Clone GH25602 Report

Search the DGRC for GH25602

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:256
Well:2
Vector:pOT2
Associated Gene/TranscriptTM4SF-RA
Protein status:GH25602.pep: gold
Sequenced Size:1244

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
TM4SF-RA 2009-01-15 Manual selection by Sue Celniker

Clone Sequence Records

GH25602.complete Sequence

1244 bp assembled on 2009-03-10

GenBank Submission: BT072819.1

> GH25602.complete
ATCGAAAGTCCACACACACGCACACCAGCACCAATACCCATACCATACCC
ATACCCACGGCGACATATGCACACAATCGCAGTCGGATTCGGTTTATTAA
CGGTAGTTCAGTGATTGCGGGAAAGGGACAGCGAGCGAGCAGCGAGGATA
ACGGGAAAGGATGGCATTGCCGAAGAAAATTAAATGTTTTAAGTATTTGG
TTTACAGTTATGTGGTGCTCCTAGCGCTGACTGGAGCTGCGCAGATCTTC
CTGGGCACATCCCTGCTCTGGGGTCACTCGGTCTACTATGGAATTGTGCA
GAACAAGCTGTGGGCTCCGGCCGCGATCCTGCTTTGCCTGGGACCCGTCA
CCTTCATCCTCTGCTGGATGGGCTGCCAGGCCACCAATCAACGCAAGCGA
TGCCTGCTGGGAATGTTTGCCGCCCTTTTGGTTGCCTGCATCTGTGTTCA
GTTCATCATCTGCGGCTGGTCGCTGGCCATGAGGGAGAACCTGCCCACTT
CCGTGGAGATCTTCATCGACGACTCCTTTGTCGAGTTCTTAGACAAGTTT
TCGCGCACCAAGGTGGATAACCTACATCTGTGGAATAGGATGCAGTCGCA
GTTGCAATGCTGCGGCGTCGACGGACCTCTCGATTACCGCCGACTTTCGC
TGCCCTGGTCCTGCTGCTCGCGCCCGGAGCACGCCTACGAGTCAGCATGT
GATACCCACTACAAGCGCGGATGCCTGGCCGTCGTATCGGAGCAGATCAG
GAACCGCCTGCTGATCACCGCCTTCGGAGCTGCCATCATAGCCATATTCC
AGAGCCTGGGAATCTTCTGTGCTGTCCACCTGACCATTCTGTTCGGCAAG
AACGACAACACCCATCCCATGAACATGAACCGGAAAAAGAAGCAGCAGCA
GTTCTTGCCCCTGACCATACAGGACAAGAGGCACGACATGCCCTCGCCCA
TCAATCTATCCCCTTCAGCACCCGGGCAGCGGGTTTTAAAAACTGCTCTG
CCCTCGGCCATGCACAAATGACAGACGATTAGCTTTTAAGGATGCAAAAA
TTTATGGAAACTCCAAAGAAAAAGTATAAAAAAAATGTTGTAAACTGAGA
TGGAATGAATATAACTGTGACCCTCAATGTTACGTTATGGTAATTTTAAA
CAATTTAACGTTCGAGAAAAGAAACAACATTTGAATTTGGATTAACTCTC
CAGTAGTTTAATTAAAGCTTAAAAACAAAAAAAAAAAAAAAAAA

GH25602.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
TM4SF.b 1450 TM4SF.b 219..1446 1..1228 6140 100 Plus
TM4SF-RA 1800 TM4SF-RA 569..1796 1..1228 6140 100 Plus
TM4SF-RB 2209 TM4SF-RB 1203..2205 226..1228 5015 100 Plus
TM4SF-RB 2209 TM4SF-RB 313..538 1..226 1130 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19766471..19766897 800..1226 2135 100 Plus
chr2R 21145070 chr2R 19764776..19765001 1..226 1130 100 Plus
chr2R 21145070 chr2R 19766195..19766397 600..802 1015 100 Plus
chr2R 21145070 chr2R 19765666..19765855 226..415 950 100 Plus
chr2R 21145070 chr2R 19765917..19766103 415..601 935 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23880428..23880856 800..1228 2145 100 Plus
2R 25286936 2R 23878733..23878958 1..226 1130 100 Plus
2R 25286936 2R 23880152..23880354 600..802 1015 100 Plus
2R 25286936 2R 23879623..23879812 226..415 950 100 Plus
2R 25286936 2R 23879874..23880060 415..601 935 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23881627..23882055 800..1228 2145 100 Plus
2R 25260384 2R 23879932..23880157 1..226 1130 100 Plus
2R 25260384 2R 23881351..23881553 600..802 1015 100 Plus
2R 25260384 2R 23880822..23881011 226..415 950 100 Plus
2R 25260384 2R 23881073..23881259 415..601 935 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:11:54 has no hits.

