Clone GH25379 Report

Gene	Date	Evidence
CG1274	2001-01-01	Release 2 assignment
CG1274	2001-10-10	Blastp of sequenced clone
CG1274	2003-01-01	Sim4 clustering to Release 3
Jafrac2	2008-04-29	Release 5.5 accounting
Jafrac2	2008-08-15	Release 5.9 accounting
Jafrac2	2008-12-18	5.12 accounting

Clone Sequence Records

GH25379.complete Sequence

1045 bp (1045 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060785

> GH25379.complete
CGGTCACACCAATGCCGGCAGAACAATTTGTTATTAAAACAAAAAGAGTT
AATTATAGCGCTTAAAAGCCCAATCATGTCCAAGTACTTATCTGTCCTAC
TGCTGTCCGCGGCACTCGTTGGAGCTGCCAAGCCGGAAGATAATGAATCG
TGCTATTCCTTCGCCGGCGGCTCCGTTTATCCCGACCAGCCGAAGGGCGA
CCATCAGCTGCAGTACACCAAGGCAGTCATTTCCAAGCCAGCTCCGCAGT
TCGAGGGCACCGCCGTGGTTAATAAGGAGATTGTGAAGCTATCATTGTCC
CAGTATCTAGGGAAATATGTGGTGCTACTCTTCTACCCACTGGACTTCAC
CTTTGTATGCCCAACGGAGATCATTGCCTTCTCCGACCGCATCGCCGAGT
TCAAGAAGATCAAGACCGAGGTGATTGGCGTCAGCGTGGACTCGCACTTC
ACCCACTTGGCCTGGATAAACACGCCGCGCAAGGAGGGCGGCCTGGGCGA
CGTGAAGATCCCACTGCTCTCCGATCTAACGCATAAGATCAGCAAGGACT
ACGGAGTCTACTTGGAGTCCAGCGGTCATGCGCTGCGCGGTCTCTTCATT
ATCGATCAGACCGGAGTGCTGCGACAGATCACCATGAATGATTTGCCCGT
GGGACGCTCTGTGGACGAGACTATTCGTCTGGTTCAGGCCTTCCAGTATA
CGGACACCCATGGAGAGGTTTGCCCAGCAGGTTGGCGGCCAGGTGCCGAT
ACGATCGTTCCCAATCCTGAGGAGAAGACGAAGTACTTTGCCAAGAACAA
CTAGGGACAGATAGAGATGCACATTACCTTAGTAGCCTAGCCCAGTTACA
TTCCTAATGTTCACGACTGAATCACGATGCAAACGAACAATCGCTAGAGT
CCTCTGTACAGAAAATCCAAATCCGCAATGCCACCGATTGTGAATATTTC
GCATTTGCTTTGTACAAAACATAGTTTGTTTATTTTACAGCATAACTGAG
ATATAAATAAATTCATGAAGTACAAAAAAAAAAAAAAAAAAAAAA

GH25379.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:15:26

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Jafrac2-RA	1056	Jafrac2-RA	32..1055	1..1024	5120	100	Plus
Jafrac2-RB	1187	Jafrac2-RB	232..1187	68..1023	4780	100	Plus
Jafrac1-RA	1013	Jafrac1-RA	231..343	313..425	250	81.4	Plus
Jafrac1-RA	1013	Jafrac1-RA	538..643	620..725	185	78.3	Plus
Jafrac1-RA	1013	Jafrac1-RA	366..436	448..518	160	81.6	Plus

Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:17:02

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
chr3L	24539361	chr3L	3042815..3043220	348..753	1985	99.3	Plus
chr3L	24539361	chr3L	3043278..3043548	753..1023	1310	98.9	Plus
chr3L	24539361	chr3L	3042417..3042579	67..229	815	100	Plus
chr3L	24539361	chr3L	3042646..3042763	230..347	575	99.2	Plus
chr3L	24539361	chr3L	3041757..3041824	1..68	340	100	Plus
chrX	22417052	chrX	13222046..13222251	313..518	340	77.7	Plus
chrU	10048995	chrU	7235093..7235159	135..69	260	92.5	Minus
chr3LHet	2555433	chr3LHet	1644502..1644568	69..135	260	92.5	Plus
chr3LHet	2555433	chr3LHet	1700175..1700241	69..135	260	92.5	Plus
chr3LHet	2555433	chr3LHet	1900820..1900886	69..135	260	92.5	Plus
chr3LHet	2555433	chr3LHet	1906703..1906769	69..135	260	92.5	Plus
chrX	22417052	chrX	13222353..13222458	620..725	185	78.3	Plus

Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:13 has no hits.

Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:00

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3L	28110227	3L	3043441..3043846	348..753	2030	100	Plus
3L	28110227	3L	3043904..3044175	753..1024	1360	100	Plus
3L	28110227	3L	3043043..3043205	67..229	815	100	Plus
3L	28110227	3L	3043272..3043389	230..347	590	100	Plus
3L	28110227	3L	3042383..3042450	1..68	340	100	Plus
X	23542271	X	13331215..13331420	313..518	340	77.7	Plus
3L	28110227	3L	26297184..26297250	69..135	260	92.5	Plus
3L	28110227	3L	26352853..26352919	69..135	260	92.5	Plus
3L	28110227	3L	26617402..26617468	69..135	260	92.5	Plus
3L	28110227	3L	26623285..26623351	69..135	260	92.5	Plus
3L	28110227	3L	27065948..27066014	69..135	260	92.5	Plus
3CEN	744266	3CEN	543958..544024	135..69	260	92.5	Minus
X	23542271	X	13331522..13331627	620..725	185	78.3	Plus

Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:38:47

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3L	28103327	3L	3043441..3043846	348..753	2030	100	Plus
3L	28103327	3L	3043904..3044175	753..1024	1360	100	Plus
3L	28103327	3L	3043043..3043205	67..229	815	100	Plus
3L	28103327	3L	3043272..3043389	230..347	590	100	Plus
3L	28103327	3L	3042383..3042450	1..68	340	100	Plus
3L	28103327	3L	26610502..26610568	69..135	260	92.5	Plus
3L	28103327	3L	26345953..26346019	69..135	260	92.5	Plus
3L	28103327	3L	26290284..26290350	69..135	260	92.5	Plus
3L	28103327	3L	27059048..27059114	69..135	260	92.5	Plus
3L	28103327	3L	26616385..26616451	69..135	260	92.5	Plus
X	23527363	X	13339313..13339425	313..425	250	81.4	Plus
X	23527363	X	13339620..13339725	620..725	185	78.3	Plus
3L	28103327	3L	26610597..26610652	296..351	175	87.5	Plus
3L	28103327	3L	26346048..26346103	296..351	175	87.5	Plus
3L	28103327	3L	26290379..26290434	296..351	175	87.5	Plus
3L	28103327	3L	27059143..27059196	296..349	165	87	Plus
3L	28103327	3L	26616480..26616533	296..349	165	87	Plus
X	23527363	X	13339448..13339518	448..518	160	81.6	Plus

Blast to na_te.dros performed on 2019-03-15 22:17:01 has no hits.

GH25379.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:17:44 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
chr3L	3041757..3041824	1..68	100	->	Plus
chr3L	3042419..3042579	69..229	100	->	Plus
chr3L	3042646..3042763	230..347	99	->	Plus
chr3L	3042815..3043220	348..753	99	->	Plus
chr3L	3043279..3043548	754..1023	98		Plus

Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:55:55 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RB	1..729	76..804	100		Plus

Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:56:25 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RB	1..729	76..804	100		Plus

Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:14:15 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RA	1..729	76..804	100		Plus

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:26:05 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RB	1..729	76..804	100		Plus

Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:12 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RA	1..729	76..804	100		Plus

