BDGP Sequence Production Resources |
Search the DGRC for GH25768
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 257 |
Well: | 68 |
Vector: | pOT2 |
Associated Gene/Transcript | Cog3-RA |
Protein status: | GH25768.pep: gold |
Preliminary Size: | 2962 |
Sequenced Size: | 2966 |
Gene | Date | Evidence |
---|---|---|
CG3248 | 2001-01-01 | Release 2 assignment |
CG3248 | 2001-07-04 | Blastp of sequenced clone |
CG3248 | 2003-01-01 | Sim4 clustering to Release 3 |
Cog3 | 2008-04-29 | Release 5.5 accounting |
Cog3 | 2008-08-15 | Release 5.9 accounting |
Cog3 | 2008-12-18 | 5.12 accounting |
2966 bp (2966 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051613
> GH25768.complete AAATGGATGACGTCGAACGAATTCAGAGCGAGAATGAGAATTTGCGCAAG ATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACGGACCCGCTGGCGGC TCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCTGACCAATCTGTGGC GCGACAGCGGACCATCGGCACCGGCACCGACTACGCCCACCCAGGTGGGT CCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGCGGCGATGACATCAG ACTACCTGCGGAGGGACTCCAGAACACCAATGAGTTTCTGCTTTGGTTCG CGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATGCCGACTACCACAAA TACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGCTCCCACATGCTGGA CCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCTCTGCGACGAGTACG ACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGGCCAGCGAGCAGTTG ATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCACGAGATTCAACGCCG TCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCAACGACTTCAGAGCC CCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGTGCCTCAACAAGATC GACGAATGCCTAAACTACATCGAGGAGAATCCCAAATTCAAGGATGCGGC CGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAAAGCCTCGGGTCTGG TGCGTAACTATGTGACGAGTGTGATAAACCAGGCAACCGAGGCCACGCTC CATCCCAAGAACAATATGCCGGATGCCTCCGCTGCTCTCAAGGCACCAGA TGCCGCATTCGCTCTGTACTACGGCAAATATCAAACGGCCGCGGCAAAAG TGAAGCGGGTCGCCCAGTTGATTGAGTCCCGGTCGGAACACAGCCTCGAC TACGCCCAACTAATGGCGGATCTTCAACAGCACTACTTGGCGCAAAGAGC CAGCGTTATGTCGCCAGCAGTGAATCTGTCCATACAAAACGTTAAGGTGG CCCACAAAGGGGATCACTGCTCTCTCACCCGAAGCGCCTGCGCCTTTTTG GTGCATGTTTGCCAGGACGAACAGCGTTTGTTCTACCAGTTCTTCAGCAC AGGAGCGCCACACCTGACGGTTTATCTGGAGGGTCTGTGCACCATTCTCT ATGACACCATGCGACCCTTTATTATACATATTAATCACTTGGAAACGCTG GCGGAGATCTGCTCCATTCTACGAATTGAAATGCTGGAGGAGCATGTCCA GCAGAATCCTGTTGCACTGGAAGCCTTTGCCACCATTGCGCACCAATTGC TGCAGGATGTGCAGGAGCGTTTAGTCTTCCGAGCGCATCTATATCTGCAG TCGGACATTCAGAACTTTAATCCCTCATCGGGAGATTTGGCCTACCCCGA GAAGTTGGAAATGATGGAGAGCATTGCCCTGTCCCTTCAAGAACCCGCCC CTTTGCGCCGCTCCGATTCTCGCAACTCCATGGTTTCCAGTGTTTCAAGT GCTGTGGAGACGGAAAGCGTGGCCACTGCCTACACGGTGAAGCAAATGAA TTCCCCGGCCGATCTGCATGGCATGTGGTACCCCACAGTACGTCGGACAC TGGTGTGCCTCTCAAGGCTTTACCGCTGCGTGGATCGACCCATTTTCCAA GGCCTTTCTCAGGAAGCGCTCAAGCTGTGCATCCAGAGTGTCTCTCATGC GGCTGGCAAGATATCAGCCAATAAGACGCCAATTGATGGCGAGCTCTTCG AAATCAAGCATCTCCTAATTCTGCGGGAACAGATTGCACCGTTTCGTGTG GACTTTACGGTGAAGGAAACTTCGCTGGACTTTAGCAAGGTGAAGACCGC AGCCTTTGGATTGCTGCAGAAGCGCAAACAGCTCTTTTCGATGGGTAGCA ATAATGCGCTGTTGGAATTCCTTCTGGAGGGCACGCCGCAGATCAAGGAG CATTTACTCGACTCTCGCAAGGAAGTTGACCGTCAGCTCAAGTCGGTGTG CGAGAAGTACATCAAGGATGCAGTTCAAATGCTAGTGGGCCCTCTCATCA CATTCCTAGAAAAGGCGCAGAGTCTGTTGGCGCAGTCCACTCCAGCCACG CCCCAATCGCCGGAGTCGACGAAAGCCAGCTACGTTCTAAGGCAAAGTCC ATGGGCCAGTCCGCAGCAGATCAGCAGTATAATCCAGGAGACGCAGCGCT TGATCAAAGCCAAGCTGGCGGTGCTACAGCGGTCCATGCAGCTCTACCTA