GH25602.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:12:53 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19766197..19766397 602..802 100 -> Plus
chr2R 19764776..19765001 1..226 100 -> Plus
chr2R 19765667..19765855 227..415 100 -> Plus
chr2R 19765918..19766103 416..601 100 -> Plus
chr2R 19766474..19766897 803..1226 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:52:26 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RA 1..861 161..1021 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:40:01 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RA 1..861 161..1021 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:46 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RC 1..879 161..1039 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:30 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RC 1..879 161..1039 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-03-10 16:16:56 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RA 275..1500 1..1226 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:40:01 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RA 275..1500 1..1226 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:46 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RA 227..1452 1..1226 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:30 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
TM4SF-RA 227..1452 1..1226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:12:53 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23878733..23878958 1..226 100 -> Plus
2R 23879624..23879812 227..415 100 -> Plus
2R 23879875..23880060 416..601 100 -> Plus
2R 23880154..23880354 602..802 100 -> Plus
2R 23880431..23880854 803..1226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:12:53 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23878733..23878958 1..226 100 -> Plus
2R 23879624..23879812 227..415 100 -> Plus
2R 23879875..23880060 416..601 100 -> Plus
2R 23880154..23880354 602..802 100 -> Plus
2R 23880431..23880854 803..1226 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:12:53 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23878733..23878958 1..226 100 -> Plus
2R 23879624..23879812 227..415 100 -> Plus
2R 23879875..23880060 416..601 100 -> Plus
2R 23880154..23880354 602..802 100 -> Plus
2R 23880431..23880854 803..1226 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:46 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19767677..19767877 602..802 100 -> Plus
arm_2R 19766256..19766481 1..226 100 -> Plus
arm_2R 19767147..19767335 227..415 100 -> Plus
arm_2R 19767398..19767583 416..601 100 -> Plus
arm_2R 19767954..19768377 803..1226 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:14:14 Download gff for GH25602.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23881371..23881571 602..802 100 -> Plus
2R 23879950..23880175 1..226 100 -> Plus
2R 23880841..23881029 227..415 100 -> Plus
2R 23881092..23881277 416..601 100 -> Plus
2R 23881648..23882071 803..1226 100   Plus

GH25602.pep Sequence

Translation from 160 to 1020

> GH25602.pep
MALPKKIKCFKYLVYSYVVLLALTGAAQIFLGTSLLWGHSVYYGIVQNKL
WAPAAILLCLGPVTFILCWMGCQATNQRKRCLLGMFAALLVACICVQFII
CGWSLAMRENLPTSVEIFIDDSFVEFLDKFSRTKVDNLHLWNRMQSQLQC
CGVDGPLDYRRLSLPWSCCSRPEHAYESACDTHYKRGCLAVVSEQIRNRL
LITAFGAAIIAIFQSLGIFCAVHLTILFGKNDNTHPMNMNRKKKQQQFLP
LTIQDKRHDMPSPINLSPSAPGQRVLKTALPSAMHK*