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:42:59 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RA	9..1031	1..1023	100		Plus

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:56:25 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RA	9..1031	1..1023	100		Plus

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:14:15 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RA	25..1047	1..1023	100		Plus

Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:06 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RA	9..1031	1..1023	100		Plus

Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:12 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
Jafrac2-RA	25..1047	1..1023	100		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:44 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	3043045..3043205	69..229	100	->	Plus
3L	3043272..3043389	230..347	100	->	Plus
3L	3042383..3042450	1..68	100	->	Plus
3L	3043441..3043846	348..753	100	->	Plus
3L	3043905..3044174	754..1023	100		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:44 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	3043045..3043205	69..229	100	->	Plus
3L	3043272..3043389	230..347	100	->	Plus
3L	3042383..3042450	1..68	100	->	Plus
3L	3043441..3043846	348..753	100	->	Plus
3L	3043905..3044174	754..1023	100		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:17:44 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	3043045..3043205	69..229	100	->	Plus
3L	3043272..3043389	230..347	100	->	Plus
3L	3042383..3042450	1..68	100	->	Plus
3L	3043441..3043846	348..753	100	->	Plus
3L	3043905..3044174	754..1023	100		Plus

Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:14:15 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
arm_3L	3042383..3042450	1..68	100	->	Plus
arm_3L	3043045..3043205	69..229	100	->	Plus
arm_3L	3043272..3043389	230..347	100	->	Plus
arm_3L	3043441..3043846	348..753	100	->	Plus
arm_3L	3043905..3044174	754..1023	100		Plus

Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:02:45 Download gff for GH25379.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3L	3043441..3043846	348..753	100	->	Plus
3L	3043905..3044174	754..1023	100		Plus
3L	3042383..3042450	1..68	100	->	Plus
3L	3043045..3043205	69..229	100	->	Plus
3L	3043272..3043389	230..347	100	->	Plus

GH25379.hyp Sequence

Translation from 0 to 803

> GH25379.hyp
RSHQCRQNNLLLKQKELIIALKSPIMSKYLSVLLLSAALVGAAKPEDNES
CYSFAGGSVYPDQPKGDHQLQYTKAVISKPAPQFEGTAVVNKEIVKLSLS
QYLGKYVVLLFYPLDFTFVCPTEIIAFSDRIAEFKKIKTEVIGVSVDSHF
THLAWINTPRKEGGLGDVKIPLLSDLTHKISKDYGVYLESSGHALRGLFI
IDQTGVLRQITMNDLPVGRSVDETIRLVQAFQYTDTHGEVCPAGWRPGAD
TIVPNPEEKTKYFAKNN*

GH25379.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:27:25

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Jafrac2-PC	242	CG1274-PC	1..242	26..267	1260	100	Plus
Jafrac2-PB	242	CG1274-PB	1..242	26..267	1260	100	Plus
Jafrac2-PA	242	CG1274-PA	1..242	26..267	1260	100	Plus
Jafrac1-PE	194	CG1633-PE	4..190	77..263	657	66.3	Plus
Jafrac1-PD	194	CG1633-PD	4..190	77..263	657	66.3	Plus

GH25379.pep Sequence

Translation from 75 to 803

> GH25379.pep
MSKYLSVLLLSAALVGAAKPEDNESCYSFAGGSVYPDQPKGDHQLQYTKA
VISKPAPQFEGTAVVNKEIVKLSLSQYLGKYVVLLFYPLDFTFVCPTEII
AFSDRIAEFKKIKTEVIGVSVDSHFTHLAWINTPRKEGGLGDVKIPLLSD
LTHKISKDYGVYLESSGHALRGLFIIDQTGVLRQITMNDLPVGRSVDETI
RLVQAFQYTDTHGEVCPAGWRPGADTIVPNPEEKTKYFAKNN*