AGCAATCGTGATACAGAATTCATCATCTTCAGACCGATCCGAAACAACAT CATTCAATCGTTTGTAAAGCTGGAACAACTGCTGACCACCAATGGTTACT CCACAGATGATATGATCATCACGAGTTGTCCGTCGGCGGAGCAAGTTTCC ATACTTTTATCCAGTGCCAGCATTTTGGCCGCCGAGGGAGTCGCCAGCTT TGCAGCAGCAGCGCGCAAAATCAGCACGTCGTCGTCAGTGGAAGGTTCCA CGGTTGGCAGAAAGCTAAGCGCGATGTCCAACAAATCTGAACTTGTGGAG GAGCCAAAAGTTGAAGAAGTCGCTGGCCAGATCGAAGTGGTGCCCGCAGA AGTACAACCTCCTGCCAAGATCGAGGAGGAGGAAGTGACGGAAACGCAAA CGCAGGCCAATTCCGAATAATTTGCAATGTATCTGTATAACTATAATCGT GTATCTATTTATGTAGCTAAGCCTTGTATCATATTTATCTGATTAAGATC TGTTCGCAATAGGGTCGATTCCCTTATTTCCCTTTAAAGATCCGTGTTAA AAACTATCTACGCTTTCCAAATGTAGACTTAACATTAATTTATTTTTGCT AAACCACGAAGAATGTGACGAAGTCGAAGTAAATTACCAACAAATTAAAA AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 3453932..3454674 | 2342..1600 | 3715 | 100 | Minus |
chr2L | 23010047 | chr2L | 3453270..3453873 | 2946..2343 | 3020 | 100 | Minus |
chr2L | 23010047 | chr2L | 3455875..3456388 | 680..167 | 2525 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 3455329..3455817 | 1169..681 | 2445 | 100 | Minus |
chr2L | 23010047 | chr2L | 3456443..3456610 | 168..1 | 840 | 100 | Minus |
chr2L | 23010047 | chr2L | 3454917..3455077 | 1469..1309 | 805 | 100 | Minus |
chr2L | 23010047 | chr2L | 3455137..3455276 | 1308..1169 | 700 | 100 | Minus |
chr2L | 23010047 | chr2L | 3454729..3454860 | 1599..1468 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 3454359..3455101 | 2342..1600 | 3715 | 100 | Minus |
2L | 23513712 | 2L | 3453696..3454300 | 2947..2343 | 3025 | 100 | Minus |
2L | 23513712 | 2L | 3456302..3456815 | 680..167 | 2570 | 100 | Minus |
2L | 23513712 | 2L | 3455756..3456244 | 1169..681 | 2445 | 100 | Minus |
2L | 23513712 | 2L | 3456870..3457037 | 168..1 | 840 | 100 | Minus |
2L | 23513712 | 2L | 3455344..3455504 | 1469..1309 | 805 | 100 | Minus |
2L | 23513712 | 2L | 3455564..3455703 | 1308..1169 | 700 | 100 | Minus |
2L | 23513712 | 2L | 3455156..3455287 | 1599..1468 | 660 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 3454359..3455101 | 2342..1600 | 3715 | 100 | Minus |
2L | 23513712 | 2L | 3453696..3454300 | 2947..2343 | 3025 | 100 | Minus |
2L | 23513712 | 2L | 3456302..3456815 | 680..167 | 2570 | 100 | Minus |
2L | 23513712 | 2L | 3455756..3456244 | 1169..681 | 2445 | 100 | Minus |
2L | 23513712 | 2L | 3456870..3457037 | 168..1 | 840 | 100 | Minus |
2L | 23513712 | 2L | 3455344..3455504 | 1469..1309 | 805 | 100 | Minus |
2L | 23513712 | 2L | 3455564..3455703 | 1308..1169 | 700 | 100 | Minus |
2L | 23513712 | 2L | 3455156..3455287 | 1599..1468 | 660 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 3453270..3453873 | 2343..2946 | 100 | <- | Minus |
chr2L | 3453932..3454674 | 1600..2342 | 100 | <- | Minus |
chr2L | 3454729..3454858 | 1470..1599 | 100 | <- | Minus |
chr2L | 3454917..3455077 | 1309..1469 | 100 | <- | Minus |
chr2L | 3455137..3455276 | 1169..1308 | 100 | <- | Minus |
chr2L | 3455330..3455817 | 681..1168 | 100 | <- | Minus |
chr2L | 3455875..3456387 | 168..680 | 99 | <- | Minus |
