191-PA 342 GE18191-PA 1..342 1..347 1776 97.1 Plus
Dyak\GE11266-PA 402 GE11266-PA 43..342 57..329 352 32.8 Plus
Dyak\GE24394-PA 419 GE24394-PA 91..363 61..318 312 31.8 Plus