Clone GH25462 Report

Search the DGRC for GH25462

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:254
Well:62
Vector:pOT2
Associated Gene/TranscriptCG32450-RA
Protein status:GH25462.pep: gold
Preliminary Size:925
Sequenced Size:789

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32450 2002-06-07 Blastp of sequenced clone
CG32450 2003-01-01 Sim4 clustering to Release 3
CG32450 2008-04-29 Release 5.5 accounting
CG32450 2008-08-15 Release 5.9 accounting
CG32450 2008-12-18 5.12 accounting

Clone Sequence Records

GH25462.complete Sequence

789 bp (789 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119545

> GH25462.complete
AAAATTCGACGTTGCTGTTTTTTTTGGTTTAACATTCTCTATATACATTT
TTTTAAAAATATGGATATAACGGTACCGCCGCCGGACTCGCACTGGTCGT
TGAGGTTTGTGGACATCGTGAAGCCTTTTCCAAAACATACTTTGGCCAAT
GCCACTTATAAGATCATTCGCTTCTTTTACCCACCCTTTGCCCTGGAAAC
CGTCGATGTCACCCACGTGGTCAGCGATCCCGAGCTGAATAGTTTAAACG
TGGGGCTGTTTGTGGTAGTTCCCTTAATTCTGGCCTGCATCGGCTATGGG
GTGTACAAATATGTGCGGAGTATGCATACAGTGGCTAAACGGACACCATT
AAAATTGTACGAGCTTGAACAGCGTATGAAAGACAAGTACGGTCCGGAAT
ACAAGCAGGGAATCTGGAAGCGAAAGGACATTTCTGACCCCCTCCTATTA
ACCACTGATCCATCCGAACCAAAAGCAAAGAGATGTGAAAGCAGCAATGC
CCACTGGCTGCGCAAAACCGATAGATCCGATGATTAATTAAATCAACACT
CAGTTGGATCCCCACTCGGATATGACTGGGGATCTTAAAATCGAGAATCG
AGGAAAGTACCTTCTCGAATCCAACCAGGCTTTGTACCCTTCTAAGCAAC
AAAATCGATATGATCCTTCAATTCCGTTTAATGATTGAGACCTTTTTTGC
GACTGGAAAAGTGTCAGCTTTGGGCTTTCTCGTTTGGCGCAATAAAATGA
AGTGATTGTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAA

GH25462.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450.a 1669 CG32450.a 741..1505 1..765 3825 100 Plus
CG32450-RA 1056 CG32450-RA 128..892 1..765 3825 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22319127..22319568 324..765 2210 100 Plus
chr3L 24539361 chr3L 22318745..22319068 1..324 1620 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22330216..22330657 324..765 2210 100 Plus
3L 28110227 3L 22329834..22330157 1..324 1620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22323316..22323757 324..765 2210 100 Plus
3L 28103327 3L 22322934..22323257 1..324 1620 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:51:03 has no hits.

GH25462.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:52:22 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22318745..22319068 1..324 100 -> Plus
chr3L 22319128..22319568 325..765 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:56:01 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 1..477 61..537 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:28 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 1..477 61..537 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:02 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 1..477 61..537 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:23 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 1..477 61..537 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:17:03 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 1..477 61..537 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:12:13 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 57..821 1..765 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:28 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 57..821 1..765 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:02 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 57..821 1..765 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:23 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 57..821 1..765 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:17:03 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
CG32450-RA 57..821 1..765 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:22 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22329834..22330157 1..324 100 -> Plus
3L 22330217..22330657 325..765 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:22 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22329834..22330157 1..324 100 -> Plus
3L 22330217..22330657 325..765 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:52:22 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22329834..22330157 1..324 100 -> Plus
3L 22330217..22330657 325..765 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:02 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22323317..22323757 325..765 100   Plus
arm_3L 22322934..22323257 1..324 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:38 Download gff for GH25462.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22322934..22323257 1..324 100 -> Plus
3L 22323317..22323757 325..765 100   Plus

GH25462.hyp Sequence

Translation from 0 to 536

> GH25462.hyp
KIRRCCFFWFNILYIHFFKNMDITVPPPDSHWSLRFVDIVKPFPKHTLAN
ATYKIIRFFYPPFALETVDVTHVVSDPELNSLNVGLFVVVPLILACIGYG
VYKYVRSMHTVAKRTPLKLYELEQRMKDKYGPEYKQGIWKRKDISDPLLL
TTDPSEPKAKRCESSNAHWLRKTDRSDD*

GH25462.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 158 CG32450-PA 1..158 21..178 848 100 Plus

GH25462.pep Sequence

Translation from 60 to 536

> GH25462.pep
MDITVPPPDSHWSLRFVDIVKPFPKHTLANATYKIIRFFYPPFALETVDV
THVVSDPELNSLNVGLFVVVPLILACIGYGVYKYVRSMHTVAKRTPLKLY
ELEQRMKDKYGPEYKQGIWKRKDISDPLLLTTDPSEPKAKRCESSNAHWL
RKTDRSDD*

GH25462.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10976-PA 235 GF10976-PA 1..159 1..150 370 47.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16253-PA 219 GG16253-PA 1..175 1..158 623 69.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32450-PA 158 CG32450-PA 1..158 1..158 848 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22441-PA 213 GM22441-PA 1..164 1..158 662 81.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15026-PA 214 GD15026-PA 1..165 1..158 705 84.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11631-PA 109 GJ11631-PA 11..56 13..58 132 52.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13087-PA 100 GK13087-PA 3..92 2..93 168 38.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22613-PA 218 GE22613-PA 1..160 1..150 628 75.6 Plus
Dyak\GE22612-PA 218 GE22612-PA 1..160 1..150 628 75.6 Plus