chr2L | 3456444..3456610 | 1..167 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 1..2718 | 3..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 1..2718 | 3..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 1..2718 | 3..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 1..2718 | 3..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 1..2718 | 3..2720 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 22..2967 | 1..2946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 22..2967 | 1..2946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 28..2973 | 1..2946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 22..2967 | 1..2946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog3-RA | 28..2973 | 1..2946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3453697..3454300 | 2343..2946 | 100 | <- | Minus |
2L | 3454359..3455101 | 1600..2342 | 100 | <- | Minus |
2L | 3455156..3455285 | 1470..1599 | 100 | <- | Minus |
2L | 3455344..3455504 | 1309..1469 | 100 | <- | Minus |
2L | 3455564..3455703 | 1169..1308 | 100 | <- | Minus |
2L | 3455757..3456244 | 681..1168 | 100 | <- | Minus |
2L | 3456302..3456814 | 168..680 | 100 | <- | Minus |
2L | 3456871..3457037 | 1..167 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3453697..3454300 | 2343..2946 | 100 | <- | Minus |
2L | 3454359..3455101 | 1600..2342 | 100 | <- | Minus |
2L | 3455156..3455285 | 1470..1599 | 100 | <- | Minus |
2L | 3455344..3455504 | 1309..1469 | 100 | <- | Minus |
2L | 3455564..3455703 | 1169..1308 | 100 | <- | Minus |
2L | 3455757..3456244 | 681..1168 | 100 | <- | Minus |
2L | 3456302..3456814 | 168..680 | 100 | <- | Minus |
2L | 3456871..3457037 | 1..167 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3453697..3454300 | 2343..2946 | 100 | <- | Minus |
2L | 3454359..3455101 | 1600..2342 | 100 | <- | Minus |
2L | 3455156..3455285 | 1470..1599 | 100 | <- | Minus |
2L | 3455344..3455504 | 1309..1469 | 100 | <- | Minus |
2L | 3455564..3455703 | 1169..1308 | 100 | <- | Minus |
2L | 3455757..3456244 | 681..1168 | 100 | <- | Minus |
2L | 3456302..3456814 | 168..680 | 100 | <- | Minus |
2L | 3456871..3457037 | 1..167 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 3455344..3455504 | 1309..1469 | 100 | <- | Minus |
arm_2L | 3455564..3455703 | 1169..1308 | 100 | <- | Minus |
arm_2L | 3455156..3455285 | 1470..1599 | 100 | <- | Minus |
arm_2L | 3453697..3454300 | 2343..2946 | 100 | <- | Minus |
arm_2L | 3454359..3455101 | 1600..2342 | 100 | <- | Minus |
arm_2L | 3455757..3456244 | 681..1168 | 100 | <- | Minus |
arm_2L | 3456302..3456814 | 168..680 | 100 | <- | Minus |
arm_2L | 3456871..3457037 | 1..167 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 3455757..3456244 | 681..1168 | 100 | <- | Minus |
2L | 3453697..3454300 | 2343..2946 | 100 | <- | Minus |
2L | 3454359..3455101 | 1600..2342 | 100 | <- | Minus |
2L | 3455156..3455285 | 1470..1599 | 100 | <- | Minus |
2L | 3455344..3455504 | 1309..1469 | 100 | <- | Minus |
2L | 3455564..3455703 | 1169..1308 | 100 | <- | Minus |
2L | 3456302..3456814 | 168..680 | 100 | <- | Minus |
2L | 3456871..3457037 | 1..167 | 100 | Minus |
Translation from 2 to 2719
