BDGP Sequence Production Resources |
Search the DGRC for GH25602
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 256 |
Well: | 2 |
Vector: | pOT2 |
Associated Gene/Transcript | TM4SF-RA |
Protein status: | GH25602.pep: gold |
Sequenced Size: | 1244 |
Gene | Date | Evidence |
---|---|---|
TM4SF-RA | 2009-01-15 | Manual selection by Sue Celniker |
1244 bp assembled on 2009-03-10
GenBank Submission: BT072819.1
> GH25602.complete ATCGAAAGTCCACACACACGCACACCAGCACCAATACCCATACCATACCC ATACCCACGGCGACATATGCACACAATCGCAGTCGGATTCGGTTTATTAA CGGTAGTTCAGTGATTGCGGGAAAGGGACAGCGAGCGAGCAGCGAGGATA ACGGGAAAGGATGGCATTGCCGAAGAAAATTAAATGTTTTAAGTATTTGG TTTACAGTTATGTGGTGCTCCTAGCGCTGACTGGAGCTGCGCAGATCTTC CTGGGCACATCCCTGCTCTGGGGTCACTCGGTCTACTATGGAATTGTGCA GAACAAGCTGTGGGCTCCGGCCGCGATCCTGCTTTGCCTGGGACCCGTCA CCTTCATCCTCTGCTGGATGGGCTGCCAGGCCACCAATCAACGCAAGCGA TGCCTGCTGGGAATGTTTGCCGCCCTTTTGGTTGCCTGCATCTGTGTTCA GTTCATCATCTGCGGCTGGTCGCTGGCCATGAGGGAGAACCTGCCCACTT CCGTGGAGATCTTCATCGACGACTCCTTTGTCGAGTTCTTAGACAAGTTT TCGCGCACCAAGGTGGATAACCTACATCTGTGGAATAGGATGCAGTCGCA GTTGCAATGCTGCGGCGTCGACGGACCTCTCGATTACCGCCGACTTTCGC TGCCCTGGTCCTGCTGCTCGCGCCCGGAGCACGCCTACGAGTCAGCATGT GATACCCACTACAAGCGCGGATGCCTGGCCGTCGTATCGGAGCAGATCAG GAACCGCCTGCTGATCACCGCCTTCGGAGCTGCCATCATAGCCATATTCC AGAGCCTGGGAATCTTCTGTGCTGTCCACCTGACCATTCTGTTCGGCAAG AACGACAACACCCATCCCATGAACATGAACCGGAAAAAGAAGCAGCAGCA GTTCTTGCCCCTGACCATACAGGACAAGAGGCACGACATGCCCTCGCCCA TCAATCTATCCCCTTCAGCACCCGGGCAGCGGGTTTTAAAAACTGCTCTG CCCTCGGCCATGCACAAATGACAGACGATTAGCTTTTAAGGATGCAAAAA TTTATGGAAACTCCAAAGAAAAAGTATAAAAAAAATGTTGTAAACTGAGA TGGAATGAATATAACTGTGACCCTCAATGTTACGTTATGGTAATTTTAAA CAATTTAACGTTCGAGAAAAGAAACAACATTTGAATTTGGATTAACTCTC CAGTAGTTTAATTAAAGCTTAAAAACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TM4SF.b | 1450 | TM4SF.b | 219..1446 | 1..1228 | 6140 | 100 | Plus |
TM4SF-RA | 1800 | TM4SF-RA | 569..1796 | 1..1228 | 6140 | 100 | Plus |
TM4SF-RB | 2209 | TM4SF-RB | 1203..2205 | 226..1228 | 5015 | 100 | Plus |
TM4SF-RB | 2209 | TM4SF-RB | 313..538 | 1..226 | 1130 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19766471..19766897 | 800..1226 | 2135 | 100 | Plus |
chr2R | 21145070 | chr2R | 19764776..19765001 | 1..226 | 1130 | 100 | Plus |
chr2R | 21145070 | chr2R | 19766195..19766397 | 600..802 | 1015 | 100 | Plus |
chr2R | 21145070 | chr2R | 19765666..19765855 | 226..415 | 950 | 100 | Plus |
chr2R | 21145070 | chr2R | 19765917..19766103 | 415..601 | 935 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 23880428..23880856 | 800..1228 | 2145 | 100 | Plus |
2R | 25286936 | 2R | 23878733..23878958 | 1..226 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 23880152..23880354 | 600..802 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 23879623..23879812 | 226..415 | 950 | 100 | Plus |
2R | 25286936 | 2R | 23879874..23880060 | 415..601 | 935 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 23881627..23882055 | 800..1228 | 2145 | 100 | Plus |
