Clone GH25655 Report

Search the DGRC for GH25655

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:256
Well:55
Vector:pOT2
Associated Gene/TranscriptCG1827-RD
Protein status:GH25655.pep: gold
Preliminary Size:1268
Sequenced Size:1301

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1827 2001-01-01 Release 2 assignment
CG1827 2002-06-12 Blastp of sequenced clone
CG1827 2003-01-01 Sim4 clustering to Release 3
CG1827 2008-04-29 Release 5.5 accounting
CG1827 2008-08-15 Release 5.9 accounting
CG1827 2008-12-18 5.12 accounting

Clone Sequence Records

GH25655.complete Sequence

1301 bp (1301 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122133

> GH25655.complete
TGATACACCAAGACTTCTCGTAGAGACCATTACGATTAACCATGAGAAGG
CACTTGCGGGCAAGTCTTTGGATCCTTTGTTTGGCCACCATGGCGTTTTC
CATCCTTGCGGCAGTAAATACTTCGCCCAAACCAACGCTGACTTCGGCGT
TTAGTGGAAAAGCTGGCACCACTGCCGTGAAGGCGAATAAGACGACGGGT
GAGCTGCTGCCCATGGTCATTAACACTTGGAACTTCACGGCTGCCAATGT
GCTCGCCTGGCGAATCCTGAAGCAAAGCAAGGGTGGACTCCGGCAGACGC
GGAATGCGGTAGTGGAGGGCTGCTCGAAGTGTGAGAAACTCCAGTGTGAC
CGAACGGTGGGCTATGGCGGATCGCCGGACGAGTTGGGCGAAACCACACT
GGATGCCATGGTCATGGACGGGGCCACCATGGATGTGGGGGCAGTGGCTG
GTCTGCGACGCATTAAGGATGCCATTAAGGTAGCCCGGCATGTTCTGGAA
CACACGCAGCACACCATGCTGGTGGGTGATGCGGCGTCAGCTTTCGCCAA
TGCTATGGGATTCGAATCAGAGTCGCTGGTCACGCCGGAGTCGAAGGACA
TGTGGTTACAGTGGACGGCTGAGAACTGCCAGCCAAACTTCTGGAAGAAC
GTTCACCCGGATCCCAAGGTCTCTTGCGGCCCGTATAAGCCGCGGCCGAC
TCCGCTGACCCGCTGGAAGGAGGACCGTGCCCGCAATGAGTATGAGATCG
GACGCAAGAACCACGATACCATCGGCATGATCGCCATCGACGTGGAAAGC
AACATCCACGCCGGCACCTCCACCAACGGGGCGCGGCACAAGATTCCCGG
ACGGGTCGGCGACTCCCCCATTCCGGGTGCTGGCGCTTATGCAGACAACG
AGGTGGGTGCAGCCGTGGCAACCGGAGATGGAGATGTGATGATGCGCTTC
CTGCCCTCCCTGCTAGCGGTGGAGACCATGCGGGCGGGAAAACCTCCGGC
TGAGGCAGCTCAAGAGGGCCTTCGCCGCATTCTCAAGCACCACAAGGATT
TCATGGGTGCTCTCATCGCCGTAGATCGGCTGGGTAATTATGGCGCTGCC
TGCTACGGCCTGGCCGAATTCCCCTTTATGGTTAGCAGTCCAGCCGGAGC
GGATGGGCCTACGCGCTTGGAAACGGTCAAATGCATAGGTGGTCAGGACA
AAGTAAATATCGTGGCGTTGTGAGGTGGCGAAAACTGTAACGTATTTCAA
TAAAATTTAAATTTCGTGGAGTTCTCATCTGCAAAAAAAAAAAAAAAAAA
A

GH25655.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827.a 1453 CG1827.a 76..1359 1..1284 6420 100 Plus
CG1827-RC 1453 CG1827-RC 76..1359 1..1284 6420 100 Plus
CG1827-RB 1328 CG1827-RB 199..1328 153..1282 5650 100 Plus
CG1827-RB 1328 CG1827-RB 1..147 8..154 735 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5476809..5477938 153..1282 5650 100 Plus
chr2R 21145070 chr2R 5476604..5476757 1..154 770 100 Plus
chr2R 21145070 chr2R 15172987..15173236 1008..759 380 76.8 Minus
chr2R 21145070 chr2R 15173424..15173587 562..399 235 76.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9589314..9590445 153..1284 5660 100 Plus
2R 25286936 2R 9589109..9589262 1..154 770 100 Plus
2R 25286936 2R 19285812..19286061 1008..759 380 76.8 Minus
2R 25286936 2R 19286249..19286412 562..399 235 76.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9590513..9591644 153..1284 5660 100 Plus
2R 25260384 2R 9590308..9590461 1..154 770 100 Plus
2R 25260384 2R 19287011..19287173 1008..846 290 78.5 Minus
2R 25260384 2R 19287475..19287611 535..399 205 76.6 Minus
2R 25260384 2R 19287190..19287260 829..759 145 80.2 Minus
Blast to na_te.dros performed on 2019-03-17 00:05:02 has no hits.