GH25602.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12869-PA 286 GF12869-PA 1..286 1..286 1515 98.6 Plus
Dana\GF12397-PA 239 GF12397-PA 10..230 11..225 226 27.9 Plus
Dana\GF14328-PA 235 GF14328-PA 6..221 7..221 182 25.8 Plus
Dana\GF15597-PA 313 GF15597-PA 17..254 9..216 152 25 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22896-PA 286 GG22896-PA 1..286 1..286 1529 99.3 Plus
Dere\GG22652-PA 239 GG22652-PA 10..230 11..225 218 26.6 Plus
Dere\GG21299-PA 235 GG21299-PA 6..221 7..221 190 26.2 Plus
Dere\GG25112-PA 312 GG25112-PA 18..255 9..216 177 26.6 Plus
Dere\GG25316-PA 311 GG25316-PA 6..276 1..261 165 22.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21688-PA 286 GH21688-PA 1..286 1..286 1510 97.9 Plus
Dgri\GH20509-PA 240 GH20509-PA 9..230 10..225 231 28.6 Plus
Dgri\GH13315-PA 235 GH13315-PA 6..221 7..221 163 24 Plus
Dgri\GH11020-PA 313 GH11020-PA 17..256 9..218 161 25.2 Plus
Dgri\GH13873-PA 247 GH13873-PA 4..233 3..224 155 23.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
TM4SF-PC 292 CG11303-PC 1..286 1..286 1531 100 Plus
TM4SF-PA 286 CG11303-PA 1..286 1..286 1531 100 Plus
Tsp47F-PB 239 CG9033-PB 10..229 11..224 229 27.3 Plus
Tsp39D-PB 235 CG8666-PB 6..221 7..221 215 27.6 Plus
Tsp26A-PC 277 CG9093-PC 18..265 9..224 186 25.6 Plus
Tsp26A-PD 275 CG9093-PD 18..263 9..224 185 26.2 Plus
Tsp26A-PB 314 CG9093-PB 18..255 9..216 172 25 Plus
Tsp29Fa-PC 248 CG9494-PC 12..234 11..224 148 22.3 Plus
Tsp29Fa-PB 248 CG9494-PB 12..234 11..224 148 22.3 Plus
Tsp29Fa-PA 248 CG9494-PA 12..234 11..224 148 22.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18842-PA 286 GI18842-PA 1..286 1..286 1505 97.9 Plus
Dmoj\GI21055-PA 240 GI21055-PA 9..230 10..225 226 29 Plus
Dmoj\GI12231-PA 235 GI12231-PA 6..221 7..221 181 24 Plus
Dmoj\GI17426-PA 308 GI17426-PA 6..276 1..262 158 20.4 Plus
Dmoj\GI17539-PA 317 GI17539-PA 17..253 9..215 155 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11172-PA 287 GL11172-PA 1..287 1..286 1496 97.6 Plus
Dper\GL10398-PA 239 GL10398-PA 10..230 11..225 223 28.3 Plus
Dper\GL26662-PA 235 GL26662-PA 6..221 7..221 168 24.9 Plus
Dper\GL25578-PA 248 GL25578-PA 4..234 3..224 154 23.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10902-PA 287 GA10902-PA 1..287 1..286 1496 97.6 Plus
Dpse\GA21493-PA 239 GA21493-PA 10..230 11..225 225 28.3 Plus
Dpse\GA21246-PA 235 GA21246-PA 6..221 7..221 169 25.3 Plus
Dpse\GA21830-PA 248 GA21830-PA 4..234 3..224 154 23.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16055-PA 286 GM16055-PA 1..286 1..286 1534 100 Plus
Dsec\GM17854-PA 139 GM17854-PA 1..139 148..286 754 100 Plus
Dsec\GM23410-PA 235 GM23410-PA 6..221 7..221 194 27.1 Plus
Dsec\GM20434-PA 225 GM20434-PA 6..216 21..225 186 25.6 Plus
Dsec\GM18589-PA 254 GM18589-PA 18..253 9..214 174 26 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11804-PA 286 GD11804-PA 1..286 1..286 1528 99.7 Plus
Dsim\GD25905-PA 246 GD25905-PA 10..237 11..225 199 25.8 Plus
Dsim\GD24319-PA 235 GD24319-PA 6..221 7..221 186 26.2 Plus
Dsim\GD23377-PA 314 GD23377-PA 18..255 9..216 175 25.8 Plus
Dsim\GD23575-PA 308 GD23575-PA 6..276 1..261 155 20.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21871-PA 286 GJ21871-PA 1..286 1..286 1505 97.9 Plus
Dvir\GJ21977-PA 240 GJ21977-PA 10..230 11..225 221 28.7 Plus
Dvir\GJ17850-PA 235 GJ17850-PA 6..221 7..221 175 24.9 Plus
Dvir\GJ15439-PA 313 GJ15439-PA 17..254 9..216 162 25.4 Plus
Dvir\GJ18361-PA 310 GJ18361-PA 6..278 1..262 157 20.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15711-PA 286 GK15711-PA 1..286 1..286 1510 98.3 Plus
Dwil\GK21888-PA 239 GK21888-PA 9..230 10..225 221 27.7 Plus
Dwil\GK18739-PA 235 GK18739-PA 6..221 7..221 175 24.9 Plus
Dwil\GK24538-PA 248 GK24538-PA 4..231 3..221 159 24 Plus
Dwil\GK24539-PA 308 GK24539-PA 6..276 1..261 155 20.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14334-PA 286 GE14334-PA 1..286 1..286 1529 99.3 Plus
Dyak\GE13526-PA 239 GE13526-PA 10..230 11..225 221 27.1 Plus
Dyak\GE12914-PA 235 GE12914-PA 6..221 7..221 182 25.8 Plus
Dyak\GE25811-PA 275 GE25811-PA 18..263 9..224 174 26.2 Plus
Dyak\GE18806-PA 248 GE18806-PA 4..234 3..224 164 23.8 Plus

GH25602.hyp Sequence

Translation from 160 to 1020

> GH25602.hyp
MALPKKIKCFKYLVYSYVVLLALTGAAQIFLGTSLLWGHSVYYGIVQNKL
WAPAAILLCLGPVTFILCWMGCQATNQRKRCLLGMFAALLVACICVQFII
CGWSLAMRENLPTSVEIFIDDSFVEFLDKFSRTKVDNLHLWNRMQSQLQC
CGVDGPLDYRRLSLPWSCCSRPEHAYESACDTHYKRGCLAVVSEQIRNRL
LITAFGAAIIAIFQSLGIFCAVHLTILFGKNDNTHPMNMNRKKKQQQFLP
LTIQDKRHDMPSPINLSPSAPGQRVLKTALPSAMHK*

GH25602.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
TM4SF-PA 286 CG11303-PA 1..286 1..286 1531 100 Plus
TM4SF-PC 292 CG11303-PC 1..286 1..286 1531 100 Plus
Tsp47F-PB 239 CG9033-PB 10..229 11..224 229 27.3 Plus
Tsp39D-PB 235 CG8666-PB 6..221 7..221 215 27.6 Plus
Tsp26A-PC 277 CG9093-PC 18..265 9..224 186 25.6 Plus