2R | 25260384 | 2R | 23879932..23880157 | 1..226 | 1130 | 100 | Plus |
2R | 25260384 | 2R | 23881351..23881553 | 600..802 | 1015 | 100 | Plus |
2R | 25260384 | 2R | 23880822..23881011 | 226..415 | 950 | 100 | Plus |
2R | 25260384 | 2R | 23881073..23881259 | 415..601 | 935 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19766197..19766397 | 602..802 | 100 | -> | Plus |
chr2R | 19764776..19765001 | 1..226 | 100 | -> | Plus |
chr2R | 19765667..19765855 | 227..415 | 100 | -> | Plus |
chr2R | 19765918..19766103 | 416..601 | 100 | -> | Plus |
chr2R | 19766474..19766897 | 803..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RA | 1..861 | 161..1021 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RA | 1..861 | 161..1021 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RC | 1..879 | 161..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RC | 1..879 | 161..1039 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RA | 275..1500 | 1..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RA | 275..1500 | 1..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RA | 227..1452 | 1..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
TM4SF-RA | 227..1452 | 1..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23878733..23878958 | 1..226 | 100 | -> | Plus |
2R | 23879624..23879812 | 227..415 | 100 | -> | Plus |
2R | 23879875..23880060 | 416..601 | 100 | -> | Plus |
2R | 23880154..23880354 | 602..802 | 100 | -> | Plus |
2R | 23880431..23880854 | 803..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23878733..23878958 | 1..226 | 100 | -> | Plus |
2R | 23879624..23879812 | 227..415 | 100 | -> | Plus |
2R | 23879875..23880060 | 416..601 | 100 | -> | Plus |
2R | 23880154..23880354 | 602..802 | 100 | -> | Plus |
2R | 23880431..23880854 | 803..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23878733..23878958 | 1..226 | 100 | -> | Plus |
2R | 23879624..23879812 | 227..415 | 100 | -> | Plus |
2R | 23879875..23880060 | 416..601 | 100 | -> | Plus |
2R | 23880154..23880354 | 602..802 | 100 | -> | Plus |
2R | 23880431..23880854 | 803..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19767677..19767877 | 602..802 | 100 | -> | Plus |
arm_2R | 19766256..19766481 | 1..226 | 100 | -> | Plus |
arm_2R | 19767147..19767335 | 227..415 | 100 | -> | Plus |
arm_2R | 19767398..19767583 | 416..601 | 100 | -> | Plus |
arm_2R | 19767954..19768377 | 803..1226 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 23881371..23881571 | 602..802 | 100 | -> | Plus |
2R | 23879950..23880175 | 1..226 | 100 | -> | Plus |
2R | 23880841..23881029 | 227..415 | 100 | -> | Plus |
2R | 23881092..23881277 | 416..601 | 100 | -> | Plus |
2R | 23881648..23882071 | 803..1226 | 100 | Plus |
Translation from 160 to 1020
> GH25602.pep MALPKKIKCFKYLVYSYVVLLALTGAAQIFLGTSLLWGHSVYYGIVQNKL WAPAAILLCLGPVTFILCWMGCQATNQRKRCLLGMFAALLVACICVQFII CGWSLAMRENLPTSVEIFIDDSFVEFLDKFSRTKVDNLHLWNRMQSQLQC CGVDGPLDYRRLSLPWSCCSRPEHAYESACDTHYKRGCLAVVSEQIRNRL LITAFGAAIIAIFQSLGIFCAVHLTILFGKNDNTHPMNMNRKKKQQQFLP LTIQDKRHDMPSPINLSPSAPGQRVLKTALPSAMHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12869-PA | 286 | GF12869-PA | 1..286 | 1..286 | 1515 | 98.6 | Plus |