GH25655.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:06:11 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5476604..5476757 1..154 100 -> Plus
chr2R 5476811..5477938 155..1282 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:56:13 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 1..1134 90..1223 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:12 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 1..1134 90..1223 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:56:51 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 1..1182 42..1223 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:55 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 1..1134 90..1223 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:09:31 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 1..1182 42..1223 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:50:12 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 4..1285 1..1282 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:11 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 4..1285 1..1282 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:56:51 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 60..1341 1..1282 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:55 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RC 4..1285 1..1282 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:31 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
CG1827-RD 60..1341 1..1282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:11 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9589109..9589262 1..154 100 -> Plus
2R 9589316..9590443 155..1282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:11 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9589109..9589262 1..154 100 -> Plus
2R 9589316..9590443 155..1282 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:06:11 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9589109..9589262 1..154 100 -> Plus
2R 9589316..9590443 155..1282 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:56:51 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5476614..5476767 1..154 100 -> Plus
arm_2R 5476821..5477948 155..1282 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:46:46 Download gff for GH25655.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9590515..9591642 155..1282 100   Plus
2R 9590308..9590461 1..154 100 -> Plus

GH25655.pep Sequence

Translation from 41 to 1222

> GH25655.pep
MRRHLRASLWILCLATMAFSILAAVNTSPKPTLTSAFSGKAGTTAVKANK
TTGELLPMVINTWNFTAANVLAWRILKQSKGGLRQTRNAVVEGCSKCEKL
QCDRTVGYGGSPDELGETTLDAMVMDGATMDVGAVAGLRRIKDAIKVARH
VLEHTQHTMLVGDAASAFANAMGFESESLVTPESKDMWLQWTAENCQPNF
WKNVHPDPKVSCGPYKPRPTPLTRWKEDRARNEYEIGRKNHDTIGMIAID
VESNIHAGTSTNGARHKIPGRVGDSPIPGAGAYADNEVGAAVATGDGDVM
MRFLPSLLAVETMRAGKPPAEAAQEGLRRILKHHKDFMGALIAVDRLGNY
GAACYGLAEFPFMVSSPAGADGPTRLETVKCIGGQDKVNIVAL*