> GH25768.hyp MDDVERIQSENENLRKIRNRLMQWESKTDPLAALSIQQEEHLDVLTNLWR DSGPSAPAPTTPTQVGPTDSSAAATSQSGDDIRLPAEGLQNTNEFLLWFA DVSAEIEQRGDADYHKYLQQLEQRKAECSHMLDQIAGAMERLGALCDEYD FVSQKTSALNTASEQLIEEQERLQELSHEIQRRLHYFSQVELLNQRLQSP TLSVASEAFRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLV RNYVTSVINQATEATLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKV KRVAQLIESRSEHSLDYAQLMADLQQHYLAQRASVMSPAVNLSIQNVKVA HKGDHCSLTRSACAFLVHVCQDEQRLFYQFFSTGAPHLTVYLEGLCTILY DTMRPFIIHINHLETLAEICSILRIEMLEEHVQQNPVALEAFATIAHQLL QDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQEPAP LRRSDSRNSMVSSVSSAVETESVATAYTVKQMNSPADLHGMWYPTVRRTL VCLSRLYRCVDRPIFQGLSQEALKLCIQSVSHAAGKISANKTPIDGELFE IKHLLILREQIAPFRVDFTVKETSLDFSKVKTAAFGLLQKRKQLFSMGSN NALLEFLLEGTPQIKEHLLDSRKEVDRQLKSVCEKYIKDAVQMLVGPLIT FLEKAQSLLAQSTPATPQSPESTKASYVLRQSPWASPQQISSIIQETQRL IKAKLAVLQRSMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGYS TDDMIITSCPSAEQVSILLSSASILAAEGVASFAAAARKISTSSSVEGST VGRKLSAMSNKSELVEEPKVEEVAGQIEVVPAEVQPPAKIEEEEVTETQT QANSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cog3-PA | 905 | CG3248-PA | 1..905 | 1..905 | 4550 | 100 | Plus |
Translation from 2 to 2719
> GH25768.pep MDDVERIQSENENLRKIRNRLMQWESKTDPLAALSIQQEEHLDVLTNLWR DSGPSAPAPTTPTQVGPTDSSAAATSQSGDDIRLPAEGLQNTNEFLLWFA DVSAEIEQRGDADYHKYLQQLEQRKAECSHMLDQIAGAMERLGALCDEYD FVSQKTSALNTASEQLIEEQERLQELSHEIQRRLHYFSQVELLNQRLQSP TLSVASEAFRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLV RNYVTSVINQATEATLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKV KRVAQLIESRSEHSLDYAQLMADLQQHYLAQRASVMSPAVNLSIQNVKVA HKGDHCSLTRSACAFLVHVCQDEQRLFYQFFSTGAPHLTVYLEGLCTILY DTMRPFIIHINHLETLAEICSILRIEMLEEHVQQNPVALEAFATIAHQLL QDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQEPAP LRRSDSRNSMVSSVSSAVETESVATAYTVKQMNSPADLHGMWYPTVRRTL VCLSRLYRCVDRPIFQGLSQEALKLCIQSVSHAAGKISANKTPIDGELFE IKHLLILREQIAPFRVDFTVKETSLDFSKVKTAAFGLLQKRKQLFSMGSN NALLEFLLEGTPQIKEHLLDSRKEVDRQLKSVCEKYIKDAVQMLVGPLIT FLEKAQSLLAQSTPATPQSPESTKASYVLRQSPWASPQQISSIIQETQRL IKAKLAVLQRSMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGYS TDDMIITSCPSAEQVSILLSSASILAAEGVASFAAAARKISTSSSVEGST VGRKLSAMSNKSELVEEPKVEEVAGQIEVVPAEVQPPAKIEEEEVTETQT QANSE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23417-PA | 903 | GF23417-PA | 1..903 | 1..905 | 4212 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24440-PA | 898 | GG24440-PA | 1..898 | 1..905 | 4616 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10190-PA | 938 | GH10190-PA | 1..914 | 1..904 | 3734 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cog3-PA | 905 | CG3248-PA | 1..905 | 1..905 | 4550 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14259-PA | 899 | GI14259-PA | 1..898 | 1..900 | 3794 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18896-PA | 914 | GL18896-PA | 1..914 | 1..905 | 4115 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16936-PA | 914 | GA16936-PA | 1..914 | 1..905 | 4129 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11134-PA | 905 | GM11134-PA | 1..905 | 1..905 | 4748 | 97.6 | Plus |
Dsec\GM19296-PA | 360 | GM19296-PA | 1..360 | 546..905 | 1829 | 96.9 | Plus |
Dsec\GM13610-PA | 308 | GM13610-PA | 1..297 | 237..533 | 1578 | 98.7 | Plus |
Dsec\GM22573-PA | 307 | GM22573-PA | 1..261 | 1..261 | 1344 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22758-PA | 874 | GD22758-PA | 1..874 | 1..905 | 4421 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20636-PA | 916 | GJ20636-PA | 1..888 | 1..889 | 3859 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24854-PA | 879 | GK24854-PA | 1..855 | 1..867 | 3794 | 83.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14875-PA | 905 | GE14875-PA | 1..905 | 1..905 | 4658 | 96 | Plus |