Dana\GF12397-PA | 239 | GF12397-PA | 10..230 | 11..225 | 226 | 27.9 | Plus |
Dana\GF14328-PA | 235 | GF14328-PA | 6..221 | 7..221 | 182 | 25.8 | Plus |
Dana\GF15597-PA | 313 | GF15597-PA | 17..254 | 9..216 | 152 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22896-PA | 286 | GG22896-PA | 1..286 | 1..286 | 1529 | 99.3 | Plus |
Dere\GG22652-PA | 239 | GG22652-PA | 10..230 | 11..225 | 218 | 26.6 | Plus |
Dere\GG21299-PA | 235 | GG21299-PA | 6..221 | 7..221 | 190 | 26.2 | Plus |
Dere\GG25112-PA | 312 | GG25112-PA | 18..255 | 9..216 | 177 | 26.6 | Plus |
Dere\GG25316-PA | 311 | GG25316-PA | 6..276 | 1..261 | 165 | 22.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21688-PA | 286 | GH21688-PA | 1..286 | 1..286 | 1510 | 97.9 | Plus |
Dgri\GH20509-PA | 240 | GH20509-PA | 9..230 | 10..225 | 231 | 28.6 | Plus |
Dgri\GH13315-PA | 235 | GH13315-PA | 6..221 | 7..221 | 163 | 24 | Plus |
Dgri\GH11020-PA | 313 | GH11020-PA | 17..256 | 9..218 | 161 | 25.2 | Plus |
Dgri\GH13873-PA | 247 | GH13873-PA | 4..233 | 3..224 | 155 | 23.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TM4SF-PC | 292 | CG11303-PC | 1..286 | 1..286 | 1531 | 100 | Plus |
TM4SF-PA | 286 | CG11303-PA | 1..286 | 1..286 | 1531 | 100 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 10..229 | 11..224 | 229 | 27.3 | Plus |
Tsp39D-PB | 235 | CG8666-PB | 6..221 | 7..221 | 215 | 27.6 | Plus |
Tsp26A-PC | 277 | CG9093-PC | 18..265 | 9..224 | 186 | 25.6 | Plus |
Tsp26A-PD | 275 | CG9093-PD | 18..263 | 9..224 | 185 | 26.2 | Plus |
Tsp26A-PB | 314 | CG9093-PB | 18..255 | 9..216 | 172 | 25 | Plus |
Tsp29Fa-PC | 248 | CG9494-PC | 12..234 | 11..224 | 148 | 22.3 | Plus |
Tsp29Fa-PB | 248 | CG9494-PB | 12..234 | 11..224 | 148 | 22.3 | Plus |
Tsp29Fa-PA | 248 | CG9494-PA | 12..234 | 11..224 | 148 | 22.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18842-PA | 286 | GI18842-PA | 1..286 | 1..286 | 1505 | 97.9 | Plus |
Dmoj\GI21055-PA | 240 | GI21055-PA | 9..230 | 10..225 | 226 | 29 | Plus |
Dmoj\GI12231-PA | 235 | GI12231-PA | 6..221 | 7..221 | 181 | 24 | Plus |
Dmoj\GI17426-PA | 308 | GI17426-PA | 6..276 | 1..262 | 158 | 20.4 | Plus |
Dmoj\GI17539-PA | 317 | GI17539-PA | 17..253 | 9..215 | 155 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11172-PA | 287 | GL11172-PA | 1..287 | 1..286 | 1496 | 97.6 | Plus |
Dper\GL10398-PA | 239 | GL10398-PA | 10..230 | 11..225 | 223 | 28.3 | Plus |
Dper\GL26662-PA | 235 | GL26662-PA | 6..221 | 7..221 | 168 | 24.9 | Plus |
Dper\GL25578-PA | 248 | GL25578-PA | 4..234 | 3..224 | 154 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10902-PA | 287 | GA10902-PA | 1..287 | 1..286 | 1496 | 97.6 | Plus |
Dpse\GA21493-PA | 239 | GA21493-PA | 10..230 | 11..225 | 225 | 28.3 | Plus |