GH25379.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:14:52

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dana\GF24261-PA	244	GF24261-PA	1..243	1..242	1157	93	Plus
Dana\GF19402-PA	194	GF19402-PA	4..191	52..239	689	67	Plus
Dana\GF15932-PA	234	GF15932-PA	32..233	43..241	636	59.4	Plus
Dana\GF23670-PA	196	GF23670-PA	6..192	52..238	584	56.1	Plus
Dana\GF14910-PA	222	GF14910-PA	23..200	71..238	204	29.2	Plus

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:14:53

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dere\GG14898-PA	242	GG14898-PA	1..242	1..242	1264	97.9	Plus
Dere\GG17772-PA	194	GG17772-PA	4..190	52..238	683	66.8	Plus
Dere\GG16768-PA	234	GG16768-PA	32..233	43..241	651	60.4	Plus
Dere\GG15885-PA	196	GG15885-PA	6..196	52..242	591	55.5	Plus
Dere\GG24165-PA	220	GG24165-PA	27..200	79..240	194	32.8	Plus

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:14:54

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dgri\GH15986-PA	243	GH15986-PA	21..243	21..242	1123	93.7	Plus
Dgri\GH17487-PA	231	GH17487-PA	29..230	43..241	637	58.4	Plus
Dgri\GH14416-PA	195	GH14416-PA	3..191	51..238	557	51.3	Plus
Dgri\GH17696-PA	288	GH17696-PA	179..274	52..143	343	66.7	Plus
Dgri\GH11051-PA	225	GH11051-PA	34..187	81..228	188	29.2	Plus

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:20

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Jafrac2-PC	242	CG1274-PC	1..242	1..242	1260	100	Plus
Jafrac2-PB	242	CG1274-PB	1..242	1..242	1260	100	Plus
Jafrac2-PA	242	CG1274-PA	1..242	1..242	1260	100	Plus
Jafrac1-PE	194	CG1633-PE	4..190	52..238	657	66.3	Plus
Jafrac1-PD	194	CG1633-PD	4..190	52..238	657	66.3	Plus
Jafrac1-PC	194	CG1633-PC	4..190	52..238	657	66.3	Plus
Jafrac1-PA	194	CG1633-PA	4..190	52..238	657	66.3	Plus
Jafrac1-PB	194	CG1633-PB	4..190	52..238	657	66.3	Plus
Prx3-PA	234	CG5826-PA	32..233	43..241	641	60.4	Plus
CG6888-PA	196	CG6888-PA	6..192	52..238	557	56.1	Plus
Prx2540-2-PA	220	CG11765-PA	29..200	81..240	191	32	Plus
Prx2540-1-PA	220	CG12405-PA	29..200	81..240	190	32	Plus
CG12896-PA	220	CG12896-PA	29..200	81..240	187	31.4	Plus
Prx6005-PA	222	CG3083-PA	34..187	81..228	182	27.9	Plus

Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:14:54

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dmoj\GI16636-PA	243	GI16636-PA	1..243	1..242	1121	87.7	Plus
Dmoj\GI16105-PA	194	GI16105-PA	4..191	52..239	697	67	Plus
Dmoj\GI22813-PA	233	GI22813-PA	31..232	43..241	651	59.9	Plus
Dmoj\GI13545-PA	268	GI13545-PA	76..264	51..238	567	53.4	Plus
Dmoj\GI20198-PA	220	GI20198-PA	19..185	72..228	190	31.1	Plus

Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:14:55

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dper\GL16320-PA	204	GL16320-PA	15..204	54..242	934	92.6	Plus
Dper\GL26916-PA	194	GL26916-PA	4..191	52..239	669	64.9	Plus
Dper\GL13701-PA	233	GL13701-PA	16..232	31..241	629	54.4	Plus
Dper\GL20930-PA	194	GL20930-PA	4..190	52..238	563	55.1	Plus
Dper\GL11593-PA	220	GL11593-PA	19..200	72..240	190	31.3	Plus

Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:14:55

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dpse\GA11781-PA	243	GA11781-PA	1..243	1..242	1145	93	Plus
Dpse\GA14060-PA	200	GA14060-PA	10..197	52..239	670	64.9	Plus
Dpse\GA19159-PA	233	GA19159-PA	16..232	31..241	629	54.4	Plus
Dpse\GA28632-PA	194	GA28632-PA	4..190	52..238	562	55.1	Plus
Dpse\GA15914-PA	222	GA15914-PA	13..187	57..228	200	30.7	Plus

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:14:56

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsec\GM14524-PA	242	GM14524-PA	1..242	1..242	1284	99.6	Plus
Dsec\GM11621-PA	194	GM11621-PA	4..190	52..238	679	66.3	Plus
Dsec\GM16948-PA	234	GM16948-PA	32..233	43..241	652	60.4	Plus
Dsec\GM25516-PA	196	GM25516-PA	6..192	52..238	588	56.1	Plus
Dsec\GM20524-PA	220	GM20524-PA	27..200	79..240	201	33.3	Plus

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:14:56

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsim\GD13721-PA	242	GD13721-PA	1..242	1..242	1289	100	Plus
Dsim\GD17115-PA	194	GD17115-PA	4..190	52..238	679	66.3	Plus
Dsim\GD20225-PA	234	GD20225-PA	32..233	43..241	652	60.4	Plus
Dsim\GD14531-PA	196	GD14531-PA	6..192	52..238	588	56.1	Plus
Dsim\GD25983-PA	220	GD25983-PA	27..200	79..240	195	32.8	Plus

Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:14:57

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dvir\GJ12891-PA	244	GJ12891-PA	22..244	21..242	1111	93.3	Plus
Dvir\GJ15754-PA	194	GJ15754-PA	4..191	52..239	675	65.4	Plus
Dvir\GJ22817-PA	233	GJ22817-PA	31..232	43..241	653	60.4	Plus
Dvir\GJ11904-PA	195	GJ11904-PA	3..195	51..242	578	52.8	Plus
Dvir\GJ17911-PA	224	GJ17911-PA	8..187	52..228	211	29.3	Plus

Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:14:57

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dwil\GK16580-PA	248	GK16580-PA	14..248	9..242	1165	92.8	Plus
Dwil\GK25196-PA	213	GK25196-PA	23..210	52..239	682	64.9	Plus
Dwil\GK12986-PA	233	GK12986-PA	31..232	43..241	646	59.4	Plus
Dwil\GK19651-PA	196	GK19651-PA	6..192	52..238	591	55.6	Plus
Dwil\GK20591-PA	196	GK20591-PA	6..192	52..238	590	55.1	Plus

Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:14:58

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dyak\GE20352-PA	242	GE20352-PA	1..242	1..242	1266	97.5	Plus
Dyak\Jafrac1-PA	194	GE17062-PA	4..190	52..238	678	66.3	Plus
Dyak\GE25263-PA	234	GE25263-PA	42..233	52..241	649	61.5	Plus
Dyak\GE22230-PA	196	GE22230-PA	6..192	52..238	587	56.1	Plus
Dyak\GE19359-PA	220	GE19359-PA	27..200	79..240	193	32.8	Plus

Library:	GH
Tissue Source:	Drosophila melanogaster head
Created by:	Ling Hong
Date Registered:	1998-06-02
Comments:	Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:	253
Well:	79
Vector:	pOT2
Associated Gene/Transcript	Jafrac2-RA
Protein status:	GH25379.pep: gold
Preliminary Size:	1227
Sequenced Size:	1045

Clone GH25379 Report

Clone and Library Details

Associated Genes

Clone Sequence Records

GH25379.complete Sequence

GH25379.complete Blast Records

GH25379.complete Sim4 Records

GH25379.hyp Sequence

GH25379.hyp Blast Records

GH25379.pep Sequence

GH25379.pep Blast Records