GH25655.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12478-PA 347 GF12478-PA 1..347 1..342 1430 79.4 Plus
Dana\GF12480-PA 231 GF12480-PA 1..222 172..393 962 77.9 Plus
Dana\GF11609-PA 378 GF11609-PA 26..359 49..391 849 47.2 Plus
Dana\GF12479-PA 135 GF12479-PA 10..131 44..165 489 74.6 Plus
Dana\GF21911-PA 332 GF21911-PA 34..274 72..325 271 31.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24090-PA 396 GG24090-PA 1..396 1..393 1980 93.5 Plus
Dere\GG20738-PA 399 GG20738-PA 50..378 54..388 835 45.7 Plus
Dere\GG17888-PA 331 GG17888-PA 34..295 72..351 263 30.1 Plus
Dere\GG13500-PA 364 GG13500-PA 61..283 107..333 181 29.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22932-PA 393 GH22932-PA 28..382 28..382 1324 68.5 Plus
Dgri\GH12871-PA 327 GH12871-PA 33..290 71..351 240 29.9 Plus
Dgri\GH11081-PA 326 GH11081-PA 43..288 79..351 239 30.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PD 393 CG1827-PD 1..393 1..393 2066 100 Plus
CG10474-PA 341 CG10474-PA 1..330 58..387 1013 59.3 Plus
CG4372-PA 397 CG4372-PA 7..378 13..388 817 42.6 Plus
CG7860-PB 332 CG7860-PB 34..296 72..351 263 29.4 Plus
CG7860-PA 332 CG7860-PA 34..296 72..351 263 29.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18418-PA 418 GI18418-PA 80..414 56..393 1387 73.7 Plus
Dmoj\GI17598-PA 341 GI17598-PA 95..305 107..351 282 33.7 Plus
Dmoj\GI14971-PA 329 GI14971-PA 34..292 72..351 233 28.4 Plus
Dmoj\GI12255-PA 362 GI12255-PA 61..281 107..333 172 26.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17147-PA 388 GL17147-PA 7..388 9..391 1512 72.5 Plus
Dper\GL17509-PA 457 GL17509-PA 23..361 45..388 832 47.8 Plus
Dper\GL16551-PA 325 GL16551-PA 52..292 91..351 238 28.4 Plus
Dper\GL25099-PA 366 GL25099-PA 61..260 107..304 195 27.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14866-PA 388 GA14866-PA 7..388 9..391 1522 72.7 Plus
Dpse\GA14866-PB 348 GA14866-PB 14..348 57..391 1511 80.3 Plus
Dpse\GA18140-PA 457 GA18140-PA 23..361 45..388 840 47.5 Plus
Dpse\GA20639-PA 325 GA20639-PA 52..292 91..351 235 28.4 Plus
Dpse\GA18757-PA 366 GA18757-PA 61..260 107..304 195 27.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21137-PA 393 GM21137-PA 1..393 1..393 2040 96.7 Plus
Dsec\GM15681-PA 397 GM15681-PA 17..378 22..388 835 43.2 Plus
Dsec\GM19841-PA 84 GM19841-PA 6..80 255..329 285 70.7 Plus
Dsec\GM24449-PA 365 GM24449-PA 61..284 107..333 187 28.4 Plus
Dsec\GM13163-PA 89 GM13163-PA 1..63 198..264 151 49.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10667-PA 393 GD10667-PA 1..393 1..393 2047 97.2 Plus
Dsim\GD25331-PA 341 GD25331-PA 1..330 58..387 1024 59.2 Plus
Dsim\GD25160-PA 397 GD25160-PA 50..378 54..388 844 46 Plus
Dsim\GD24689-PA 332 GD24689-PA 34..296 72..351 236 28.3 Plus
Dsim\GD12517-PA 365 GD12517-PA 61..284 107..333 187 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21504-PA 333 GJ21504-PA 1..333 58..393 1367 74.7 Plus
Dvir\GJ17943-PA 345 GJ17943-PA 26..309 47..351 286 30.7 Plus
Dvir\GJ18932-PA 328 GJ18932-PA 52..291 91..351 231 28.8 Plus
Dvir\GJ11486-PA 360 GJ11486-PA 61..279 107..333 175 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15947-PA 336 GK15947-PA 1..336 58..393 1482 78.9 Plus
Dwil\GK15948-PA 393 GK15948-PA 5..382 11..382 1234 62.5 Plus
Dwil\GK18649-PA 334 GK18649-PA 61..294 91..351 255 30.8 Plus
Dwil\GK18410-PA 334 GK18410-PA 61..294 91..351 254 30.4 Plus
Dwil\GK20035-PA 327 GK20035-PA 50..287 91..351 253 31.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19290-PA 396 GE19290-PA 1..396 1..393 1945 91.4 Plus
Dyak\GE12034-PA 341 GE12034-PA 1..330 58..387 1056 62 Plus
Dyak\GE12031-PA 295 GE12031-PA 2..284 105..387 875 60.7 Plus
Dyak\GE13669-PA 399 GE13669-PA 50..378 54..388 828 45.7 Plus
Dyak\GE17195-PA 331 GE17195-PA 52..295 91..351 245 30 Plus

GH25655.hyp Sequence

Translation from 41 to 1222

> GH25655.hyp
MRRHLRASLWILCLATMAFSILAAVNTSPKPTLTSAFSGKAGTTAVKANK
TTGELLPMVINTWNFTAANVLAWRILKQSKGGLRQTRNAVVEGCSKCEKL
QCDRTVGYGGSPDELGETTLDAMVMDGATMDVGAVAGLRRIKDAIKVARH
VLEHTQHTMLVGDAASAFANAMGFESESLVTPESKDMWLQWTAENCQPNF
WKNVHPDPKVSCGPYKPRPTPLTRWKEDRARNEYEIGRKNHDTIGMIAID
VESNIHAGTSTNGARHKIPGRVGDSPIPGAGAYADNEVGAAVATGDGDVM
MRFLPSLLAVETMRAGKPPAEAAQEGLRRILKHHKDFMGALIAVDRLGNY
GAACYGLAEFPFMVSSPAGADGPTRLETVKCIGGQDKVNIVAL*

GH25655.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1827-PD 393 CG1827-PD 1..393 1..393 2066 100 Plus
CG10474-PA 341 CG10474-PA 1..330 58..387 1013 59.3 Plus
CG4372-PA 397 CG4372-PA 7..378 13..388 817 42.6 Plus
CG7860-PB 332 CG7860-PB 34..296 72..351 263 29.4 Plus
CG7860-PA 332 CG7860-PA 34..296 72..351 263 29.4 Plus