Dpse\GA21246-PA | 235 | GA21246-PA | 6..221 | 7..221 | 169 | 25.3 | Plus |
Dpse\GA21830-PA | 248 | GA21830-PA | 4..234 | 3..224 | 154 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16055-PA | 286 | GM16055-PA | 1..286 | 1..286 | 1534 | 100 | Plus |
Dsec\GM17854-PA | 139 | GM17854-PA | 1..139 | 148..286 | 754 | 100 | Plus |
Dsec\GM23410-PA | 235 | GM23410-PA | 6..221 | 7..221 | 194 | 27.1 | Plus |
Dsec\GM20434-PA | 225 | GM20434-PA | 6..216 | 21..225 | 186 | 25.6 | Plus |
Dsec\GM18589-PA | 254 | GM18589-PA | 18..253 | 9..214 | 174 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11804-PA | 286 | GD11804-PA | 1..286 | 1..286 | 1528 | 99.7 | Plus |
Dsim\GD25905-PA | 246 | GD25905-PA | 10..237 | 11..225 | 199 | 25.8 | Plus |
Dsim\GD24319-PA | 235 | GD24319-PA | 6..221 | 7..221 | 186 | 26.2 | Plus |
Dsim\GD23377-PA | 314 | GD23377-PA | 18..255 | 9..216 | 175 | 25.8 | Plus |
Dsim\GD23575-PA | 308 | GD23575-PA | 6..276 | 1..261 | 155 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21871-PA | 286 | GJ21871-PA | 1..286 | 1..286 | 1505 | 97.9 | Plus |
Dvir\GJ21977-PA | 240 | GJ21977-PA | 10..230 | 11..225 | 221 | 28.7 | Plus |
Dvir\GJ17850-PA | 235 | GJ17850-PA | 6..221 | 7..221 | 175 | 24.9 | Plus |
Dvir\GJ15439-PA | 313 | GJ15439-PA | 17..254 | 9..216 | 162 | 25.4 | Plus |
Dvir\GJ18361-PA | 310 | GJ18361-PA | 6..278 | 1..262 | 157 | 20.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15711-PA | 286 | GK15711-PA | 1..286 | 1..286 | 1510 | 98.3 | Plus |
Dwil\GK21888-PA | 239 | GK21888-PA | 9..230 | 10..225 | 221 | 27.7 | Plus |
Dwil\GK18739-PA | 235 | GK18739-PA | 6..221 | 7..221 | 175 | 24.9 | Plus |
Dwil\GK24538-PA | 248 | GK24538-PA | 4..231 | 3..221 | 159 | 24 | Plus |
Dwil\GK24539-PA | 308 | GK24539-PA | 6..276 | 1..261 | 155 | 20.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14334-PA | 286 | GE14334-PA | 1..286 | 1..286 | 1529 | 99.3 | Plus |
Dyak\GE13526-PA | 239 | GE13526-PA | 10..230 | 11..225 | 221 | 27.1 | Plus |
Dyak\GE12914-PA | 235 | GE12914-PA | 6..221 | 7..221 | 182 | 25.8 | Plus |
Dyak\GE25811-PA | 275 | GE25811-PA | 18..263 | 9..224 | 174 | 26.2 | Plus |
Dyak\GE18806-PA | 248 | GE18806-PA | 4..234 | 3..224 | 164 | 23.8 | Plus |
Translation from 160 to 1020
> GH25602.hyp MALPKKIKCFKYLVYSYVVLLALTGAAQIFLGTSLLWGHSVYYGIVQNKL WAPAAILLCLGPVTFILCWMGCQATNQRKRCLLGMFAALLVACICVQFII CGWSLAMRENLPTSVEIFIDDSFVEFLDKFSRTKVDNLHLWNRMQSQLQC CGVDGPLDYRRLSLPWSCCSRPEHAYESACDTHYKRGCLAVVSEQIRNRL LITAFGAAIIAIFQSLGIFCAVHLTILFGKNDNTHPMNMNRKKKQQQFLP LTIQDKRHDMPSPINLSPSAPGQRVLKTALPSAMHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TM4SF-PA | 286 | CG11303-PA | 1..286 | 1..286 | 1531 | 100 | Plus |
TM4SF-PC | 292 | CG11303-PC | 1..286 | 1..286 | 1531 | 100 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 10..229 | 11..224 | 229 | 27.3 | Plus |
Tsp39D-PB | 235 | CG8666-PB | 6..221 | 7..221 | 215 | 27.6 | Plus |
Tsp26A-PC | 277 | CG9093-PC | 18..265 | 9..224 | 186 | 25.6 | Plus |